RadishBase

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Alignment for radish unigene UN17829

               1      -     51
UN17829        --> GGCGGTCTCAAACCCTAATTGTAGTCTTCGCCGTCTAGCATCCATCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- ..................................................
EY895360       <-- ..................................................
EY894010       <-- ..................................................
FD975043       <-- ..................................................
EX769254       <-- ..................................................
FD978881       --> GGCGGTCTCAAACCCTAATTGTAGTCTTCGCCGT-TCG-AGC-ATCCATC
EY897798       --> ..gGGTCTCAAACCCTAATTGTAGTCTTCGCCGTCTAGCATCCATCCATC
EY899634       --> ..gGGTCTCAAACCCTAATTGTAGTCTTCGCCGTCTAGCATCCATCCATC
FY432965       --> ..........................................CATCCATC
EX756775       --> ..................................................
FD947886       --> ..................................................
EY925607       --> ..................................................
FD556923       --> ..................................................
FD543207       --> ..................................................
EX765464       --> ..................................................

               51     -    101
UN17829        --> CATGGGTCGTGTCATCAGAGCCCAACGTAAGGGAGCTGGTTCCGTCTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- ..................................................
EY895360       <-- ..................................................
EY894010       <-- ..................................................
FD975043       <-- ..................................................
EX769254       <-- ..................................................
FD978881       --> CATGGGTCGTGTCATCAGAGCTCAACGTAAGGGAGCTGGTTCCGTCTTCA
EY897798       --> CATGGGTCGTGTCATCAGAGCCCAACGTAAGGGAGCAGGTTCCGTCTTCA
EY899634       --> CATGGGTCGTGTCATCAGAGCCCAACGTAAGGGAGCAGGTTCCGTCTTCA
FY432965       --> CATGGGTCGTGTCATCAGAGCCCAACGTAAGGGAGCTGGTTCCGTCTTCA
EX756775       --> ..................................................
FD947886       --> ..................................................
EY925607       --> ..................................................
FD556923       --> ..................................................
FD543207       --> ..................................................
EX765464       --> ..................................................

               101    -    151
UN17829        --> AGTCCCACACCCACCACCGCAAGGGTCCAGCCAAGTTCCGCAGCCTCGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- ..................................................
EY895360       <-- ..................................................
EY894010       <-- ..................................................
FD975043       <-- ..................................................
EX769254       <-- ..................................................
FD978881       --> AGTCCCACAACCACCACCGCAAGGGTCCAGCCAAGTTCCGCAGCCTCGAC
EY897798       --> AGTCCCACACCCACCACCGCAAGGGTCCAGCCAAGTTCCGCAGCCTCGAC
EY899634       --> AGTCCCACACCCACCACCGCAAGGGTCCAGCCAAGTTCCGCAGCCTCGAC
FY432965       --> AATCCCACACCCACCACCGCAAGGGTCCAGCCAAGTTCCGCAGCCTCGAC
EX756775       --> ..................................................
FD947886       --> ..................................................
EY925607       --> ..................................................
FD556923       --> ..................................................
FD543207       --> ..................................................
EX765464       --> ..................................................

               151    -    201
UN17829        --> TACGGCGAGAGAAATGGATACCTCAAGGGCGTCGTGACGGAGATCATCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- ...GGCGAGAGAAATGGATACCTCAAGGGCGTCGTGACGGAGATCATCCA
EY895360       <-- ..................................................
EY894010       <-- ..................................................
FD975043       <-- ..................................................
EX769254       <-- ..................................................
FD978881       --> TACGGCGAGAGAAATGGATACCTCAAGGGCGTCGTGACGGAGATCATCCA
EY897798       --> TACGGCGAGAGAAATGGATACCTCAAGGGCGTCGTGACGGAGATCATCCA
EY899634       --> TACGGCGAGAGAAATGGATACCTCAAGGGCGTCGTGACGGAGATCATCCA
FY432965       --> TACGGCGAGAGAAATGGATACCTCAAGGGCGTCGTGACGGAGATCATCCA
EX756775       --> .................gTACCTCAAGGGCGTCGTGACGGAGATCATCCA
FD947886       --> ..................................................
EY925607       --> ..................................................
FD556923       --> ..................................................
FD543207       --> ..................................................
EX765464       --> ..................................................

               201    -    251
UN17829        --> CGATCCCGGCCGTGGTGCGCCGCTAGCTCGCGTCGCGTTCCGTCATCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- CGATCCTGGCCGTGGTGCGCCGCTAGCTCGCGTCGCGTTCCGTCATCCTT
EY895360       <-- ..................................................
EY894010       <-- ..................................................
FD975043       <-- ..................................................
EX769254       <-- ..................................................
FD978881       --> CGATCCCGGCCGTGGTGCGCCGCTAGCTCGCGTCGCGTTCCGTCATCCTT
EY897798       --> CGATCCCGGCCGTGGTGCGCCGCTAGCTCGCGTCGCGTTCCGTCATCCTT
EY899634       --> CGATCCCGGCCGTGGTGCGCCGCTAGCTCGCGTCGCGTTCCGTCATCCTT
FY432965       --> CGATCCTGGCCGTGGTGCGCCGCTAGCTCGCGTCGCGTTCCGTCATCCTT
EX756775       --> CGATCCCGGCCGTGGTGCGCCGCTAGCTCGCGTCGCGTTCCGTCATCCTT
FD947886       --> ..................................................
EY925607       --> ..................................................
FD556923       --> ..................................................
FD543207       --> ..................................................
EX765464       --> ..................................................

               251    -    301
UN17829        --> TCCGTTACAAGAAGCAGAAGGAGCTCTTCGTCGCCGCCGAGGGTATGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- TCCGTTACAAGAAGCAGAAGGAGCTCTTCGTCGCCGCGGAGGGTATGTAC
EY895360       <-- ........................TCTTCGTCGCCGCCGAGGGTATGTAC
EY894010       <-- ................................GCCGCCGAGGGTATGTAC
FD975043       <-- ..................................................
EX769254       <-- ..................................................
FD978881       --> TCCGTTACAAGAAGCAGAAGGAGCTCTTCGTCGCCGCCGAAGGTATGTAC
EY897798       --> TCCGTTACAAGAAGCAGAAGGAGCTCTTCGTCGCCGCCGAGGGTATGTAC
EY899634       --> TCCGTTACAAGAAGCAGAAGGAGCTCTTCGTCGCCGCCGAGGGTATGTAC
FY432965       --> TCCGTTACAAGAAGCAGAAGGAGCTCTTCGTCGCCGCGGAGGGTATGTAC
EX756775       --> TCCGTTACAAGAAGCAGAAGGAGCTCTTCGTCGCCGCCGAAGGTATGTAC
FD947886       --> ............gGCAGAAGGAGCTCTTCGTCGCCGCGGAGGGTATGTAC
EY925607       --> ......................GCTCTTCGTCGCCGCCGAGGGTATGTAC
FD556923       --> ......................GCTCTTCGTCGCCGCCGAGGGTATGTAC
FD543207       --> ..................................................
EX765464       --> ..................................................

               301    -    351
UN17829        --> ACGGGACAGTTCTTGTACTGCGGTAAGAAAGCCACTCTCGTTGTCGGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- ACGGGGCAGTTCTTGTACTGCGGTAAGAAAGCCACTCTCGTTGTCGGAAA
EY895360       <-- ACGGGACAGTTCTTGTACTGCGGTAAGAAAGCCACTCTCGTTGTCGGAAA
EY894010       <-- ACGGGACAGTTCTTGTACTGCGGTAAGAAAGCCACTCTCGTTGTCGGAAA
FD975043       <-- .............................................GGAAA
EX769254       <-- ..................................................
FD978881       --> ACGGGACAGTTCTTGTACTGCGGTAAGAAAGCCACTCTCGTTGTCGGAAA
EY897798       --> ACGGGACAGTTCTTGTACTGCGGTAAGAAAGCCACTCTCGTTGTCGGAAA
EY899634       --> ACGGGACAGTTCTTGTACTGCGGTAAGAAAGCCACTCTCGTTGTCGGAAA
FY432965       --> ACGGGGCAGTTCTTGTACTGCGGTAAGAAAGCCACTCTCGTTGTCGGAAA
EX756775       --> ACAGGACAGTTCTTGTACTGCGGTAAGAAAGCCACTCTCGTTGTCGGAAA
FD947886       --> ACGGGACAGTTCTTGTACTGCGGTAAGAAAGCCACTCTCGTTGTCGGAAA
EY925607       --> ACGGGACAGTTCTTGTACTGCGGTAAGAAAGCCACTCTCGTTGTCGGAAA
FD556923       --> ACGGGACAGTTCTTGTACTGCGGTAAGAAAGCCACTCTCGTTGTCGGAAA
FD543207       --> ..................................................
EX765464       --> ..................................................

               351    -    401
UN17829        --> TGTTCTCCCCCTTAGAGCTATTCCTGAAGGAGCTGTTGTCTGTAACGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- TGTTCTCCCGCTTAGAGCTATTCCTGAAGGAGCTGTTGTCTGTAACGTCG  Raphanus sativus cv GSK3-1
EY895360       <-- TGTTCTCCCCCTTAGAGCAATTCCTGAAGGAGCTGTTGTCTGTAACGTCG  Raphanus raphanistrum subsp. maritimus
EY894010       <-- TGTTCTCCCCCTTAGAGCAATTCCTGAAGGAGCTGTTGTCTGTAACGTCG  Raphanus raphanistrum subsp. maritimus
FD975043       <-- TGTTCTCCCGCTTAGGGCTATTCCTGAAGGAGCTGTTGTCTGCAACGTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769254       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978881       --> TGTTCTCCCGCTTAGGGCTATTCCTGAAGGAGCTGTTGTCTGCAACGTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY897798       --> TGTTCTCCCCCTTAGAGCAATTCCTGAAGGAGCTGTTGTCTGTAACGTCG  Raphanus raphanistrum subsp. maritimus
EY899634       --> TGTTCTCCCCCTTAGAGCAATTCCTGAAGGAGCTGTTGTCTGTAACGTCG  Raphanus raphanistrum subsp. maritimus
FY432965       --> TGTTCTCCCGCTTAGAGCTATTCCTGAAGGAGCTGTTGTCTGTAACGTCG  Raphanus sativus cv GSK3-1
EX756775       --> TGTTCTCCCCCTTAGGGCTATTCCTGAAGGAGCTGTTGTCTGCAACGTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947886       --> TGTTCTCCCGCTTAGAGCTATTCCTGAAGGAGCTGTTGTCTGTAACGTCG  Raphanus sativus cv Early Scarlet Globe
EY925607       --> TGTTCTCCCCCTTAGAGCAATTCCTGAAGGAGCTGTTGTCTGTAACGTCG  Raphanus raphanistrum subsp. landra
FD556923       --> TGTTCTCCCCCTTAGAGCAATTCCTGAAGGAGCTGTTGTCTGTAACGTCG  Raphanus raphanistrum subsp. landra
FD543207       --> ..........................................gAACGTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765464       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               401    -    451
UN17829        --> AGCATCATGTCGGTGATCGTGGTGTGCTCGCTAGAGCTTCTGGTGATTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- AGCATCATGTCGGTGATCGTGGTGTGCTCGCTAGAGCTTCTGGTGATTAC  Raphanus sativus cv GSK3-1
EY895360       <-- AGCATCATGTCGGTGATCGTGGTGTCCTCGCTAGAGCTTCTGGTGATTAC  Raphanus raphanistrum subsp. maritimus
EY894010       <-- AGCATCATGTCGGTGATCGTGGTGTCCTCGCTAGAGCTTCTGGTGATTAC  Raphanus raphanistrum subsp. maritimus
FD975043       <-- AGCATCATGTCGGTGATCGTGGTGTGCTCGCTAGAGCTTCTGGTGATTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769254       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978881       --> AGCATCATGTCGGTGATCGTGGTGTGCTCGCTAGAGCTTCTGGTGATTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY897798       --> AGCATCATGTCGGTGATCGTGGTGTCCTCGCTAGAGCTTCTGGTGATTAC  Raphanus raphanistrum subsp. maritimus
EY899634       --> AGCATCATGTCGGTGATCGTGGTGTCCTCGCTAGAGCTTCTGGTGATTAC  Raphanus raphanistrum subsp. maritimus
FY432965       --> AGCATCATGTCGGTGATCGTGGTGTGCTCGCTAGAGCTTCTGGTGATTAC  Raphanus sativus cv GSK3-1
EX756775       --> AGCATCATGTCGGTGATCGTGGTGTGCTCGCTAGAGCTTCTGGTGATTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947886       --> AGCATCATGTCGGTGATCGTGGTGTGCTCGCTAGAGCTTCTGGTGATTAC  Raphanus sativus cv Early Scarlet Globe
EY925607       --> AGCATCATGTCGGTGATCGTGGTGTCCTCGCTAGAGCTTCTGGTGATTAC  Raphanus raphanistrum subsp. landra
FD556923       --> AGCATCATGTCGGTGATCGTGGTGTCCTCGCTAGAGCTTCTGGTGATTAC  Raphanus raphanistrum subsp. landra
FD543207       --> AGCATCATGTCGGTGATCGTGGTGTGCTCGCTAGAGCTTCTGGTGATTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765464       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN17829        --> GCTATCGTTATTTCACACAACCCTGACAACGACACTACTAGGGTCAAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- GCTATCGTTATTTCACACAACCCTGACAACGACACTACTAGGGTCAAGTT  Raphanus sativus cv GSK3-1
EY895360       <-- GCTATCGTTATTTCACACAACCCTGACAACGACACTACTGGGGTCAAGTT  Raphanus raphanistrum subsp. maritimus
EY894010       <-- GCTATCGTTATTTCACACAACCCTGACAACGACACTACTGGGGTCAAGTT  Raphanus raphanistrum subsp. maritimus
FD975043       <-- GCTATCGTTATTTCACACAACCCTGACAACGACACTACTAGGGTCAAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769254       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978881       --> GCTATCGTTATTTCACACAACCCTGACAACGACACTACTAGGGTCAAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY897798       --> GCTATCGTTATTTCACACAACCCTGACAACGACACTACTGGGGTCAAGTT  Raphanus raphanistrum subsp. maritimus
EY899634       --> GCTATCGTTATTTCACACAACCCTGACAACGACACTACTGGGGTCAAGTT  Raphanus raphanistrum subsp. maritimus
FY432965       --> GCTATCGTTATTTCACACAACCCTGACAACGACACTACTAGGGTCAAGTT  Raphanus sativus cv GSK3-1
EX756775       --> GCTATCGTTATTTCACACAACCCTGACAACGACACTACTAGGGTCAAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947886       --> GCTATCGTTATTTCACACAACCCTGACAACGACACTACTAGGGTCAAGTT  Raphanus sativus cv Early Scarlet Globe
EY925607       --> GCTATCGTTATTTCACACAACCCTGACAACGACACTACTAGGGTCAAGTT  Raphanus raphanistrum subsp. landra
FD556923       --> GCTATCGTTATTTCACACAACCCTGACAACGACACTACTAGGGTCAAGTT  Raphanus raphanistrum subsp. landra
FD543207       --> GCTATCGTTATTTCACACAACCCTGACAACGACACTACTAGGGTCAAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765464       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN17829        --> GCCATCTGGTTCGAAGAAGATTGTTCCGAGTGGATGCAGGGCCATGATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- GCCATCTGGTTCGAAGAAGATTGTTCCTAGTGGGTGCAGGGCCATGATTG
EY895360       <-- GCCATCTGGTTCGAAGAAGATTGTTCCGAGTGGATGCAGGGCCATGATTG
EY894010       <-- GCCATCTGGTTCGAAGAAGATTGTTCCGAGTGGATGCAGGGCCATGATTG
FD975043       <-- GCCATCTGGTTCGAAGAAGATTGTTCCGAGTGGATGCAGGGCTATGATTG
EX769254       <-- ..................................................
FD978881       --> GCCATCTGGTTCGAAGAAGATTGTTCCGAGTGGATGCAGGGCTATGATTG
EY897798       --> GCCATCTGGTTCGAAGAAGATTGTTCCGAGTGGATGCAGGGCCATGATTG
EY899634       --> GCCATCTGGTTCGAAGAAGATTGTTCCGAGTGGATGCAGGGCCATGATTG
FY432965       --> GCCATCTGGTTCGAAGAAGATTGTTCCTAGTGGGTGCAGGGCCATGATTG
EX756775       --> GCCATCTGGTTCGAAGAAGATTGTTCCGAGTGGATGCAGGGCTATGATTG
FD947886       --> GCCATCTGGTTCGAAGAAGATTGTTCCTAGTGGGTGCAGGGCCATGATTG
EY925607       --> GCCATCTGGTTCGAAGAAGATTGTTCCGAGTGGATGCAGGGCCATGATTG
FD556923       --> GCCATCTGGTTCGAAGAAGATTGTTCCGAGTGGATGCAGGGCCATGATTG
FD543207       --> GCCATCTGGTTCGAAGAAGATTGTTCCGAGTGGATGCAGGGCCATGATTG
EX765464       --> ..................................................

               551    -    601
UN17829        --> GTCAAGTTGCAGGTGGTGGAAGGACCGAGAAGCCGATGCTCAAGGCAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- GTCAAGTTGCAGGTGGTGGAAGGACCGAGAAGCCGATGCTCAAGGCAGGA  Raphanus sativus cv GSK3-1
EY895360       <-- GTCAAGTTGCAGGTGGTGGAAGGACTGAGAAGCCGATGCTCAAGGCAGGA  Raphanus raphanistrum subsp. maritimus
EY894010       <-- GTCAAGTTGCAGGTGGTGGAAGGACTGAGAAGCCGATGCTCAAGGCAGGA  Raphanus raphanistrum subsp. maritimus
FD975043       <-- GTCAAGTTGCAGGTGGTGGAAGGACCGAGAAGCCGATGCTCAAGGCAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769254       <-- .............................................gAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978881       --> GTCAAGTTGCAGGTGGTGGAAGGACCGAGAAGCCGATGCTCAAGGCAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY897798       --> GTCAAGTTGCAGGTGGTGGAAGGACTGAGAAGCCGATGCTCAAGGCAG-A  Raphanus raphanistrum subsp. maritimus
EY899634       --> GTCAAGTT..........................................  Raphanus raphanistrum subsp. maritimus
FY432965       --> GTCAAGTTGCAGGTGGTGGAAGGACCGAGAAGCCGATGCTCAAGGCAGGA  Raphanus sativus cv GSK3-1
EX756775       --> GTCAAGTTGCAGGTGGTGGAAGGACTGAGAAGCCGATGCTCAAGGCAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947886       --> GTCAAGTTGCAGGTGGTGGAAGGACCGAGAAGCCGATGCTCAAGGCAGGA  Raphanus sativus cv Early Scarlet Globe
EY925607       --> GTCAAGTTGCAGGTGGTGGAAGGACCGAGAAGCCGATGCTCAAGGCAGGA  Raphanus raphanistrum subsp. landra
FD556923       --> GTCAAGTTGCAGGTGGTGGAAGGACCGAGAAGCCGATGCTCAAGGCAGGA  Raphanus raphanistrum subsp. landra
FD543207       --> GTCAAGTTGCAGGTGGTGGAAGGACCGAGAAGCCGATGCTCAAGGCAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765464       --> .............................................gAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN17829        --> AACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- AACGCGTACCACAAATACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCG
EY895360       <-- AACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCG
EY894010       <-- AACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCG
FD975043       <-- AACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCG
EX769254       <-- AACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCG
FD978881       --> AACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAG-TTCG
EY897798       --> AACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCC.........
EY899634       --> ..................................................
FY432965       --> AACGCGTACCACAAATACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCG
EX756775       --> AACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCG
FD947886       --> AGCGCGTACCACAAATACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCG
EY925607       --> AACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCG
FD556923       --> AACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCG
FD543207       --> AACGCGTACCACAAGTACCGCGTGAAGAGGAACTCATGGCCTAAGGTTCG
EX765464       --> AACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCG

               651    -    701
UN17829        --> TGGTGTGGCTATGAATCCAGTGGAGCATCCCCATGGAGGAGGTAACCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- TGGTGTGGCTATGAATCCAGTGGAGCATCCCCATGGAGGAGGTAACCATC  Raphanus sativus cv GSK3-1
EY895360       <-- TGGTGTGGCTATGAATCCAGTGGAGCATCCCCATGGAGGAGGTAACCATC  Raphanus raphanistrum subsp. maritimus
EY894010       <-- TGGTGTGGCTATGAATCCAGTGGAGCATCCCCATGGAGGAGGTAACCATC  Raphanus raphanistrum subsp. maritimus
FD975043       <-- TGGTGTGGCTATGAATCCAGTTGAGCATCCCCATGGAGGAGGTAACCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769254       <-- TGGTGTGGCTATGAATCCAGTTGAGCATCCCCATGGAGGAGGTA-TCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978881       --> TGGTGTGGCTATGAATCCAGTTGAGCATCCCCATGGAGGAG-TAACCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY897798       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY899634       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FY432965       --> TGGTGTGGCTATGAATCCAGTGGAGCATCCCCATGGAGGAGGTAACCATC  Raphanus sativus cv GSK3-1
EX756775       --> TGGTGTGGCTATGAATCCAGTTGAGCATCCCCATGGAGGAGGTAACCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947886       --> TGGTGTGGCTATGAATCCAGTGGAGCATCCCCATGGAGGAGGTAACCATC  Raphanus sativus cv Early Scarlet Globe
EY925607       --> TGGTGTGGCTATGAATCCAGTGGAGCATCCCCATGGAGGAGGTAACCATC  Raphanus raphanistrum subsp. landra
FD556923       --> TGGTGTGGCTATGAATCCAGTGGAGCATCCCCATGGAGGAGGTAACCATC  Raphanus raphanistrum subsp. landra
FD543207       --> TGGTGTGGCTATGAATCCAGTTGAGCATCCCCATGGAGGAGGTAACCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765464       --> TGGTGTGGCTATGAATCCAGTTGAGCATCCCCATGGAGGAGGTA-TCATC  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN17829        --> AGCACATTGGTCACGCCAGTACTGTTAGACGTGATGCACCTCCTGGACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- AGCACATTGGTCACGCTAGTACTGTTAGACGTGATGCACCTCCGGGACAG  Raphanus sativus cv GSK3-1
EY895360       <-- AGCACATTGGTCACGCCAGTACTGTTAGACGTGATGCACCTCCTGGACAG  Raphanus raphanistrum subsp. maritimus
EY894010       <-- AGCACATTGGTCACGCCAGTACTGTTAGACGTGATGCACCTCCTGGACAG  Raphanus raphanistrum subsp. maritimus
FD975043       <-- AGCACATTGGTCACGCCAGTACTGTTAGACGTGATGCACCTCCTGGACAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769254       <-- AGCACATTGGTCACGCCAGTACTGTTAGACGTGATGCACCTCCTGGACAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978881       --> AGCACATTGGTCACGCCAGTACTGTTAGA.....................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY897798       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY899634       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FY432965       --> AGCACATTGGTCACGCTAGTACTGTTAGACGTGATGCACCTCCGGGACAG  Raphanus sativus cv GSK3-1
EX756775       --> AGCACATTGGTCACGCCAGTACTGTTAGACGTGATGCACCTCCTGGACAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947886       --> AGCACATTGGTCACGCTAGTACTGTTAGACGTGATGCACCTCCGGGACAG  Raphanus sativus cv Early Scarlet Globe
EY925607       --> AGCACATTGGTCACGCCAGTACTGTTAGACGTGATGCACCTCCTGGACAG  Raphanus raphanistrum subsp. landra
FD556923       --> AGCACATTGGTCACGCCAGTACTGTTAGACGTGATGCACCTCCTGGACAG  Raphanus raphanistrum subsp. landra
FD543207       --> AGCACATTGGTCACGCCAGTACTGTTAGACGTGATGCACCTCCGGGACAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765464       --> AGCACATTGGTCACGCCAGTACTGTTAGACGTGATGCACCTCCTGGACAG  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN17829        --> AAGGTTGGTCTTATTGCTGCTAGGAGAACTGGTCGTCTCAGAGGTCAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- AAGGTTGGTCTTATTGCTGCTAGGAGAACTGGTCGTCTCAGAGGTCAAGC
EY895360       <-- --AGTTGGTCTTATTGCTGCTAGGAGAGCTGGTCGTCTCAGAGGTCAAGC
EY894010       <-- --AGTTGGTCTTATTGCTGCTAGGAGAGCTGGTCGTCTCAGAGGTCAAGC
FD975043       <-- AAGGTTGGTCTTATTGCTGCTAGGAGAACTGGTCGTCTCAGAGGTCAAGC
EX769254       <-- AAGGTTGGTCTTATTGCTGCTAGGAGAACTGGTCGTCTCAGAGGTCAAGC
FD978881       --> ..................................................
EY897798       --> ..................................................
EY899634       --> ..................................................
FY432965       --> AAGGTTGGTCTTATTGCTGCTAGGAGAACTGGTCGTCTCAGAGGTCAAGC
EX756775       --> AAGGTTGGTCTTATTGCTGCTAGGAGAACTGGTCGTCTCAGAGGTCAAGC
FD947886       --> AAGGTTGGTCTTATTGCTGCTAGGAGAACTGGTCGTCTCAGAGGTCAAGC
EY925607       --> AAGGTTGGTCTTATTGCTGCTAGGAGAACTGGTCGTCTCAGAGGTCAAGC
FD556923       --> AAGGTTGGTCTTATTGCTGCTAGGAGAACTGGTCGTCTCAGAGGTCAAGC
FD543207       --> AAGGTTGGTCTTATTGCTGCTAGGAGAACTGGTCGTCTCAGAGGTCAAGC
EX765464       --> AAGGTTGGTCTTATTGCTGCTAGGAGAACTGGTCGTCTCAGAGGTCAAGC

               801    -    851
UN17829        --> TGCTGCTTCTGCTGCCAAGGCCGACTAGGTTTCATAAGATATTTTTGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- TGCTGCTTCTGCTGCCAAGGCCGACTAGGTTTCATAAGATATTTTTGTTT  Raphanus sativus cv GSK3-1
EY895360       <-- TGCTGCTTCTGCTGCCAAGGCCGACTAGGTTTCATAAGATATTTTTGTTT  Raphanus raphanistrum subsp. maritimus
EY894010       <-- TGCTGCTTCTGCTGCCAAGGCCGACTAGGTTTCATAAGATATTTTTGTTT  Raphanus raphanistrum subsp. maritimus
FD975043       <-- TGCTGCTTCTGCTGCCAAGGCCGACTAGGTTTCATAAAATATTTTTGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769254       <-- TGCTGCTTCTGCTGCCAAGGCCGACTAGGTTTCATAAAATATTTTTGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978881       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY897798       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY899634       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FY432965       --> TGCTGCTTCTGCTGCCAAGGCCGACTAGGTTTCATAAGATATTTTTGTTT  Raphanus sativus cv GSK3-1
EX756775       --> TGCTGCTTCTGCTGCCAAG-CCGACTAG-TTTCATAAAATATTTTTGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947886       --> TGCTGCTTCTGCTGCCAAGGCCGACTAGGTTTCATAAGATATTTTTGTTT  Raphanus sativus cv Early Scarlet Globe
EY925607       --> TGCTGCTTCTGCTGCCAAGGCC---TAGGTTTCATAAGATATTTTTGTTT  Raphanus raphanistrum subsp. landra
FD556923       --> TGCTGCTTCTGCTGCCAAGGCC---TAGGTTTCATAAGATATTTTTGTTT  Raphanus raphanistrum subsp. landra
FD543207       --> TGCTGCTTCTGCTGCCAAGGCCGACTAGGTTTCATAAAATATTTTTGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765464       --> TGCTGCTTCTGCTGCCAAGGCCGACTAGGTTTCATAAAATATTTTTGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               851    -    901
UN17829        --> GCGTTTTGCTGTCTTTCCTTTCGGACCTTGTTGTGTTCTGAAATCTCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- GCGTTTTGCTGTCTTTCCTTTCGGACCTTGTTGTGTTCTGAAATCTCAAA  Raphanus sativus cv GSK3-1
EY895360       <-- GCGTTTTGCTGTCTTTCCTTTCGGACCTTGTTGTGTTCTGAAATCTCAAA  Raphanus raphanistrum subsp. maritimus
EY894010       <-- GCGTTTTGCTGTCTTTCCTTTCGGACCTTGTTGTGTTCTGAAATCTCAAA  Raphanus raphanistrum subsp. maritimus
FD975043       <-- GCGTTTCGCTGTGTTTCCTTTTGGACCTT---GTGTTCTGAAATCTCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769254       <-- GCGTTTCGCTGTGTTTCCTTTTGGACCTT---GTGTTCTGAAATCTCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978881       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY897798       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY899634       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FY432965       --> GCGTTTTGCTGTCTTTCCTTTCGGACCTTGTTGTGTTCTGAAATC.....  Raphanus sativus cv GSK3-1
EX756775       --> GCGTTTCGCTGTGTTTCCTTT-GGACCTTGT---GTTCTGAAATCTCAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947886       --> ACGTTTTGCTGTCTTTCCTTTCGGACCTTGTTGTGTTCTGAAATCTCAAA  Raphanus sativus cv Early Scarlet Globe
EY925607       --> GCGTTTTGCTGTCTTTCCTTTCGGACCTTGTTGTGTTCTGAAATCTCAAA  Raphanus raphanistrum subsp. landra
FD556923       --> GCGTTTTGCTGTCTTTCCTTTCGGACCTTGTTGTGTTCTGAAATCTCAAA  Raphanus raphanistrum subsp. landra
FD543207       --> GCGTTTCGCTGTGTTTCCTTTTGGACCTTGT---GTTCTGAAATCTCAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765464       --> GCGTTTCGCTGTGTTTCCTTTTGGACCTTGT---GTTCTGAAATCTCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               901    -    951
UN17829        --> AATATTTTGTTATAATCTTGTCCTTCTCTGTCGAAGTTATTATTATGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- AATATTTTGTTATAATCTTGTCCTTCTCCGTCGAAGTTATTATTATGTCT  Raphanus sativus cv GSK3-1
EY895360       <-- AATATTTTGTTATAATCTTGTCCTTCTCTGTCGAAGTTATTATTATGTCT  Raphanus raphanistrum subsp. maritimus
EY894010       <-- AATATTTTGTTATAATCTTGTCCTTCTCTGTCGAAGTTATTATTATGTCT  Raphanus raphanistrum subsp. maritimus
FD975043       <-- AA................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769254       <-- AATATTTTGTTATAATCTTGTCCTTCTCTGTCGAATTTATTATTATGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978881       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY897798       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY899634       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FY432965       --> ..................................................  Raphanus sativus cv GSK3-1
EX756775       --> A.................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947886       --> AATATATTGTTATAATCTTGTCCTTCTCCGTCGAAGTTATTATTATGTCT  Raphanus sativus cv Early Scarlet Globe
EY925607       --> AATATTTTGTTATAATCTTGTCCTTCTCTGTCGAAGTTATTATTATGTCT  Raphanus raphanistrum subsp. landra
FD556923       --> AATATTTTGTTATAATCTTGTCCTTCTCTGTCGAAGTTATTATTATGTCT  Raphanus raphanistrum subsp. landra
FD543207       --> AATATTTTGTTATAATCTTGTCCTTCTCTGTCGAATTTATTATTATGTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765464       --> AATATTTTGTTATAATCTTGTCCTTCTCTGTCGAATTTATTATTATGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               951    -   1001
UN17829        --> TTACAATTTTCATTTCGCAAGTGTTGATTATATTTGTTCATTTTTCGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- TTACAATTTTCATTTCGCAAGTGTTGATTATATTTGgcattttcg.....  Raphanus sativus cv GSK3-1
EY895360       <-- TTACAATTTTC.......................................  Raphanus raphanistrum subsp. maritimus
EY894010       <-- TTACAATTTTC.......................................  Raphanus raphanistrum subsp. maritimus
FD975043       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769254       <-- CTGCAATTTTCATTTCGCAAGTGTTGATTATATTTGTTCATTTTTCGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978881       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY897798       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY899634       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FY432965       --> ..................................................  Raphanus sativus cv GSK3-1
EX756775       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947886       --> TTACAATTTTCATTTCGCAAGTGTTGATTATATTTG..............  Raphanus sativus cv Early Scarlet Globe
EY925607       --> ..................................................  Raphanus raphanistrum subsp. landra
FD556923       --> ..................................................  Raphanus raphanistrum subsp. landra
FD543207       --> CTGCAATTTTCATTTCGCAAGTGTTGATTATATTTGTGCATT........  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765464       --> CTGCAATTTTCATTTCGCAAGTGTTGATTATATTTGTTCATTTTTCGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               1001   -   1051
UN17829        --> TGTTCTCTAATTAAACTACATATATTTCTGGTCGAAGTTGGGATGCTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- ..................................................
EY895360       <-- ..................................................
EY894010       <-- ..................................................
FD975043       <-- ..................................................
EX769254       <-- TGTTCTCTAATTAAACTACATATATTTCTGGTCGAAGTTGGGATGCTAAT
FD978881       --> ..................................................
EY897798       --> ..................................................
EY899634       --> ..................................................
FY432965       --> ..................................................
EX756775       --> ..................................................
FD947886       --> ..................................................
EY925607       --> ..................................................
FD556923       --> ..................................................
FD543207       --> ..................................................
EX765464       --> TGTTCTCTAATTAAACTACATATATTTCTGGTCGAAGTTGGGATGCTAAT

               1051   -   1101
UN17829        --> TGAATCTTGGTCTTTTTGTAACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~
FY430842       <-- ........................
EY895360       <-- ........................
EY894010       <-- ........................
FD975043       <-- ........................
EX769254       <-- TGAATCTTGGTCTTTTTGTAACGG
FD978881       --> ........................
EY897798       --> ........................
EY899634       --> ........................
FY432965       --> ........................
EX756775       --> ........................
FD947886       --> ........................
EY925607       --> ........................
FD556923       --> ........................
FD543207       --> ........................
EX765464       --> TGAATCTTGGTCTTTTTGTAACGG