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Alignment for radish unigene UN17838

               1      -     51
UN17838        --> GGTGAAGAAAAAAAAACAATACAGCTCTCTTCTCTCCTC-TTCTTCGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- ..................................................
EY918477       <-- ..................................................
EY922532       --> GGTGAAGAAAAAAAAACAATACAGCTCTCTTCTCTGCTCATTCTTCATCA
EX896159       --> ......................ggattacagCTCTCCTC-TTCTTCGTCA
FD946131       --> ......................ggattacagCTCTCCTC-TTCTTCGTCA
FD978813       --> ................ggaaagccattacagCTCTCCTC-TTCTTCGTCA
EV570086       --> ..................................................
FD965607       --> ..................................................
EY896749       --> ..................................................

               51     -    101
UN17838        --> CAAATTCTTCAAAAAAGAGA--CAATCATGGGTAAAGGTCCAGGACTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- ..................................................
EY918477       <-- ..................................................
EY922532       --> CAACTTCTTCAAA---GAGA--CAATCATGGGTAAAGGTCCAGGACTCTA
EX896159       --> CAAATTCTTCAAAAAAGAGA--CAATCATGGGTAAAGGTCCAGGACTCTA
FD946131       --> CAAATTCTTCAAAAAAGAGA--CAATCATGGGTAAAGGTCCAGGACTCTA
FD978813       --> CAAATTCTTCAAAAAAGAGAGACAATCATGGGTAAAGGTCCAGGACTCTA
EV570086       --> ..................................................
FD965607       --> ..................................................
EY896749       --> ..................................................

               101    -    151
UN17838        --> CACCGAGATCGGCAAAAAGGCCAGAGATCTTTTGTACAAGGACTACCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- ..................................................
EY918477       <-- ..................................................
EY922532       --> CACCGAGATCGGCAAAAAGGCCAGAGATCTTTTGTACAAGGACTACCAAG
EX896159       --> CACCGA--TCGGCAAAA-GGCCAGAGATCTTTTGTACAAGGACTACCAAG
FD946131       --> CACCGAGATCGGCAAAAAGGCCAGAGATCTTTTGTACAAGGACTACCAAG
FD978813       --> CACCGAGATCGGCAAAAAGGCCAGAGATCTTTTGTACAAGGACTACCAAG
EV570086       --> ..................................................
FD965607       --> ..................................................
EY896749       --> ..................................................

               151    -    201
UN17838        --> GAGACCAGAAGCTCAGTATCACCACTTACTCTTCAACCGGTGTTGCAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- ..................................................
EY918477       <-- ..................................................
EY922532       --> GAGACCAGAAGCTCAGCATCACCACTTACTCTTCAACCGGTGTTGCAATC
EX896159       --> GAGACCAGAAGCTCAGTATCACCACTTACTCTTCAACCGGGGTTGCAATC
FD946131       --> GAGACCAGAAGCTCAGTATCACCACTTACTCTTCAACCGGGGTTGCAATC
FD978813       --> GAGACCAGAAGCTCAGTATCACCACTTACTCGTCAACCGGTGTTGCAATC
EV570086       --> ..........................gACTCTTCAACCGGTGTTGCAATC
FD965607       --> ..................................................
EY896749       --> ..................................................

               201    -    251
UN17838        --> ACAACAACTGGAACAAACAAGGGAGATTTGTTTGTGGGTGATGTACTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- ..................................................
EY918477       <-- ..................................................
EY922532       --> ACAACAACTGGAACAAACAAGGGAGATTTGTTTGTGGGTGATGTACTTAC
EX896159       --> ACAACAACTGGAACAAACAAGGGAGATTTGTTTGTGGGTGATGTACTTAC
FD946131       --> ACAACAACTGGAACAAACAAGGGAGATTTGTTTGTGGGTGATGTACTTAC
FD978813       --> ACAACAACTGGAACAAACAAGGGAGATTTGTTTGTGGGTGATGTACTTAC
EV570086       --> ACAACAACTGGAACAAACAAGGGAGATTTGTTTGTGGGTGATGTACTTAC
FD965607       --> ..................................................
EY896749       --> ..................................................

               251    -    301
UN17838        --> CCAAATCAAGAACAAGAACTTAACTGCTGATATCAAAGTTGCCTCTGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- ...............................................ATT
EY918477       <-- ..................................................
EY922532       --> CCAAATCAAGAACAAGAACTTAACTGCTGATATCAAAGTTGCCTCTGATT
EX896159       --> CCAAATCAAGAACAAGAACTTAACTGCTGATATCAAAGTTGCCTCTGATT
FD946131       --> CCAAATCAAGAACAAGAACTTAACTGCTGATATCAAAGTTGCCTCTGATT
FD978813       --> CCAAATCAAGAACAAGAACTTAACTGCTGATATCAAAGTTGCCTCTGATT
EV570086       --> CCAAATCAAGAACAAGAACTTAACTGCTGATATCAAAGTTGCCTCTGATT
FD965607       --> ..................................................
EY896749       --> ..................................................

               301    -    351
UN17838        --> CTTCTATCCTTACCACTGTCACCTATGATGAGGCTACCCCTGGATTGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- CTTCTATCCTTACCACTGTCACCTATGATGAGGCTACCCCTGGATTGAAG
EY918477       <-- ..TCTATCCTTACCACTGTCAC-TATGATGAGGCTACCCCTGGATTGAAG
EY922532       --> CTTCTATCCTTACCACTGTCACCTATGATGAGGCTACCCCTGGATTGAAG
EX896159       --> CTTCTATCCTTACCACTGTCACCTATGATGAGGCTACCCCTGGATTGAAG
FD946131       --> CTTCTATCCTTACCACTGTCACCTATGATGAGGCTACCCCTGGATTGAAG
FD978813       --> CTTCTATCCTTACCACTGTCACCTATGATGAGGCTACCCCTGGATTGAAG
EV570086       --> CTTCTATCCTTACCACTGTCACCTATGATGAGGCTACCCCTGGATTGAAG
FD965607       --> ..................................................
EY896749       --> ..................................................

               351    -    401
UN17838        --> GCTATCCTTAGCGCCAAGGTGCCTGATCAGAAATCTGCCAAGGTTGAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- GCTATCCTTAGCGCCAAGGTGCCTGATCAGAAATCTGCCAAGGTTGAGCT
EY918477       <-- GCTATCCTTAGCGCCAAGGCGCCTGATCAGAAATCTGCCAAGGTTGAGCT
EY922532       --> GCTATCCTTAGCGCCAAGGCGCCTGATCAGAAATCTGCCAAGGTTGAGCT
EX896159       --> GCTATCCTTAGCGCCAAGGTGCCTGATCAGAAATCTGCCAAGGTTGAGCT
FD946131       --> GCTATCCTTAGCGCCAAGGTGCCTGATCAGAAATCTGCCAAGGTTGAGCT
FD978813       --> GCTATCCTTAGCGCCAAGGTGCCTGATCAGAAATCTGCCAAGGTTGAGCT
EV570086       --> GCTATCCTTAGCGCCAAGGTGCCTGATCAGAAATCTGCCAAGGTTGAGCT
FD965607       --> ..................................................
EY896749       --> ..................................................

               401    -    451
UN17838        --> CCAGTATCTGCATCCCCATGCAGGTATCTGCACCAGCGTTGGACTGACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- CCAGTATCTGCATCCCCATGCAGGTATCTGCACCAGCGTTGGACTGACAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918477       <-- CCAGTATCTGCATCCCCACGCAGGTATCTGCACCAGCGTTGGACTGACAG  Raphanus raphanistrum subsp. landra
EY922532       --> CCAGTATCTGCATCCCCACGCAGGTATCTGCACCAGCGTTGGACTGACAG  Raphanus raphanistrum subsp. landra
EX896159       --> CCAGTATCTGCATCCCCATGCAGGTATCTGCACCAGCGTTGGACTGACAG  Raphanus sativus cv Early Scarlet Globe
FD946131       --> CCAGTATCTGCATTCCCATGCAGGTATCTGCACCAGCGTTGGACTGACAG  Raphanus sativus cv Early Scarlet Globe
FD978813       --> CCAGTATCTGCATCCCCATGCAGGTATCTGCACCAGCGTTGGACTGACAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV570086       --> CCAGTATCTGCATCCCCACGCAGGTATCTGCACCAGCGTTGGACTGACAG  Raphanus raphanistrum subsp. landra
FD965607       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY896749       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN17838        --> CTAGCCCCGTTGTCAACTTCTCCGGTGTGATTGGAACCAGTGTGTTGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- CTAGCCCCGTTGTCAACTTCTCCGGTGTGATTGGAACCAGTGTGTTGGCT
EY918477       <-- CTAGCCCCGTTGTCAACTTCTCCGGTGTGATTGGAACCAGTGTGTTGGCT
EY922532       --> CTAGCCCCGTTGTCAACTTCTCCGGTGTGATTGGAACCAGTGTGTTGGCT
EX896159       --> CTAGCCCCGTTGTCAACTTCTCCGGTGTGATTGGAACCAGTGTGTTGGCT
FD946131       --> CTAGCCCCGTTGTCAACTTCTCCGGTGTGATTGGAACCAGTGTGTTGGCT
FD978813       --> CTAGCCCCGTTGTCAACTTCTCCGGTGTGATTGGAACCAGTGTGTTGGCT
EV570086       --> CTAGCCCCGTTGTCAACTTCTCCGGTGTGATTGGAACCAGTGTGTTGGCT
FD965607       --> ............gCAACTTCTCCGGTGTGATTGGAACCAGTGTGTTGGCT
EY896749       --> ...........................gGATTGGAACCAGTGTGTTGGCT

               501    -    551
UN17838        --> CTTGGTACCGATGTGTCCTTTGACACAGAATCTGGCAACTTCAAACATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- CTTGGTACCGATGTGTCCTTTGACACAGAATCTGGCAACTTCAAACATTT
EY918477       <-- CTTGGTACCGATGTGTCCTTTGACACAGAATCTGGCAACTTCAAACATTT
EY922532       --> CTTGGTACCGATGTGTCCTTTGACACAGAATCTGGCAACTTCAAACATTT
EX896159       --> CTTGGTACCGATGTGTCCTTTGACACAGAATCTGGCAACTTCAAACATTT
FD946131       --> CTTGGTACCGATGTGTCCTTTGACACAGAATCTGGCAACTTCAAACATTT
FD978813       --> CTTGGTACCGATGTGTCCTTTGACACAGAATCTGGCAACTTCAAACATTT
EV570086       --> CTTGGTACCGATGTGTCCTTTGACACAGAATCTGGCAACTTCAAACATTT
FD965607       --> CTTGGTACCGATGTGTCCTTTGACACAGAATCTGGCAACTTCAAACATTT
EY896749       --> CTTGGTACCGATGTGTCCTTTGACACAGAATCTGGCAACTTCAAACATTT

               551    -    601
UN17838        --> CAACGCCGGTGTGAGCTTCACCAAGGATGATTTGATTGCTTCTCTTACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- CAACGCCGGTGTGAGCTTCACCAAGGATGATTTGATTGCTTCTCTTACTC
EY918477       <-- CAACGCCGGTGTGAGCTTCACCAAGGATGATTTGATTGCTTCTCTTACTC
EY922532       --> CAACGCCGGTGTGAGCTTCACCAAGGATGATTTGATTGCTTCTCTTACTC
EX896159       --> CAACGCCGGTGTGAGCTTCACCAAGGATGATTTGATTGCTTCTCTTACTC
FD946131       --> CAACGCCGGTGTGAGCTTCACCAAGGATGATTTGATTGCTTCTCTTACTC
FD978813       --> CAACGCCGGTGTGAGCTTCACCAAGGATGATTTGATTGCTTCTCTTACTC
EV570086       --> CAACGCCGGTGTGAGCTTCACCAAGGATGATTTGATTGCTTCTCTTACTC
FD965607       --> CAACGCCTGTGTGAGCTTCACCAAGGATGATTTGATTGCTTCTCTTACTC
EY896749       --> CAACGCCGGTGTGAGCTTCACCAAGGATGATTTGATTGCTTCTCTTACTC

               601    -    651
UN17838        --> TGAATGACAAAGGTGAGAAATTGAATGCATCGTACTACCACATTGTGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- TGAACGACAAGGGTGAGAAATTGAATGCATCGTACTACCACATTGTGAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918477       <-- TGAATGACAAAGGTGAGAAATTGAATGCATCGTACTACCACATTGTGAAC  Raphanus raphanistrum subsp. landra
EY922532       --> TGAATGACAAAGGTGAGAAATTGAATGCATCGTACTACCACATTGTGAAC  Raphanus raphanistrum subsp. landra
EX896159       --> TGAACGACAAGGGTGAGAAATTGAATGCATCGTACTACCACATAGTGAAC  Raphanus sativus cv Early Scarlet Globe
FD946131       --> TGAACGACAAGGGTGAGAAATTGAATGCATCGTACTACCACATAGTGAAC  Raphanus sativus cv Early Scarlet Globe
FD978813       --> TGAACGACAAGGGTGAGAAATTGAATGCATCGTACTACCACATTGTGAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV570086       --> TGAATGACAAAGGTGAGAAATTGAATGCATCGTACTACCACATTGTGAAC  Raphanus raphanistrum subsp. landra
FD965607       --> TGAATGACAAAGGTGAGAAATTGAATGCCTCGTACTACCACATTGTGCAC  Raphanus raphanistrum subsp. maritimus
EY896749       --> TGAATGACAAAGGTGAGAAATTGAATGCATCGTACTACCACATTGTGAAC  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN17838        --> CCCTTGAAGAACACAGTGGTTGGAGCCGAGGTTAGCCACAGCTTGAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- CCGTTGAAGAGCACAGTGGTTGGAGCCGAGGTTAGCCACAGCTTGAAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918477       <-- CCCTTGAAGAACACAGTGGTTGGAGCCGAGGTTACCCACAGCTTGAAGAG  Raphanus raphanistrum subsp. landra
EY922532       --> CCCTTGAAGAACACAGTGGTTGGAGCCGAGGTTACCCACAGCTTGAAGAG  Raphanus raphanistrum subsp. landra
EX896159       --> CC................................................  Raphanus sativus cv Early Scarlet Globe
FD946131       --> CCGTTGAAGAACACAGTGGTTGGAGCCGAGGTTACCCACAGCTTGAAGAG  Raphanus sativus cv Early Scarlet Globe
FD978813       --> CCGTTGAAGAGCACAGTGGTTGGAGCCGAGGTTAGCCACAGCTTGAAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV570086       --> CCCTTGAAGAACACAGTGGTTGGAGCCGAGGTTACCCACAGCTTGAAGAG  Raphanus raphanistrum subsp. landra
FD965607       --> CCCTTGAAGAACACAGTGGTTGGAGCCGAGGTTAGCCACAGCTTGAAGGG  Raphanus raphanistrum subsp. maritimus
EY896749       --> CCCTTGAAGAACACAGTGGTTGGAGCCGAGGTTAGCCACAGCTTGAAGAG  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN17838        --> CCAAGTGAACACGATAACCGTGGGTGCTCAGCACGCTCTGGACCCATTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- CCAAGTGAACACGATAACCGTGGGTGCTCAGCACGCTCTTGACCCATTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918477       <-- CCAAGTGAACACGATAACCGTGGGTGCTCAGCACGCTCTGGACCCATTGA  Raphanus raphanistrum subsp. landra
EY922532       --> CCAAGTGA-CACGATAACCGTGGGTGCTCAGCACGCTCTGGACC-ATTGA  Raphanus raphanistrum subsp. landra
EX896159       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD946131       --> CCAAGTGAACACGATAACCGTGGGTGCTCAGCACGCTCTTGACCCATTGA  Raphanus sativus cv Early Scarlet Globe
FD978813       --> CCAAGTGAACACGATAACCGTGGGTGCTCAGCACGCTCTTGACC-ATTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV570086       --> CCAAGTGAACACGATAACCGTGGGTGCTCAGCACGCTCTGGACCCATTGA  Raphanus raphanistrum subsp. landra
FD965607       --> CCAAGTGAACACGATAACCGTGGGTGCTCAGCACGCTCTGGACCCATTGA  Raphanus raphanistrum subsp. maritimus
EY896749       --> CCAAGTGAACACGATAACCGTGGGTGCTCAGCACGCTCTGGACCCATTGA  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN17838        --> CCACGGTTAAGACACGCGTAAACAATGCTGGTATAGCCAACGCTCTGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- CCACGGTGAAGACACGCGTGAACAATGCTGGTATAGCCAACGCTCTGATC
EY918477       <-- CCACGGTTAAGACACGCGTAAACAATGCTGGTATAGCCAACGCTCTGATC
EY922532       --> CCACGGT-AAGACACGCGTAAACAATGCTGGTATAGCCA-CGCTCTGATC
EX896159       --> ..................................................
FD946131       --> CCACGGTa..........................................
FD978813       --> CCACGGTGAAGACACG..................................
EV570086       --> CCACGGTTAAGACACGCGTAAACAATGCTGGTATAGCCAACGCTCTGATC
FD965607       --> CCACGGTTAAGACACGCGTAAACAATGCTGGTATAGCCAACGCTCTGATC
EY896749       --> CCACGGTTAAGACACGCGTAAACAATGCTGGTATAGCCAACGCTCTGATC

               801    -    851
UN17838        --> CAACACGAGTGGCGTCCGAAGTCGTTCATCACCATCTCTGGAGAGGTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- CAACACGAGTGGCTTCCGAAGTCGTTCATCACCATCTCTGGAGAGGTTGA
EY918477       <-- CAACACGAGTGGCGTCCGAAGTCGTTCATCACCATCTCTGGAGAGGTTGA
EY922532       --> CAACACG...........................................
EX896159       --> ..................................................
FD946131       --> ..................................................
FD978813       --> ..................................................
EV570086       --> CAACACGAGTGGCGTCCGAAGTCGTTCATCACCATCTCTGGAGAGGTTGA
FD965607       --> CAACACGAGTGGCGTCCGAAGTCGTTCATCACCATCTCTGGAGAGGTTGA
EY896749       --> CAACACGAGTGGCGTCCTAAGTCGTTCATCACCATCTCTGGAGAGGTTGA

               851    -    901
UN17838        --> CTCTAAGGCCATCGAGAAGAGTGCTAAAGTTGGATTTGCTCTCGCTCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- CTCTAAGGCCATCGAGAAGAGTGCTAAAGTTGGATTTGCTCTCGCTCTCA
EY918477       <-- CTCTAAGGCCATCGAGAAGAGTGCTAAAGTTGGATTTGCTCTCGCTCTCA
EY922532       --> ..................................................
EX896159       --> ..................................................
FD946131       --> ..................................................
FD978813       --> ..................................................
EV570086       --> CTCTAAAGCCATCGAGAAGAGTGCTAAAGTTGGATTTGCTCTCGCTCTCA
FD965607       --> CTCTAAGGCCATCGAGAAGAGTGCTAAAGTTGGATTTGCTCTCGCTCTCA
EY896749       --> CTCTAAGGCCATCGAGAAGAGTGCTAAAGTTGGATTTGCTCTCGCTCTCA

               901    -    951
UN17838        --> AGCCTTGAGTGAAAAGAACCTCCTCCAATGTCTTCCTAATCTTTTGGAA-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- AGCCTTGAGTTAAGAGAACCTCCTCCAATGTCTTTCTAATCTTTTGGAAA
EY918477       <-- AGCCTTGAGTGAAAAGAACCTCCTCCAATGTCTTCCTAATCTTTTGGAA-
EY922532       --> ..................................................
EX896159       --> ..................................................
FD946131       --> ..................................................
FD978813       --> ..................................................
EV570086       --> AGCCTTGAGTGAAAAGAACCTCCTCCAATGTCTTCCTAATCTTTTGGA--
FD965607       --> AGCCTTGAGTGAAAAGAACCTCCTCCAATGTCTTCCTAATCTTTTGGAA-
EY896749       --> AGCCTTGAGTGAAAAGAACCTCATCCAATGTCTTCCTAATCTTTTGGAA-

               951    -   1001
UN17838        --> CTAATCTCTGTCTGTTTTTTTTTTT-CCTTTAAAAATTGTTCATTTGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- CCAATCTCTCTCTGTTTTCTTTTTT-CCTTTAAAAATTGTTCATTTGTTT
EY918477       <-- CTAATCTCTGTCTGTTTTTTTTTTT-CCTTTAAAAATTGTTCATTTGTTT
EY922532       --> ..................................................
EX896159       --> ..................................................
FD946131       --> ..................................................
FD978813       --> ..................................................
EV570086       --> CTAATCTCTGTCTGTTTT................................
FD965607       --> CTAATCTCTGTCTGTTTTTTTTTT--CCTTTAAAAATTGTTCATTTGTTT
EY896749       --> CTAATCTCTGTCTGTTTTTTTTTTTTCCTTTAAAAATTGTTCATTTGTTT

               1001   -   1051
UN17838        --> TCTTTTTTTACAAAATAAGAAGAAAAATAAAATACTATGAAAGGATCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974985       <-- TCTTTTTT-ACAAAATAAGAAGAAAAATAAAATACTATGAAAGGATCGTC
EY918477       <-- TCTTTTTTTACAAAATAAGAAGAAAAATAAAATACTATGAAAGGATCTTC
EY922532       --> ..................................................
EX896159       --> ..................................................
FD946131       --> ..................................................
FD978813       --> ..................................................
EV570086       --> ..................................................
FD965607       --> TCTTTTTTTACAAAATAAGAAGAAAAATAAAATACTATGAAAGGATCGTC
EY896749       --> TCTTTTTTTAC.......................................

               1051   -   1101
UN17838        --> TTTGAAGATGAACCATAC
                   ~~~~~~~~~~~~~~~~~~
FD974985       <-- TTTGAAGATGAACCATAC
EY918477       <-- TTTGAAGATG........
EY922532       --> ..................
EX896159       --> ..................
FD946131       --> ..................
FD978813       --> ..................
EV570086       --> ..................
FD965607       --> TTTGAAGATGAACC....
EY896749       --> ..................