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Alignment for radish unigene UN17926

               1      -     51
UN17926        --> CGGGAAGAAATCACAACTCTTGATTGATCAAAAACATGTGCACTTTGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- CGGGAAGAAATCACAACTCTTGATTAATCAAAAACATGTGCACTTTGCCA
EY912904       <-- .GGGAAGAAATCACAACTCTTGATTGATCAAAAACATGTGCACTTTGCCA
EV551635       <-- ..................................................
EV529057       <-- ..................................................
EV570347       <-- ..................................................
EV538571       <-- ..................................................
EV534907       <-- ..................................................
EX755902       <-- ..................................................
EV548307       <-- ..................................................
EY916615       <-- ..................................................
FD981939       <-- ..................................................
FD973636       <-- ..................................................
FD972867       <-- ..................................................
FD971763       <-- ..................................................
EY901589       --> CGGGAAGAAATCACAACTCTTGATTAATCAAAAACATGTGCACTTTGCCA
EY909232       --> .GGGAAGAAATCACAACTCTTGATTGATCAAAAACATGTGCACTTTGCCA
FD984562       --> ..GGAAGAAACCACAACTCTTGATTGATCAAAAACATGTGCACTTTGCCA
FD982786       --> .........................GATCAAAAACATGTGCACTTTGCCA
FD968670       --> .............................AAAAACATGTGCACTTTGCCA
EV544004       --> ..............................................GCCA
EY909540       --> ..............................................GCCA
EY912267       --> ..............................................GCCA
FD977609       --> ..............................................GCCA
FD969286       --> ..............................................aCCA
EV531575       --> ..................................................
EV532891       --> ..................................................
EX753327       --> ..................................................
EY895631       --> ..................................................
EV574659       --> ..................................................
EV546700       --> ..................................................
EX767838       --> ..................................................
FD544460       --> ..................................................
FD958564       --> ..................................................

               51     -    101
UN17926        --> AGTAGAAACAGATTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- AGTAGAAACAGATTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
EY912904       <-- AGTAGAAACAGATTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
EV551635       <-- ....GAAACAGATTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
EV529057       <-- ......AACAGATTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
EV570347       <-- ................GATCGATTCTGGTCACAACCGAGTTGCAACATAT
EV538571       <-- ......................TTCTGGTCACAACTGAGTTGCAACATAT
EV534907       <-- ........................CTGGTCACAACTGAGTTGCAACATAT
EX755902       <-- .....................................AGTTGCAACATAT
EV548307       <-- ..................................................
EY916615       <-- ..................................................
FD981939       <-- ..................................................
FD973636       <-- ..................................................
FD972867       <-- ..................................................
FD971763       <-- ..................................................
EY901589       --> AGTAGAAACAGATTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
EY909232       --> AGTAGAAACAGATTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
FD984562       --> AGTAGAAACAGATTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
FD982786       --> AGTAAAAACAGATTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
FD968670       --> AGTAAAAACAGATTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
EV544004       --> AGTAGAAACAGATTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
EY909540       --> AGTAGAAACAGATTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
EY912267       --> AGTAGAAACAGATTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
FD977609       --> AGTAGAAACAGATTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
FD969286       --> AGTAGAAACAGATTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
EV531575       --> ...gGAAACAGATTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
EV532891       --> ...gGAAACAGATTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
EX753327       --> ...gGAAACAGATTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
EY895631       --> ...gGAAACAGACTTTGATCGATTCTGGTCACAACTGAGTTGCAACATAT
EV574659       --> ..caaAAACAGATTTTGATCGATTCTGGTCACAACCGAGTTGCAACATAT
EV546700       --> ................GATCGATTCTGGTCACAACTGAGTTGCAACATAT
EX767838       --> ................GATCGATTCTGGTCACAACTGAGTTGCAACATAT
FD544460       --> ................GATCGATTCTGGTCACAACTGAGTTGCAACATAT
FD958564       --> ........................................TGCAACATAT

               101    -    151
UN17926        --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
EY912904       <-- TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
EV551635       <-- TT-GTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
EV529057       <-- TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
EV570347       <-- TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACGAAACAAGAAAA
EV538571       <-- TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
EV534907       <-- TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
EX755902       <-- TT-GTAGTACACAGGAAATACAAGAAGCTCAGTA-TACAAAACAAGAAAA
EV548307       <-- .....AGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
EY916615       <-- ..........................GCTCAGTAATACAAAACAAGAAAA
FD981939       <-- ..........................GCTCAGTAATACAAAACAAGAAAA
FD973636       <-- ........................................AACAAGAAA-
FD972867       <-- ..................................................
FD971763       <-- ..................................................
EY901589       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
EY909232       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
FD984562       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
FD982786       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
FD968670       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
EV544004       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
EY909540       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
EY912267       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
FD977609       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
FD969286       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
EV531575       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
EV532891       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
EX753327       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
EY895631       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAGA
EV574659       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACGAAACAAGAAAA
EV546700       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
EX767838       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
FD544460       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA
FD958564       --> TTTGTAGTACACAGGAAATACAAGAAGCTCAGTAATACAAAACAAGAAAA

               151    -    201
UN17926        --> GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAAA-G
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- GCACTCTAAGACAAAGCTGTTGGATTCGGACGACAATGACAAAAAAAA-G
EY912904       <-- GCACTCTAAGACAAAACTGTTGGATTCGGACAACAATGACAAAAAAAA-G
EV551635       <-- GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAAA-G
EV529057       <-- GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAAA-G
EV570347       <-- GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAAA-G
EV538571       <-- GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAAAAG
EV534907       <-- GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAAA-G
EX755902       <-- GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAA--G
EV548307       <-- GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAA--G
EY916615       <-- GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAA--G
FD981939       <-- GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAA--G
FD973636       <-- GCACTCTAAGACAAAGCTGTTGGAT-CGGACAACAATGACAAAAA--A-G
FD972867       <-- ..................................................
FD971763       <-- ..................................................
EY901589       --> GCACTCTAAGACAAAGCTGTTGGATTCGGACGACAATGACAAAAAAAA-G
EY909232       --> GCACTCTAAGACAAAACTGTTGGATTCGGACAACAATGACAAAAAAAA-G
FD984562       --> GCACTCTAAGACGAAGCTGTTGGATTCGGACAACAATGACAAAAAAAA-G
FD982786       --> GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAAAAG
FD968670       --> GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAAA-G
EV544004       --> GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAA--G
EY909540       --> GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAAA-G
EY912267       --> GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAAA-G
FD977609       --> GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAAA-G
FD969286       --> GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAA--G
EV531575       --> GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAA--G
EV532891       --> GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAAA-G
EX753327       --> GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAAG-G
EY895631       --> GCACTCTAAGACAAAGCTGCTGGATTCGGACAACAATGACAAAAAAAA-G
EV574659       --> GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAAA-G
EV546700       --> GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAAA-G
EX767838       --> GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAAA-G
FD544460       --> GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAAA-G
FD958564       --> GCACTCTAAGACAAAGCTGTTGGATTCGGACAACAATGACAAAAAAAA-G

               201    -    251
UN17926        --> TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EY912904       <-- TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EV551635       <-- TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EV529057       <-- TACTACTACGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EV570347       <-- TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EV538571       <-- TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGACAAGAAGGTTTCCCA
EV534907       <-- TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EX755902       <-- TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EV548307       <-- TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EY916615       <-- TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
FD981939       <-- TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
FD973636       <-- TACTACTATGCTAGAGATTCTTGTTT-GCTTTGGGCAAGAAGGTTTCCCA
FD972867       <-- ........................TTTGCTTTGGGCAAGAAGGTTTCCCA
FD971763       <-- ..................................................
EY901589       --> TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EY909232       --> TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
FD984562       --> TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
FD982786       --> TACTACTATGCTAGAAATTCTTGTTTTGCTTTGGGCAAAAAGGTTTCCCA
FD968670       --> TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EV544004       --> TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EY909540       --> TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EY912267       --> TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
FD977609       --> TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
FD969286       --> TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EV531575       --> TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EV532891       --> TACTACTACGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EX753327       --> TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EY895631       --> TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EV574659       --> TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EV546700       --> TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
EX767838       --> TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
FD544460       --> TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA
FD958564       --> TACTACTATGCTAGAGATTCTTGTTTTGCTTTGGGCAAGAAGGTTTCCCA

               251    -    301
UN17926        --> CCATCCC-GGTTCATACTTGGGGTACGGCGCCACCCAATTCTTAGGCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- CCATCCC-GGTTCATACTTGGGGTACGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912904       <-- CCATCCC-GGTTCATACTTGGGGTACGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551635       <-- CCATCCCCGGTTCATACTTGGGGTACGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV529057       <-- CCATCCCCGGTTCATACTTGGGGTATGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. maritimus
EV570347       <-- CCATCCC-GGTTCATACTTGGGGTATGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. landra
EV538571       <-- CCATCCC-GGTTCATACTTGGGGTACAGCGCCACCCAATTCCTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV534907       <-- CCATCCC-GGTTCATACTTGGGGTACGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755902       <-- CCATCCC-GGTTCATACTTGGGGTACGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548307       <-- CCATCCC-GGTTCATACTTGGGGTACGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916615       <-- CCATCCC-GGTTCATACTTGGGGTATGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981939       <-- CCATCCC-GGTTCATACTTGGGGTACGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD973636       <-- CCATCCC-GGTTCATACTTGGGGTACGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972867       <-- CCATCCC-GGTTCATACTTGGGGTACGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971763       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901589       --> CCATCCC-GGTTCATACTTGGGGTACGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909232       --> CCATCCC-GGTTCATACTTGGGGTACGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984562       --> CCATCCC-GGTTCATACTTGGGGTACGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. landra
FD982786       --> CCATCCC-GGTTCATACTTGGGGTATGGCGCCCCCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. landra
FD968670       --> CCATCCC-GGTTCATACTTGGGGTACGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544004       --> CCATCCC-GGTTCATACTTGGGGTACGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909540       --> CCATCCC-GGTTCATACTTGGGGTATGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY912267       --> CCATCCC-GGTTCATACTTGGGGTATGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977609       --> CCATCCC-GGTTCATACTTGGGGTACGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969286       --> CCATCCC-GGTTCATACTTGGGGTACGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531575       --> CCATCCC-GGTTCATACTTGGGGTATGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. maritimus
EV532891       --> CCATCCC-GGTTCATACTTGGGGTATGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. maritimus
EX753327       --> CCATCCC-GGTTCATACTTGGGGTATGGCGCCACCCAATCCTTAGGCTTG  Raphanus raphanistrum subsp. maritimus
EY895631       --> CCATCCC-GGTTCATACTTGGGGTATGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. maritimus
EV574659       --> CCATCCC-GGTTCATACTTGGGGTATGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. landra
EV546700       --> CCATCCC-GGTTCATACTTGGGGTACGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX767838       --> CCATCCC-GGTTCATACTTGGGGTATGGCGCCCCCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544460       --> CCATCCC-GGTTCATACTTGGGGTATGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958564       --> CCATCCC-GGTTCATACTTGGGGTATGGCGCCACCCAATTCTTAGGCTTG  Raphanus raphanistrum subsp. maritimus

               301    -    351
UN17926        --> TCGAACTCTAAAGAAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- TCGAACTCTAAAGAAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
EY912904       <-- TCGAACTCTAAAGAAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
EV551635       <-- TCGAACTCTAAAGAAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
EV529057       <-- TCGAACTCTAAAGTAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
EV570347       <-- TCGAACTCTAAAGTAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
EV538571       <-- TCGAACTCTAAAGAAATAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
EV534907       <-- TCGAACTCTAAAGAAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
EX755902       <-- TCGAACTCTAAAGTAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
EV548307       <-- TCGAACTCTAAAGTAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
EY916615       <-- TCGAACTCTAAAGAAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
FD981939       <-- TCGAACTCTAAAGTAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
FD973636       <-- TCGAACTCTAAAGAAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
FD972867       <-- TCGAACTCTAAAGAAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
FD971763       <-- ............GAAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
EY901589       --> TCGAACTCTAAAGAAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
EY909232       --> TCGAACTCTAAAGAAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
FD984562       --> TCGAACTCTAAAGAAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
FD982786       --> TCGAACTCTAAAGTAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
FD968670       --> TCGAACTCTAAAGAAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
EV544004       --> TCGAACTCTAAAGTAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
EY909540       --> TCGAACTCTAAAGAAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
EY912267       --> TCGAACTCTAAAGAAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
FD977609       --> TCGAACTCTAAAGTAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
FD969286       --> TCGAACTCTAAAGAAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
EV531575       --> TCGAACTCTAAAGTAGTAGGAATGAAGGCCAAGGCTTCATCAAGAGAGGT
EV532891       --> TCGAACTCTAAAGTAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
EX753327       --> TCGAACTCTAAAGTAGTAGGAATGAAGGCCAAGGCTTCATCAAGAGAGGT
EY895631       --> TCGAACTCTAAAGTAGTAGGAATGAAGGCCAAGGCTTCATCAAGAGAGGT
EV574659       --> TCGAACTCTAAAGTAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
EV546700       --> TCGAACTCTAAAGAAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
EX767838       --> TCGAACTCTAAAGAAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
FD544460       --> TCGAACTCTAAAGAAGTAAGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT
FD958564       --> TCGAACTCTAAAGTAGTAGGAGTGAAGGCCAAGGCTTCATCAAGAGAGGT

               351    -    401
UN17926        --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
EY912904       <-- AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTC.......
EV551635       <-- AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
EV529057       <-- AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
EV570347       <-- AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
EV538571       <-- AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
EV534907       <-- AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
EX755902       <-- AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
EV548307       <-- AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
EY916615       <-- AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
FD981939       <-- AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
FD973636       <-- AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
FD972867       <-- AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
FD971763       <-- AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
EY901589       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
EY909232       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTC.......
FD984562       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
FD982786       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
FD968670       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCA..................
EV544004       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
EY909540       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
EY912267       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
FD977609       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
FD969286       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
EV531575       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGTACG
EV532891       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
EX753327       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
EY895631       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
EV574659       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
EV546700       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
EX767838       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
FD544460       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG
FD958564       --> AGCTTCAAAGGAATCAGCTAGAACTCGATCCAACCTTAACTTCATGAACG

               401    -    451
UN17926        --> TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
EY912904       <-- ..................................................
EV551635       <-- TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
EV529057       <-- TGATCCAGGGGCCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
EV570347       <-- TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
EV538571       <-- TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
EV534907       <-- TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
EX755902       <-- TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
EV548307       <-- TGATCCAGGGACCATTGGTGGAGACAAAAGCGACGGCAGGGCGACGGAGC
EY916615       <-- TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
FD981939       <-- TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
FD973636       <-- TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
FD972867       <-- TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
FD971763       <-- TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
EY901589       --> TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
EY909232       --> ..................................................
FD984562       --> TGATCCAGGGACCATTGATGGAGACAAGAGCGACGGCAGGGCGACGGAGC
FD982786       --> TGATCCAGGGACCATTGGTGGAGA..........................
FD968670       --> ..................................................
EV544004       --> TGATCCAGGGACCATTGGTGGAGACAAAAGCGACGGCAGGGCGACGGAGC
EY909540       --> TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
EY912267       --> TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
FD977609       --> TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
FD969286       --> TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
EV531575       --> TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
EV532891       --> TGATCCAGGGGCCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
EX753327       --> TGATCCGGGGACCATTCGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
EY895631       --> TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
EV574659       --> TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
EV546700       --> TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
EX767838       --> TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC
FD544460       --> TGATCCAGGGACCATTGGTGGAGACAAGGGCGACGGCAGGGCGACGGAGC
FD958564       --> TGATCCAGGGACCATTGGTGGAGACAAGAGCGACGGCAGGGCGACGGAGC

               451    -    501
UN17926        --> CTTTGAGTGATCTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- CTTTGAGTGATGTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912904       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551635       <-- CTTTGAGTGATGTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV529057       <-- CTTTGAGTGATCTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. maritimus
EV570347       <-- CTTTGAGTGATCTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACAAG  Raphanus raphanistrum subsp. landra
EV538571       <-- CTTTGAGTGATGTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV534907       <-- CTTTGAGTGATGTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755902       <-- CTTTGAGTGATGTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548307       <-- CTTTGAGTGATCTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916615       <-- CTTTGAGTGATCTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981939       <-- CTTTGAGTGATCTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD973636       <-- CTTTGAGTGATGTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972867       <-- CTTTGAGTGATGTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971763       <-- CTTTGAGTGATGTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901589       --> CTTTGAGTGATGTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909232       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984562       --> CTTTGAGTGATGTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. landra
FD982786       --> ..................................................  Raphanus raphanistrum subsp. landra
FD968670       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544004       --> CTTTGAGTGATCTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909540       --> CTTTGAGTGATCTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY912267       --> CTTTGAGTGATCTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977609       --> CTTTGAGTGATCTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969286       --> CTTTGAGTGATGTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531575       --> CTTTGAGTGATCTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. maritimus
EV532891       --> CTTTGAGTGATCTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. maritimus
EX753327       --> CTTTGAGTGATCTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. maritimus
EY895631       --> CTTTGAGTGATCTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. maritimus
EV574659       --> CTTTGAGTGATCTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACAAG  Raphanus raphanistrum subsp. landra
EV546700       --> CTTTGAGTGATGTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX767838       --> CTTTGAGTGATCTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544460       --> CTTTGAGTGATCTTGGGGAACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958564       --> CTTTGAGTGATCTTGGGGGACTTGTCGAGGAACTTAGGCTCGATGACGAG  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN17926        --> CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
EY912904       <-- ..................................................
EV551635       <-- CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
EV529057       <-- CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
EV570347       <-- CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
EV538571       <-- CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
EV534907       <-- CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
EX755902       <-- CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
EV548307       <-- CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
EY916615       <-- CCAGGAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
FD981939       <-- CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
FD973636       <-- CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
FD972867       <-- CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
FD971763       <-- CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
EY901589       --> CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
EY909232       --> ..................................................
FD984562       --> CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
FD982786       --> ..................................................
FD968670       --> ..................................................
EV544004       --> CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
EY909540       --> CCAGGAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
EY912267       --> CCAGGAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
FD977609       --> CC................................................
FD969286       --> CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
EV531575       --> CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
EV532891       --> CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
EX753327       --> CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
EY895631       --> CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTGACGAAGACGCTCGA
EV574659       --> CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
EV546700       --> CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
EX767838       --> CC................................................
FD544460       --> CCAGAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA
FD958564       --> CCAAAAGTCTAGCTCCTTTTCATTCTCTCCGTAGTAACGAAGACGCTCGA

               551    -    601
UN17926        --> ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTGGCGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- ACAATTGCTCCCGAAAGTt...............................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912904       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551635       <-- ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTTGCGTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV529057       <-- ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAGCTTGGCGTTC  Raphanus raphanistrum subsp. maritimus
EV570347       <-- ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTTGCGTTC  Raphanus raphanistrum subsp. landra
EV538571       <-- ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTGGCGTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV534907       <-- ACAATTGCTCCTGAAAGCGTTCCTCTTCGTCAAGCATGAACTTGGCGTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755902       <-- ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTGGCGTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548307       <-- ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTGGCGTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916615       <-- ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTTGCGTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981939       <-- ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTGGCGTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD973636       <-- ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTGGCGTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972867       <-- ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTGGCGTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971763       <-- ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTGGCGTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901589       --> ACAATTGCTCCCGAAAGTt...............................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909232       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984562       --> ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTTGCGTTC  Raphanus raphanistrum subsp. landra
FD982786       --> ..................................................  Raphanus raphanistrum subsp. landra
FD968670       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544004       --> ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTGGCGTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909540       --> ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTTGCGTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY912267       --> ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTTGCGTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977609       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969286       --> ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTGGCGTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531575       --> ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTGGCGTTC  Raphanus raphanistrum subsp. maritimus
EV532891       --> ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAGCTTGGCGTTC  Raphanus raphanistrum subsp. maritimus
EX753327       --> ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTGGCGTTC  Raphanus raphanistrum subsp. maritimus
EY895631       --> ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTGGCGTTC  Raphanus raphanistrum subsp. maritimus
EV574659       --> ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTTGCGTTC  Raphanus raphanistrum subsp. landra
EV546700       --> ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTTGCGTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX767838       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544460       --> ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTTGCGTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958564       --> ACAATTGCTCCTGAAAGTGTTCCTCTTCGTCAAGCATGAACTTGGCGTTC  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN17926        --> GCAACCAGGAAGTAGTACTTACTGCTAACTCCCTTATTATCAGACTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912904       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551635       <-- GCAACCAGGAAGTAGTACTTACTGCTAACTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV529057       <-- GCTACCAGGAAGTAGTACTTGCTGCTAACTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. maritimus
EV570347       <-- GCAACCAGGAAGTAGTACTTACTGCTAACTCCCTTATTATCAGGCTGTTG  Raphanus raphanistrum subsp. landra
EV538571       <-- GCAACCAGGAAGTAGTACTTACTGCTTTCTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV534907       <-- GCAACCAGGAAGTAGTACTTACTGCTCTCTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755902       <-- GCAACCAGGAAGTAGTACTTACTGCTCTCTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548307       <-- GCTACCAGGAAGTAGTACTTGCTGCTAACTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916615       <-- GCAACCAGGAAGTAGTACTTACTGCTAACTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981939       <-- GCTACCAGGAAGTAGTACTTGCTGCTAACTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD973636       <-- GCAACCAGGAAGTAGTACTTACTGCTCTCTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972867       <-- GCAACCAGGAAGTAGTACTTACTGCTCTCTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971763       <-- GCAACCAGGAAGTAGTACTTACTGCTCTCTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901589       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909232       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984562       --> GCTACCAGGAAGTAGTACTTGCTGCTCTCTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. landra
FD982786       --> ..................................................  Raphanus raphanistrum subsp. landra
FD968670       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544004       --> GCTACCAGGAAGTAGTACTTGCTGCTAACTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909540       --> GCAACCAGGAAGTAGTACTTACTGCTAACTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY912267       --> GCAACCAGGAAGTAGTACTTACTGCTAACTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977609       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969286       --> GCAACCAGGAAGTAGTACTTACTGCTCTCTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531575       --> GTTACCAGGAAGTAGTACTTGCTGCTGACTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. maritimus
EV532891       --> GCTACCAGGAAGTAGTACTTGCTGCTAACTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. maritimus
EX753327       --> GCTACCAGGAAGTAGTACTTGCTGCTAACTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. maritimus
EY895631       --> GCTACCAGGAAGTAGTACTTGCTGCTAACTCCCTTATTA...........  Raphanus raphanistrum subsp. maritimus
EV574659       --> GCAACCAGGAAGTAGTACTTACTGCTAACTCCCTTATTATCAGGCTGTTG  Raphanus raphanistrum subsp. landra
EV546700       --> GCAACCAGGAAGTAGTACTTACTGCTAACTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX767838       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544460       --> GCAACCAGGAAGTAGTACTTACTGCTAACTCCCTTATTATCAGACTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958564       --> GCTACCAGGAAGTAGTACTTGCTGCTAACTCCCTTATT............  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN17926        --> TTCAACGGAGGAGGTGGCAGCGGTTATGAAAGAGGAGGAGGAGAAATGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912904       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551635       <-- TTCAACGGAGGAGGTGGCAGCGGTTATGAAAGAGGAGGAGGAGAAATGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV529057       <-- TTCAACGGAGGAGGTGGCAGCTGTTATGAAAGAGGAGGAGGAGAAATGTG  Raphanus raphanistrum subsp. maritimus
EV570347       <-- TTCAACGGAGGAGGTGGCAGCGGTTATGAAAGAGGAGGAGGAGAAATGTG  Raphanus raphanistrum subsp. landra
EV538571       <-- TTCAACGGA---GGTGGCAGCGGTTATGAAAGAG----GAGAG--ATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV534907       <-- TTCAACGGA---GGTGGCAGCGGTTATGAAAGAG----GAGAG--ATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755902       <-- TTCAACGGA---GGTGGCAGCGGTTATGAAAGAG----GAGAG--ATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548307       <-- TTCAACGGA---GGTGGCAGCGGTTATGAAAGAGGAGGAGGAGAAATGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916615       <-- TTCAACGGAGGAGGTGGCAGCGGTTATGAAAGAGGAGGAGGAGAAATGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981939       <-- TTCAACGGA---GGTGGCAGCGGTTATGAAAGAGGAGGAGGAGAAATGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD973636       <-- TTCAACGGA---GGTGGCAGCGGTTATGAAAGAG----GAGAG--ATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972867       <-- TTCAACGGA---GGTGGCAGCGGTTATGAAAGAG----GAGAG--ATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971763       <-- TTCAACGGA---GGTGGCAGCGGTTATGAAAGAG----GAGAG--ATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901589       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909232       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984562       --> TTCAAC............................................  Raphanus raphanistrum subsp. landra
FD982786       --> ..................................................  Raphanus raphanistrum subsp. landra
FD968670       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544004       --> TTCAACGGAGG---TGGCAGCGGTTATGAAAGAGGAGGAGGAGAAATGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909540       --> TTCAACGGAGGAGGTGGCAGCGGTTATGAAAGAGGAGGAGGAGAAATGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY912267       --> TTCAACGGAGGAGGTGGCAGCGGTTATGAAAGAGGAGGAGGAGAAATGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977609       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969286       --> TTCAACGGAGG---TGGCAGCGGTTATGAAAGAGGAG----AGA--TGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531575       --> TTCAACGGAGGAGGTGGCAGCTGTTATGAAAGAGGAGGAGGAGAAATGTG  Raphanus raphanistrum subsp. maritimus
EV532891       --> TTCAACGGAGGAGGTGGCAGCTGTTATGAAAGAGGAGGAGGAGAAATGTG  Raphanus raphanistrum subsp. maritimus
EX753327       --> TTCAACGGAGGAGGTGGCAGCGGTTATGAAAGAGGAGGAGGAGAAATGTG  Raphanus raphanistrum subsp. maritimus
EY895631       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV574659       --> TTCAACGGAGGAGGTGGCAGCGGTTATGAAAGAGGAGGAGGAGAAATGTG  Raphanus raphanistrum subsp. landra
EV546700       --> TTCAACGGAGGAGGTGGCAGCGGTTATGAAAGAGGAGGAGGAGAAATGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX767838       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544460       --> TTCAACGGAGGAGGTGGCAGCGGTTATGAAAGAGGGGGAGGAGAAATGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958564       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN17926        --> AGGATAGAGACAGAGGCTGCTGCTGC---GGAGAGAGATGGAGCTTATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912904       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551635       <-- AGGATAGAGACAGAGGCTGTTGCTGC---GGAGAGGGATGGAGCTTATTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV529057       <-- AGGATAGAGACAGAGGCTGCTGCTGCTGAGGAGAGAGATGGAGCTTATTT  Raphanus raphanistrum subsp. maritimus
EV570347       <-- AGGATAGAGACAGAGGCTGTTGCTGC---GGAGAGGGATGGAGCTTATTC  Raphanus raphanistrum subsp. landra
EV538571       <-- AGGATAGAGACAGAGGCTGCTGCTGC---TGAGAGAGATGGAGCTTATTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV534907       <-- AGGATAGAGACAGAGGCTGCTGCTGC---GGAGAGAGATGGAGCTTATTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755902       <-- AGGATAGAGACAGAGGCTGCTGCTGC---GGAGAGAGATGGAGCTTATTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548307       <-- ACGATAGAGACAGAGGCTGCTGCTGC---GGGGAGAGATGGAGCTTATTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916615       <-- AGGATAGAGACAGAGGCTGTTGCTGC---GGAGAGGGATGGAGCTTATTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981939       <-- ACGATAGAGACAGAGGCTGCTGCTGC---GGGGAGAGATGGAGCTTATTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD973636       <-- AGGATAGAGACAGAGGCTGCTGCTGC---GGAGAGAGATGGAGCTTATTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972867       <-- AGGATAGAGACAGAGGCTGCTGCTGC---GGAGAGAGATGGAGCTTATTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971763       <-- AGGATAGAGACAGAGGCTGCTGCTGC---GGAGAGAGATGGAGCTTATTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901589       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909232       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984562       --> ..................................................  Raphanus raphanistrum subsp. landra
FD982786       --> ..................................................  Raphanus raphanistrum subsp. landra
FD968670       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544004       --> ACGATAGAGACAGAGGCTGCTGCTGC---GGGGAGAGATGGAGCTTA...  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909540       --> AGGATAGAGACAGAGGCTGTTGCTGC---GGAGAGGGATGGAGCTTATTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY912267       --> AGG...............................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977609       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969286       --> AGGATAGAGACAGAGGCTGCTGCTGC---GGAGAGAGATGGAGCTTAT..  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531575       --> AGGATAGAGACAGAGGCTGCTGCTGCTGAGGAGAGAGATGGAGCTTATTT  Raphanus raphanistrum subsp. maritimus
EV532891       --> AGGATAGAGACAGAGGCTGCTGCTGCTGAGGAGAGAGATGGAGCTTATTT  Raphanus raphanistrum subsp. maritimus
EX753327       --> AGGATAGAGACAGAGGCTGTTGCTGC---GGAGAGGGATGGAGCTTATTC  Raphanus raphanistrum subsp. maritimus
EY895631       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV574659       --> AGGATAGAGACAGAGGCTGTTGCTGC---GGAGAGGGATGGAGCTTATTC  Raphanus raphanistrum subsp. landra
EV546700       --> AGGATAGAGACAGAGGCTGTTGCTGC---GGAGAGGGATGGAGCTTATTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX767838       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544460       --> AGGATAGAGACAGAGGCTGTTGCTGC---GGAGAGGGATGGAGCTTATTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958564       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN17926        --> GTCTGCTTGGGAAGAAGAGTAGAGGAGACGAGTAACGGTTTCGTACGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- ..................................................
EY912904       <-- ..................................................
EV551635       <-- GTCTGCTTGGGAAGAAGAGTAGAGGAGACGAGTAACGGTTTCGTACGGCA
EV529057       <-- GTCTGCTTGGGAAGAAGAGTAGAGGAGAAGAGTAACGGTTTCGTACGGCA
EV570347       <-- GTCTGCTTGGGAAGAAGAGTAGAGGAGACGAGTAACGGTTTCGTACGGCA
EV538571       <-- GTCTGCTTGGGAAGAAGAGTAGAGGAGACGAGTAACGGTTTCGTACGGCA
EV534907       <-- GTCTGCTTGGGAAGAAGAGTAGAGGAGACGAGTAACGGTTTCGTACGGCA
EX755902       <-- GTCTGCTTGGGAAGAAGAGTAGAGGAGACGAGTAACGGTTTCGTACGGCA
EV548307       <-- GTCTGCTTCGGAAGAAGAGTAGAGGAGACGAGTAACGGTTTCGTACGGCA
EY916615       <-- GTCTGCTTGGGAAGAAGAGTAGAGGAGACGAGTAACGGTTTCGTACGGCA
FD981939       <-- GTCTGCTTCGGAAGAAGAGTAGAGGAGACGAGTAACGGTTTCGTACGGCA
FD973636       <-- GTCTGCTTGGGAAGAAGAGTAGAGGAGACGAGTAACGGTTTCGTACGGCA
FD972867       <-- GTCTGCTTGGGAAGAAGAGTAGAGGAGACGAGTAACGGTTTCGTACGGCA
FD971763       <-- GTCTGCTTGGGAAGAAGAGTAGAGGAGACGAGTAACGGTTTCGTACGGCA
EY901589       --> ..................................................
EY909232       --> ..................................................
FD984562       --> ..................................................
FD982786       --> ..................................................
FD968670       --> ..................................................
EV544004       --> ..................................................
EY909540       --> ..................................................
EY912267       --> ..................................................
FD977609       --> ..................................................
FD969286       --> ..................................................
EV531575       --> GTCTGCTTGGGAAGAAGAGTAGAGGAGAAGAGTAACGGTTTCGTACGGCA
EV532891       --> GTCTGCTTGGGAAGAAGAGTAGAGGAGAAGAGTAACGGTTTCGTACGGCA
EX753327       --> GTCTGCTTGGGAAGAAGAGTAGAGGAGACGAGTAACGGTT..........
EY895631       --> ..................................................
EV574659       --> GTCTGCTTGGGAAGAAGAGTAGAGGAGACGAGTAACGGTTTCGTACGGCA
EV546700       --> GTCTGCTTGGGAAGAAGAGTAGAGGAGACGAGTAACGGTTTCGTACGGCA
EX767838       --> ..................................................
FD544460       --> GTCT..............................................
FD958564       --> ..................................................

               801    -    851
UN17926        --> AGCGGCGGCGGTTGGCACCG---C---CACGCCCAATGCTCCGGTGACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912904       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551635       <-- AGCGGCGGCCGTTGGCACCG---Cta........................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV529057       <-- AGCGGCGGCGGTTGGCACCG---C---CACACCCAACGCTCCGGTGACGC  Raphanus raphanistrum subsp. maritimus
EV570347       <-- AGCGGCGGCCGTTGGCACCG---CTACCACGCCAAATGCTCCGGTGACGC  Raphanus raphanistrum subsp. landra
EV538571       <-- AGCGGCGGCGGTTGGCACCG---C---CACGCCCAATGCTCCGGTGACGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV534907       <-- AGCGGCGGCGGTTGGCACCG---C---CACGCCCAATGCTCCGGTGACGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755902       <-- AGCGGCGGCGGTTGGCACCG---C---CACGCCCAATGCTCCGGTGACGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548307       <-- AGCGGCGGCGGTTGGCACCGTTAC---CACGCCCAATGCTCCGGTGACGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916615       <-- AGCGGCGGCCGTTGGCACCG---CTACCACGCCAAATGCTCCGGTGACGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981939       <-- AGCGGCGGCGGTTGGCGCCGTTAC---CACGCCCAATGCTCCGGTGACGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD973636       <-- AGCGGCGGCGGTTGGCACCG---C---CACGCCCAATGCTCCGGTGACGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972867       <-- AGCGGCGGCGGTTGGCACCG---C---CACGCCCAATGCTCCGGTGACGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971763       <-- AGCGGCGGCGGTTGGCACCG---C---CACGCCCAATGCTCCGGTGACGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901589       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909232       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984562       --> ..................................................  Raphanus raphanistrum subsp. landra
FD982786       --> ..................................................  Raphanus raphanistrum subsp. landra
FD968670       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544004       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909540       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY912267       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977609       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969286       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531575       --> AGCGGCGGCGGTTGGCACCG---C---CACACCCAACGCTCCGGTGACGA  Raphanus raphanistrum subsp. maritimus
EV532891       --> AGCGGCGGCGGTTGGCACCG---C---CACACCCAACGCTCCGGTGACGC  Raphanus raphanistrum subsp. maritimus
EX753327       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY895631       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV574659       --> AGCGGCGGCCGTTGGCACCG---CTACCACGCCAAATGCTCCGGTGACGC  Raphanus raphanistrum subsp. landra
EV546700       --> AGCGGCGGCCGTTGGCACCG---CTACCACGCCAAATGCTCCGGTGACGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX767838       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544460       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958564       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               851    -    901
UN17926        --> TCCACATTTTCTGAACT---TAGT-GTGT-TTTGATCTAGGAGTGAGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912904       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551635       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV529057       <-- TCCACATTTTCTGAACT---GAGT-GTGT-TTTGATCcc...........  Raphanus raphanistrum subsp. maritimus
EV570347       <-- TCCACATTTTCTGAACTGAGTAGT-GTGT-TTTGATCGAGGccc......  Raphanus raphanistrum subsp. landra
EV538571       <-- TCCACATTTTCTGAACT---TAGT-GTGT-TTTGATCTcc..........  Raphanus raphanistrum subsp. raphanistrum (MS)
EV534907       <-- TCCACATTTTCTGAACT---TAGT-GTCT-TTTGATCTAGc.........  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755902       <-- TCCACATTTTCTGAACT---TAGT-GTGT-TTTGATCTccc.........  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548307       <-- TCCACATTTTCTGAACTGAGTAGT-GTGT-TTTGATCGAGGccc......  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916615       <-- TCCACATTTTCTGAACTGAGTAGT-GTGT-TTTGATCGAGGccc......  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981939       <-- TCCACATTTTCTGAACTGAGTAGT-GTGT-TTTGATCGAGGccc......  Raphanus raphanistrum subsp. raphanistrum (NY)
FD973636       <-- TCCACATTTTCTGAACT---TAGT-GTGT-TTTGATCTAGGAGTGAGACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972867       <-- TCCACATTTTCTGAACT---TAGT-GTGT-TTTGATCTAGGAGTGAGACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971763       <-- TCCACATTTTCTGAACT---TAGT-GTGT-TTTGATCTAGGAGTGAGACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901589       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909232       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984562       --> ..................................................  Raphanus raphanistrum subsp. landra
FD982786       --> ..................................................  Raphanus raphanistrum subsp. landra
FD968670       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544004       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909540       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY912267       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977609       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969286       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531575       --> TCCACATT..........................................  Raphanus raphanistrum subsp. maritimus
EV532891       --> TCCACATTTTCTGAACT---GAGT-GTGT-TTTGATCcc...........  Raphanus raphanistrum subsp. maritimus
EX753327       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY895631       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV574659       --> TCCACATTTTCTGAACTGAGTAGT-GTGT-TTTGAT..............  Raphanus raphanistrum subsp. landra
EV546700       --> TCCACATTTTCTGAACT---GAGTAGTGTGTTTGAT..............  Raphanus raphanistrum subsp. raphanistrum (NY)
EX767838       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544460       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958564       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               901    -    951
UN17926        --> AAAGCAGCTTGTATGCAACAAATAGACTCGGAGGAATCTGAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY905067       <-- ..............................................
EY912904       <-- ..............................................
EV551635       <-- ..............................................
EV529057       <-- ..............................................
EV570347       <-- ..............................................
EV538571       <-- ..............................................
EV534907       <-- ..............................................
EX755902       <-- ..............................................
EV548307       <-- ..............................................
EY916615       <-- ..............................................
FD981939       <-- ..............................................
FD973636       <-- AAAGCAGCTTGTATGCAACcc.........................
FD972867       <-- AAAGCAGCTTGTATGCAACAAATAGACTCcc...............
FD971763       <-- AAAGCAGCTTGTATGCAACAAATAGACTCGGAGGAATCTGAAAAAA
EY901589       --> ..............................................
EY909232       --> ..............................................
FD984562       --> ..............................................
FD982786       --> ..............................................
FD968670       --> ..............................................
EV544004       --> ..............................................
EY909540       --> ..............................................
EY912267       --> ..............................................
FD977609       --> ..............................................
FD969286       --> ..............................................
EV531575       --> ..............................................
EV532891       --> ..............................................
EX753327       --> ..............................................
EY895631       --> ..............................................
EV574659       --> ..............................................
EV546700       --> ..............................................
EX767838       --> ..............................................
FD544460       --> ..............................................
FD958564       --> ..............................................