1      -     51
UN18013        --> GGCAATATAGCAACCATCAAATTATCCAAACATCTGATTTCATCATAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV525277       <-- GGCAATATAGCAACCATCAAATTATCCAAACATCTGATTTCATCATAATA
EX764326       <-- .......ttGCAACCATCAAATTATCCAAA-ATCTGATTTCATCATAATA
FD556352       <-- ..............CATCAAATTATCCAAACATCTGATTTCATCATAATA
EV549492       <-- .......................gTCCAAACATCTGATTTCATCATAATA
EW726599       <-- ..................................................
FD970826       <-- ..................................................
FY428742       <-- ..................................................
EV530069       --> GGCAATATAGCAACCATCAAATTATCCAAACATCTGATTTCATCATAATA
EV544954       --> ...........................AAACATCTGATTTCATCATAATA
EV544936       --> ...................................GATTTCATCATAATA
FD944762       --> ..................................................
FD967093       --> ..................................................

               51     -    101
UN18013        --> AACACAGCAAATGATAGAAACTTATGAACTGTTGATAAAATATAATATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV525277       <-- AACCCAGCAAATGATAGAAACTTATGAACTGTTGATAAAATATAATATTT
EX764326       <-- AACACAGCAAATGATAGAAACTTATGAACTGTTGATAAAACATCATATTT
FD556352       <-- AACACAGCAAATGATAGAAACTTATGAACTGTTGATAAAATATAATATTT
EV549492       <-- AACACAGCAAATGATAGAAACTTATGAACTGTTGATAAAACATCATATTT
EW726599       <-- ..............TAGAAACTTATGAACTGTTGATAAAATATAATATTT
FD970826       <-- ...............AGAAACTTATGAACTGTTGATAAAATATAATATTT
FY428742       <-- ..................................................
EV530069       --> AACCCAGCAAATGATAGAAACTTATGAACTGTTGATAAAATATAATATTT
EV544954       --> AACACAGCAAATGATAGAAACTTATGAACTGTTGATAAAACATCATATTT
EV544936       --> AACACAGCAAATGGTAGAAACTTATTAACTGTTGATAAAATATAATATTT
FD944762       --> ............ggTAGAAACTTATGAACTGTTGATAAAATATAATATTT
FD967093       --> ...............AGAAACTTATGAACTGTTGATAAAATATAATATTT

               101    -    151
UN18013        --> TTAAAAGACAACGAAATGAGACCAAAGATTCATATATAGTTTCTTT-CTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV525277       <-- TTAAAAGACAACGAAATGAGACCAAAGATTCATATATAGTTTCTTT-CTC
EX764326       <-- TTAAAAGACAACGAAATGAGACCAAAGATTCATATATAGTTTCTTT-CTC
FD556352       <-- TTAAAAGACAACGAAATGAGACCAAAGATTCATATATAGTTTCTTT-CTC
EV549492       <-- TTAAAAGACAACGAAATGAGACCAAAGATTCATATATAGTTTCTTT-CTC
EW726599       <-- TTAAAAGACAACGAAATGAGACCAAAGATTCATATATAGTTTCTTT-CTC
FD970826       <-- T-AAAAGACAACCAAATGAGACCAAAGATTCATATATAGTTTCTTT-CTC
FY428742       <-- ..................................................
EV530069       --> TTAAAAGACAACGAAATGAGACCAAAGATTCATATATAGTTTCTTTTCCC
EV544954       --> TTAAAAGACAACGAAATGAGACCAAAGATTCATATATAGTTTCTTT-CTC
EV544936       --> TTAAAAGACAACGAAATGAAACCAAAGATTCATATATAGTTTCTTT-CTC
FD944762       --> TTAAAAGACAACGAAATGAGACCAAAGATTCATATATAGTTTCTTT-CTC
FD967093       --> T-AAAAGACAACCAAATGAGACCAAAGATTCATATATAGTTTCTTT-CTC

               151    -    201
UN18013        --> TTTACTCGTCAGCCTTCTCGGCGGCGACTTCACCAGCAGCCACAACTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV525277       <-- TTTACTCGTCAGCCTTCTCGGCGGCGACTTCACCAGCAGCCACAACTTCC
EX764326       <-- TTTACTCGTCAGCCTTCTCGACGGCGACTTCACCAGCAGCCAAAACTTCC
FD556352       <-- TTTACTCGTCAGCCTTCTCGGCGGCGACTTCACCAGCAGCCACAACTTCC
EV549492       <-- TTTACTCGTCAGCCTTCTCGGCGGCGACTTCACCAGCAGCCAAAACTTCC
EW726599       <-- TTTACTCGTCAGCCTTCTCGGCGGCGACTTCACCAGCAGCCACAACTTCC
FD970826       <-- TTTACTCGTCAGCCTTCTCGGCGGCGACTTCACCAGCAGCCACAACTTCC
FY428742       <-- ..................................................
EV530069       --> TTTACTCGTCAGCCTTCTCGGCGGCGACTTCACCAGCAGCCACAACTTCC
EV544954       --> TTTACTCGTCAGCCTTCTCGGCGGCGACTTCACCAGCAGCCAAAACTTCC
EV544936       --> TTTACTCGTCAGCCTTCTCGGCGG..........................
FD944762       --> TTTACTCGTCAGCCTTCTCGGCGGCGACTTCACCAGCAGCCACAACTTCC
FD967093       --> TTTACTCGTCAGCCTTCTCGGCGGCGACTTCACCAGCAGCCACAACTTCC

               201    -    251
UN18013        --> TCTGCCTCAGCCTTCTTCTCCTCCTCCACAACCGCCGGAGTTTCAGTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV525277       <-- TCTGCCTCAGCCTTCTTCTCCTCCTCCACAACCGCCGGAGTTTCAGTCAC
EX764326       <-- TCTGCCTCAGCCTTCTTCTCCTCCTCCACAACCGTGGGAGTTTCAGTCAC
FD556352       <-- TCTGCCTCAGCCTTCTTCTCCTCCTCCACAACCGCCGGAGTTTCAGTCAC
EV549492       <-- TCTGCCTCAGCCTTCTTCTCCTCCTCCACAACCGCGGGAGTTTCAGTCAC
EW726599       <-- TCTGCCTCAGCCTTCTTCTCCTCCTCCACAACCGCCGGAGTTTCAGTCAC
FD970826       <-- TCTACCTCAGCCTTCTTCTCCTCCTCCACAACCGCCGGAGCTTCAGTCAC
FY428742       <-- ..........................................TCAGTCAC
EV530069       --> TCTGCCTCAGCCTTCTTCTCCTCCTCCACAACCGCCGGAGTTTCAGTCAC
EV544954       --> TCTGCCTCAGCCTTCTTCTCCTCCTCCACAACCGCGGGAGTTTCAGTCAC
EV544936       --> ..................................................
FD944762       --> TCTGCCTCAGCCTTCTTCTCCTCCTCCACAACCGCCGGAGTTTCAGTCAC
FD967093       --> TCTACCTCAGCCTTCTTCTCCTCCTCCACAACCGCCGGAGCTTCAGTCAC

               251    -    301
UN18013        --> CTCGTCCTTCTCTTCTGTCTTTGCCTCCTCCTCAACCACCGGAGTTTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV525277       <-- CTCGTCCTTCTCTTCTGTCTTTGCCTCCTCCTCAACCACCGGAGTTTCTG  Raphanus raphanistrum subsp. maritimus
EX764326       <-- CTCGTCCTTCTCTTCTGTCTTTGCCTCCTCCTCAACGACCGGAGTTTCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556352       <-- CTCGTCCTTCTCTTCTGTCTTTGCCTCCTCCTCAACCACCGGAGTTTCTG  Raphanus raphanistrum subsp. landra
EV549492       <-- CTCGTCCTTCTCTTCTGTCTTTGCCTCCTCCTCAACGACCGGAGTTTCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW726599       <-- CTCGTCCTTCTCTTCTGTCTTTGCCTCCTCCTCAACCACCGGAGTTTCTG  Raphanus sativus cv Early Scarlet Globe
FD970826       <-- CTCGTCCTTCTCTTCTGTCTTTGCCTCCTTCTCAACGACCGGAGTTTCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY428742       <-- CTCGTCCTTCTCTTCTGTCTTTGCCTCCTCCTCAACCACCGGAGTTTCTG  Raphanus sativus cv GSK3-1
EV530069       --> CTCGTCCTTCTCTTCTGTCTTTGCCTCCTCCTCAACCACCGGAGTTTCTG  Raphanus raphanistrum subsp. maritimus
EV544954       --> CTCGTCCTTCTCTTCTGTCTTTGCCTCCTCCTCAACGACCGGAGTTTCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544936       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944762       --> CTCGTCCTTCTCTTCTGTCTTTGACTCCTCCTCAACCACCAGAGTTTCTG  Raphanus sativus cv Early Scarlet Globe
FD967093       --> CTCGTCCTTCTCTTCTGTCTTTGCCTCCTTCTCAACGACCGGAGTTTCTG  Raphanus raphanistrum subsp. raphanistrum (MS)

               301    -    351
UN18013        --> TCTTCTCTTCTTCCTCCTCTACCTTTGGCTCCTCTGGTTTCTTCTCATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV525277       <-- TCTTCTCTTCTTCCTCCTCTACCTTTGGCTCCTCTGGTTTCTTCTCATTT
EX764326       <-- TCTTCTCTTCTTCCTCCTCTACCTTTGGCTCCTCTGGTTTCTTCTCAGTT
FD556352       <-- TCTTCTCTTCTTCCTCCTCTACCTTTGGCTCCTCTGGTTTCTTCTCATTT
EV549492       <-- TCTTCTCTTCTTCCTCCTCTACCTTTGGCTCCTCTGGTTTCTTCTCAGTT
EW726599       <-- TCTTCTCTTCTTCCTCCTCTACCTTTGGTTCCTCTGGTTTCTTCTCATTT
FD970826       <-- TCTTCTCTTCTTCCTCCTCTACCTTTGGCTCCTCTGGTTTCTTCTCATTT
FY428742       <-- TCTTCTCTTCTTCCTCCTCTACCTTTGGCTCCTCTGGTTTCTTCTCATTT
EV530069       --> TCTTCTCTTCTTCCTCCTCTACCTTTGGCTCCTCTGGTTTCTTCTCATTT
EV544954       --> TCTTCTCTTCTTCCTCCTCTACCTTTGGCTCCTCTGGTTTCTTCTCAGTT
EV544936       --> ..................................................
FD944762       --> TCTTCTCTTCTTCCTCCTCTACCTTTGGCTCCTCTGGTTTCTTCTCATTT
FD967093       --> TCTTCTCTTCTTCCTCCTCTACCTTTGGCTCCTCTGGTTTCTTCTCATTT

               351    -    401
UN18013        --> TCTTCATCTTTTTTCTCTGCCTCTTCCACAACCACTTCTTTTCTCGTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV525277       <-- TCTTTATCTTTTTTCTCTGCCTCTTCCACAACCACTTCTTTTCTCGTTTC  Raphanus raphanistrum subsp. maritimus
EX764326       <-- TCTTCATCTTTTTTCTCTGCCTCTTCCACAACCACTTCTTTTCTCGTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556352       <-- TCTTCATCTTTTTTCTCTGCCTCTTCCACAACCACTTCTTTTCTCGTTTC  Raphanus raphanistrum subsp. landra
EV549492       <-- TCTTCATCTTTTTTCTCTGCCTCTTCCACAACCACTTCTTTTCTCGTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW726599       <-- TCTTTATCTTTTTTCTCTGCCTCTTCCACAACCACTTCTTTTCTCGTTTC  Raphanus sativus cv Early Scarlet Globe
FD970826       <-- TCTTCATCTTTTTTCTCTGCCTCTTCCACAACCACTTCTTTGCTTGTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FY428742       <-- TCTTCATCTTTTTTCTCTGCCTCTTCCACAACCACTTCTTTTCTCGTTTC  Raphanus sativus cv GSK3-1
EV530069       --> TCTTTATCTTTTTTCTCTGCCTCTTCCACAACCACTTCTTTTCTCGTTTC  Raphanus raphanistrum subsp. maritimus
EV544954       --> TCTTCATCTTTTTTCTCTGCCTCTTCCACAACCACTTCTTTTCTCGTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544936       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944762       --> TCTTTATCTTTTTTCTCTGCCTCTTCCACAACCACTTCTTTTCTCGTTTC  Raphanus sativus cv Early Scarlet Globe
FD967093       --> TCTTCATCTTTTTTCTCTGCCTCTTCCACAACCACTTCTTTGCTTGTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)

               401    -    451
UN18013        --> TTCGACTGATGCTTGGGATTCTTGTTCAGTTACGGCGGCTGGAGCAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV525277       <-- TTCGACTGATGCTTGGGATTCTTGTTCAGTTACGGCGGCTGGAGCAGGAG  Raphanus raphanistrum subsp. maritimus
EX764326       <-- TTCGACTGATGCTTCGGATTCTTGTTCAGTTACGGCGGCTGGAGCAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556352       <-- TTCGACTGATGCTTGGGATTCTTGTTAAGTTACGGCGGCTGGAGCAGGAG  Raphanus raphanistrum subsp. landra
EV549492       <-- TTCGACTGATGCTTCGGATTCTTGTTCAGTTACGGCGGCTGGAGCAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW726599       <-- TTCGACTGATGCTTGGGATTCTTGTTCAGTTACGGCGGCTGGAGCAGGAG  Raphanus sativus cv Early Scarlet Globe
FD970826       <-- TTCGACTGATGCTTCGGATTCTTGTTCAGTAACGGCGGCTGGAGCAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY428742       <-- TTCGACTGATGCTTGGGATTCTTGTTCAGTTACGGCGGCTGGAGCAGGAG  Raphanus sativus cv GSK3-1
EV530069       --> TTCGACTGATGCTTGGGATTCTTGTTCAGTTACGGCGGCT..........  Raphanus raphanistrum subsp. maritimus
EV544954       --> TTCGACTGATGCTTCGGATTCTTGTTCAGTTACGGCGGCTGGAGCAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544936       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944762       --> TTCGACTGATGCTTGGGATTCTTGTTCAGTTACGGCGGCTGGAGC.....  Raphanus sativus cv Early Scarlet Globe
FD967093       --> TTCGACTGATGCTTCGGATTCTTGTTCAGTAACGGCGGCTGGAGCAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)

               451    -    501
UN18013        --> CAGACTCCGTGGTGGCCACGACTTCTTCCGCCTGTTCGGTAACCACAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV525277       <-- CAGAGTCCGTGGTGGCCACGACTTCTTCCGCCTGTTCGGTAACCACAACT
EX764326       <-- CAGACTCCGTGGTGGCCACGACTTCTTCCGCTTGTTCGGTAACCACAACT
FD556352       <-- CAGAGTCCGTGGTGGCCACGACT---TCCGCCTGTTCGATAACCACAACT
EV549492       <-- CAGACTCCGTGGTGGCCACGACTTCTTCCGCTTGTTCGGTAACCACAACT
EW726599       <-- CAGAGTCCGTGGTGGCCACGACTTCTTCCGCCTGTTCGGTAACCACAACT
FD970826       <-- CAGACTCCGTGGTGGCCACGACTTCTTCCGCCTGTTCGGTAACCACAACT
FY428742       <-- CAGAGTCCGTGGTGGCCACGACTTCTTCCGCCTGTTCGATAACCACAACT
EV530069       --> ..................................................
EV544954       --> CAGACTCCGTGGTGGCCACGACTTCTTCCGCTTGTTCGGTAACCACAACT
EV544936       --> ..................................................
FD944762       --> ..................................................
FD967093       --> CAGACTCCGTGGTGGCCACGACTTCTTCCGCCTGTTCGGTAACCACAACT

               501    -    551
UN18013        --> GGCTCCTCCACTGTCTTGGTTGGTACCTCAACGTTCTCTACTGCTGGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV525277       <-- GGCTCCTCCGCTGTCTTGGTTGGTACCTCAACGTTCTCGACTGCTGGAGT
EX764326       <-- GGCTCCTCCACTGTCTTGGTTGGTACCTCAACGTTCTCTACTGCTGGAGT
FD556352       <-- GGCTCCTCCGCTGTCTTGGTTGGTACCTCAACGTTCTCGACTGCTGGAGT
EV549492       <-- GGCTCCTCCACCGTCTTGGTTGGTACCTCAACGTTCTCTACTGCTGGAGT
EW726599       <-- GGCTCCTCCGCTGTCTTGGTTGGTACCTCAACGTTCTCGACTGCTGGAGT
FD970826       <-- GGCTCCTCCACTGTCTTGGTTGGTACCTCAACGTTCTCTACTGCTGGAGT
FY428742       <-- GGCTCCTCCGCTGTCTTGGTTGGTACCTCAACGTTCTCGACTGCTGGAGT
EV530069       --> ..................................................
EV544954       --> GGCTCCTCCACCGTCTTGGTTGGTACCTCAACGTTCTCTACTGCTGGAGT
EV544936       --> ..................................................
FD944762       --> ..................................................
FD967093       --> GGCTCCTCCACTGTCTTGGTTGGTACCTCAACGTTCTCTACTGCTGGAGT

               551    -    601
UN18013        --> AATGACTTGTTCAACCTTAACGTCGGCCATTTCTAAATGACAAAGGTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV525277       <-- AATGACTTGTTCAACCTTAACGTCGGCCATTTCTAAATGACAAAGGTAAA
EX764326       <-- AATGACTTGTTCAACCTTAACGTCGGCCATTTCTAAATGACAAAGGTAAA
FD556352       <-- AATGACTTGTTCAACCTTAACGTCGGCCATTTCTAAATGACAAAGGTAAA
EV549492       <-- AATGACTTGTTCAACCTTAACGTCGGCCATTTCTAAATGACAAAGGTAAA
EW726599       <-- AATGACTTGTTCAACCTTAACGTCGGCCATTTCTAAATGACAAAGGTAAA
FD970826       <-- AATGACTTGATCAACCTTAACGTCGGCCATTTCTAAATGACAAAGGTAAA
FY428742       <-- AATGACTTGTTCAACCTTAACGTCGGCCATTTCTAAATGACAAAGGTAAA
EV530069       --> ..................................................
EV544954       --> AATGACTTGTTCAACCTTAACGTCGGCCATTTCTAAATGACAAAGGTAAA
EV544936       --> ..................................................
FD944762       --> ..................................................
FD967093       --> AATGACTTGATCAACCTTAACGTCGGCCATTTCTAAATGACAAAGGTAAA

               601    -    651
UN18013        --> GAGGAAAAATATAAAGAAAATGAGAAGAGAAGTAAGAGTGTATGTGATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV525277       <-- GAGGAAAACTATAAAGAAAATGAGAAGAGAAGTAAGAGTGTATGTGATGC  Raphanus raphanistrum subsp. maritimus
EX764326       <-- GAGGAAAAATATAA-GAAAATGAGAAGAGAAGTAAGAGTGTATGTGATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556352       <-- GAGGAAAAATATAAAGAAAATGAGAAGAGAAGTAAGAGTGTATGTGATGC  Raphanus raphanistrum subsp. landra
EV549492       <-- GAGGAAAAATATAAAGAAAATGAGAAGAGAAGTAAGAGTGTATGTGATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW726599       <-- GAGGAAAACTATAAAGAAAATGAGAAGAGAAGTAAGAGTGTATGTGATGC  Raphanus sativus cv Early Scarlet Globe
FD970826       <-- GAGGAAAAATATAAAGAAAATGAGAAGAGAAGTAAGAGTGTATGTGATGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FY428742       <-- GAGGAAAACTATAAAGAAAATGAGAAGAGcctcgtgccg...........  Raphanus sativus cv GSK3-1
EV530069       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV544954       --> GAGGAAAAATATAAAGAAAATGAGAAGAGAAGTAAGAGTGTATGTGATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544936       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944762       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD967093       --> GAGGAAAAATATAAAGAAAATGAGAAGAGAAGTAAGAGTGTATGTGATGC  Raphanus raphanistrum subsp. raphanistrum (MS)

               651    -    701
UN18013        --> TTTGGTGACC
                   ~~~~~~~~~~
EV525277       <-- TTTGGTcc..
EX764326       <-- TTTGGTGACC
FD556352       <-- TTTGGTcc..
EV549492       <-- TTTGGTGcc.
EW726599       <-- TTTGGTcc..
FD970826       <-- TTTGGTcc..
FY428742       <-- ..........
EV530069       --> ..........
EV544954       --> TTTGGTGcc.
EV544936       --> ..........
FD944762       --> ..........
FD967093       --> TTTGGTcc..