RadishBase

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Alignment for radish unigene UN18134

               1      -     51
UN18134        --> GGAGGAAGTAGGAGAAGTCTATCTTCTCTCCGTCGTTCCCAACACCAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- ..................................................
FY441317       <-- ..................................................
EV540969       <-- ..................................................
EY910274       <-- ..................................................
FY440143       <-- ..................................................
FD544895       <-- ..................................................
FY445423       <-- ..................................................
FD973750       --> GGAGGAAGTAGGAGAAGTCTATCTTCTCTCCGTCGTTCCCAACACCAATC
FD974060       --> GGAGGAAGTAGGAGAAGTCTATCTTCTCTCCGTCGTTCCCAACACCAATC
EX754353       --> ................................................gg
EV537361       --> ..................................................
EV536545       --> ..................................................
FD552021       --> ..................................................
EY914179       --> ..................................................
FD548750       --> ..................................................

               51     -    101
UN18134        --> GCATAATCAATCAATT-GAACTTCAACAGAGAGAGAGAGAGAGAGAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- ..................................................
FY441317       <-- ..................................................
EV540969       <-- ..................................................
EY910274       <-- ..................................................
FY440143       <-- ..................................................
FD544895       <-- ..................................................
FY445423       <-- ..................................................
FD973750       --> GCATAATCAATCAATT-GAACTTCAACAGAGAGAGAGAGAGAGAGAGAGA
FD974060       --> GCATAATCAATCAATT-GAACTTCAACAGAGAGAGAGAGAGAGAGAGAGA
EX754353       --> GCATAATCAATCAATTCGAACTTCAACAGAGAGAGAGAGAGAGAGAGAGA
EV537361       --> ...........................acttcaacAGAGAGAGAGAGAGA
EV536545       --> .............................acttcaacAGAGAGAGAGAGA
FD552021       --> ...........gggcataatcaatcaattgaacttcaacAGAGAGAGAGA
EY914179       --> .................................acttcaacAGAGAGAGA
FD548750       --> ...................................acttcaacAGAGAGA

               101    -    151
UN18134        --> GAGAGAGAGCGAAACCCTAATTTCTCTGATCGTAAAAAA-GAGAGAAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- ..................................................
FY441317       <-- ..................................................
EV540969       <-- ..................................................
EY910274       <-- ..................................................
FY440143       <-- ..................................................
FD544895       <-- ..................................................
FY445423       <-- ..................................................
FD973750       --> GAGAGAG--CGAAACCCTAATTTCTCTGATCGTAAAAAA-GAGAGAAAAC
FD974060       --> GAGAGAGAGCGAAACCCTAATTTCTCTGATCGTAAAAAA-GAGAGAAAAC
EX754353       --> GAGAGAGAGCGAAACCCTAATTTCTCCGATCGTAAAAAA-GAGAGAAAAC
EV537361       --> GAGAGAGAGCGAAACCCTAATTTCTCTGATCGTAAAAAAAGAGAGAAAAC
EV536545       --> GAGAGAGAGCGAAACCCTAATTTCTCTGATCGTAAAAAAAGAGAGAAAAC
FD552021       --> GAGAGAGAGCGAAACCCTAATTTCTCTGATCGTAAAAAA-GAGAGAAAAC
EY914179       --> GAGAGAGAGCGAAACCCTAATTTCTCTGATCGTAAAAAA-GAGAGAAAAC
FD548750       --> GAGAGAGAGCGAAACCCTAATTTCTCTGATCGTAAAAAA-GAGAGAAAAT

               151    -    201
UN18134        --> TAACTTTACTCAATTCCCTTTTTTTTGCGATTAGCTAACATGGCGTTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- ..........................GCGATTAGCTAACATGGCGTTCGG
FY441317       <-- ..................................................
EV540969       <-- ..................................................
EY910274       <-- ..................................................
FY440143       <-- ..................................................
FD544895       <-- ..................................................
FY445423       <-- ..................................................
FD973750       --> TAACTTTACTCAATTCCCTTTTTTTTGCGATTAGCTAACATGGCGTTCGG
FD974060       --> TAACTTTACTCAATTCCCTTTTTTTTGCGATTAGCTAACATGGCGTTCGG
EX754353       --> TAACTTTACTCAATTCCCTTTTTTTTGCGATTAGCTAACATGGCGTTCGG
EV537361       --> TAACTT-ACTCAATTCCTTTTTTTTTGCGATTAGCTAACATGGCGTTCGG
EV536545       --> TAACTTTACTCAATTCCTTTTTTTTTGCGATTAGCTAACATGGCGTTCGG
FD552021       --> TAACTTTACTCAATTCCCTTTTTTT-GCGATTAGCTAACATGGCGTTCGG
EY914179       --> TAACTTTACTCAATTCCCTTTTTTT-GCGATTAGCTAACATGGCGTTCGG
FD548750       --> TAACTTTACTCAATTCCCTTTTTTTTGCGATTAGCTAACATGGCGTTCGG

               201    -    251
UN18134        --> AAACTGTCGGTGGGAGCTCCTCGCGGCTTCTCTAGCCCTGACTTTAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- AAACTGTCGGTGGGAGCTCCTCGCGGCTTCTCTAGCCCTGACTTTAGCTC
FY441317       <-- ..................................................
EV540969       <-- ..................................................
EY910274       <-- ..................................................
FY440143       <-- ..................................................
FD544895       <-- ..................................................
FY445423       <-- ..................................................
FD973750       --> AAACTGTCGGTGGGAGCTCCTCGCGGCTTCTCTAGCCCTGACTTTAGCTC
FD974060       --> AAACTGTCGGTGGGAGCTCCTCGCGGCTTCTCTAGCCCTGACTTTAGCTC
EX754353       --> AAACTGTCGGTGGGAGCTCCTCGCGGCTTCTCTAGCCCTGACTTTAGCTC
EV537361       --> AAACTGTCGGTGGGAGCTCCTCGCGGCTTCTCTAGCCCTGACTTTAGCTC
EV536545       --> AAACTGTCGGTGGGAGCTCCTCGCGGCTTCTCTAGCCCTGACTTTAGCTC
FD552021       --> AAACTGTCGGTGGGAGCTCCTCGCGGCTTCTCTAGCCCTGACTTTAGCTC
EY914179       --> AAACTGTCGGTGGGAGCTCCTCGCGGCTTCTCTAGCCCTGACTTTAGCTC
FD548750       --> AAACTGTCGGTGGGAGCTCCTCGCGGCTTCTCTAGCCCTGACTTTAGCTC

               251    -    301
UN18134        --> TGATTCACCACCTGGTGGATGCGAACTCGGAAGGAGATGCTCTTTACGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- TGATTCACCACCTGGTGGATGCGAACTCGGAAGGAGATGCTCTTTACGCG
FY441317       <-- ..................ATGCGAACTCGGAAGGAGATGCCCTTTACGCT
EV540969       <-- ...................................GATGCTCTTTACGCG
EY910274       <-- ..................................................
FY440143       <-- ..................................................
FD544895       <-- ..................................................
FY445423       <-- ..................................................
FD973750       --> TGATTCACCACCCGGTGGATGCGAACTCGGAAGGAGATGCTCTTTACGCT
FD974060       --> TGATTCACCACCCGGTGGATGCGAACTCGGAAGGAGATGCTCTTTACGCT
EX754353       --> TGATTCACCACCCGGTGGATGCGAACTCGGAAGGAGATGCTCTTTACGCT
EV537361       --> TGATTCACCACCTGGTGGATGCGAACTCGGAAGGAGATGCTCTTTACGCG
EV536545       --> TGATTCACCACCTGGTGGATGCGAACTCGGAAGGAGATGCTCTTTACGCG
FD552021       --> TGATTCACCACCTGGTGGATGCGAACTCGGAAGGAGATGCTCTTTACGCG
EY914179       --> TGATTCACCACCTGGTGGATGCGAACTCGGAAGGAGATGCTCTTTACGCG
FD548750       --> TGATTCACCACCTGGTGGATGCGAACTCGGAAGGAGATGCTCTTTACGCG

               301    -    351
UN18134        --> CTTCGCAGGAGCTTATCGGATCCAGACCACGTGCTCCAGAGCTGGGATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- CTTCGCAGGAGCTTATCGGATCCAGACCACGTGCTCCAGAGCTGGGATCC
FY441317       <-- CTTCGCAGGAGCTTATCGGATCCAGACCATGTGCTCCAGAGCTGGGATCC
EV540969       <-- CTTCGCAGGAGCTTATCGGATCCAGACCACGTGCTCCAGAGCTGGGATCC
EY910274       <-- ..................................................
FY440143       <-- ..................................................
FD544895       <-- ..................................................
FY445423       <-- ..................................................
FD973750       --> CTTCGCCGGAGCTTATCGGATCCAGACCACGCGCTCCAGAGCTGGGATCC
FD974060       --> CTTCGCCGGAGCTTATCGGATCCAGACCACGTGCTCCAGAGCTGGGATCC
EX754353       --> CTTCGCCGGAGCTTATCGGATCCAGACCACGTGCTCCAGAGCTGGGATCC
EV537361       --> CTTCGCAGGAGCTTATCGGATCCAGACCACGTGCTCCAGAGCTGGGATCC
EV536545       --> CTTCGCAGGAGCTTATCGGATCCAGACCACGTGCTCCAGAGCTGGGATCC
FD552021       --> CTTCGCAGGAGCTTATCGGATCCAGACCACGTGCTCCAGAGCTGGGATCC
EY914179       --> CTTCGCAGGAGCTTATCGGATCCAGACCACGTGCTCCAGAGCTGGGATCC
FD548750       --> CTTCGCAGGAGCTTATCGGATCCAGACCACGTGCTCCAGAGCTGGGATCC

               351    -    401
UN18134        --> AACTCTTGTTAACCCTTGTACCTGGTTCCATGTCACCTGTAACCAAGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- AACTCTTGTTAACCCTTGTACCTGGTTCCATGTCACCTGTAACCAAGACA
FY441317       <-- AACTCTTGTTAACCCTTGTACCTGGTTCCATGTCACCTGTAACCAAGACA
EV540969       <-- AACTCTTGTTAACCCTTGTACCTGGTTCCATGTCACCTGTAACCAAGACA
EY910274       <-- ..................TACCTGGTTCCATGTCACCTGTAACCAAGACA
FY440143       <-- ..................................................
FD544895       <-- ..................................................
FY445423       <-- ..................................................
FD973750       --> GACTCTTGTTAACCCTTGTACCTGGTTCCATGTCACCTGTAACCAAGACA
FD974060       --> GACTCTTGTTAACCCTTGTACCTGGATCCATGTCACCTGTAACCAAGACA
EX754353       --> GACTCTTGTTAACCCTTGTACCTGGTTCCATGTCACCTGTAACCAAGACA
EV537361       --> AACTCTTGTTAACCCTTGTACCTGGTTCCATGTCACCCGTAACCAAGACA
EV536545       --> AACTCTTGTTAACCCTTGTACCTGGTTCCATGTCACCTGTAACCAAGACA
FD552021       --> AACTCTTGTTAACCCTTGTACCTGGTTCCATGTCACCTGTAACCAAGACA
EY914179       --> AACTCTTGTTAACCCTTGTACCTGGTTCCATGTCACCTGTAACCAAGACA
FD548750       --> AACTCTTGTTAACCCTTGTACCTGGTTCCATGTCACCTGTAACCAAGACA

               401    -    451
UN18134        --> GCCGCGTCACTCGTGTGGATTTGGGTAATTCAAACCTTTCAGGACATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- GCCGCGTCACTCGTGTGGACTTGGGTAATTCAAACCTTTCAGGACATCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY441317       <-- GCCGCGTCACTCGTGTGGATTTGGGTAATTCAAACCTTTCAGGACATCTT  Raphanus sativus cv GSK3-1
EV540969       <-- GCCGCGTCACCCGTGTGGATTTGGGTAATTCAAACCTTTCAGGACATCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910274       <-- GCCGCGTCACTCGTGTGGACTTGGGTAATTCAAACCTTTCAGGACATCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY440143       <-- ...................................CTTTCAGGACATCTT  Raphanus sativus cv GSK3-1
FD544895       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445423       <-- ..................................................  Raphanus sativus cv GSK3-1
FD973750       --> GCCGCGTCACTCGTGTGGATTTGGGTAATTCAAACCTTTCAGGACATCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974060       --> GCCGCGTCACTCGTGTGGATTTGGGTAATTCAAACCTTTCAGGACATCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754353       --> GCCGCGTCACTCGTGTGGATTTGGGTAATTCAAACCTTTCAGGACATCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537361       --> GCCGCGTCACTCGTGTGGATTTGGGTAATTCAAACCTTTCAGGACATCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536545       --> GCCGCGTCACCCGTGTGGATTTGGGTAATTCAAACCTTTCAGGACATCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD552021       --> GCCGCGTCACTCGTGTGGACTTGGGTAATTCAAACCTTTCAGGACATCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914179       --> GCCGCGTCACTCGTGTGGACTTGGGTAATTCAAACCTTTCAGGACATCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548750       --> GCCGCGTCACTCGTGTGGACTTGGGTAATTCAAACCTTTCAGGACATCTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN18134        --> GCACCTGAGCTTGGGAAGCTCGAGCATTTACAGTATTTGGAGCTGTACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- GCACCTGAGCTTGGGAAGCTCGAGCATTTACAGTATTTGGAGCTGTACAA
FY441317       <-- GCACCTGAGCTCGGGAAGCTCGAGCATTTACAGTATTTGGAGCTGTACAA
EV540969       <-- GCACCTGAGCTTGGCAAGCTCGAGCATTTACAGTATTTGGAGCTGTACAA
EY910274       <-- GCACCTGAGCTTGGGAAGCTCGAGCATTTACAGTATTTGGAGCTGTACAA
FY440143       <-- GCACCTGAGCTCGGGAAGCTCGAGCATTTACAGTATTTGGAGCTGTACAA
FD544895       <-- ........GCTTGGGAAGCTCGAGCATTTACAGTATTTGGAGCTGTACAA
FY445423       <-- ..................................................
FD973750       --> GCACCTGAGCTTGGGAAGCTCGAGCATTTACAGTATTTGGAGCTGTACAA
FD974060       --> GCACCTGAGCTTGGGAAGCTCGAGCATTTACAGTATTTGGAGCTGTACAA
EX754353       --> GCACCTGAGCTTGGGAAGCTCGAGCATTTACAGTATTTGGAGCTGTACAA
EV537361       --> GCACCTGAGCTTGGCAAGCTCGGGCATTTACAGTATTTGGAGCTGTACAA
EV536545       --> GCACCTGAGCTTGGCAAGCTCGAGCATTTACAGTATTTGGAGCTGTACAA
FD552021       --> GCACCTGAGCTTGGGAAGCTCGAGCATTTACAGTATTTGGAGCTGTACAA
EY914179       --> GCACCTGAGCTTGGGAAGCTCGAGCATTTACAGTATTTGGAGCTGTACAA
FD548750       --> GCACCTGAGCTTGGGAAGCTCGAGCATTTACAGTATTTGGAGCTGTACAA

               501    -    551
UN18134        --> AAACAAAATAGAAGGGACTATACCTTCTGAACTTGAAAATCTGAAGAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- AAACAAAATAGAAGGGACTATACCTTCTGAACTTGAAAATCTGAAGAACC
FY441317       <-- AAACAAAATAGAAGGGACTATACCTTCTGAACTTGAAAATCTGAAGAACC
EV540969       <-- AAACAAAATAGAAGGGACTATACCTTCTGAACTTGAAAATCTGAAGAACC
EY910274       <-- AAACAAAATAGAGGGGACTATACCTTCTGAACTTGAAAATCTGAAGAACC
FY440143       <-- AAACAAAATAGAAGGGACTATACCTTCTGAACTTGAAAATCTGAAGAACC
FD544895       <-- AAACAAAATAGAAGGGACTATACCTTCTGAACTTGAAAATCTGAAGAACC
FY445423       <-- ..................................................
FD973750       --> AAACAAAATAGAAGGGACTATACCTTCTGAACTTGAAAATCTGAAGAACC
FD974060       --> AAACAAAATAGAAGGGACTATACCTTCTGAACTTGAAAATCTGAAGAACC
EX754353       --> AAACAAAATAGAAGGGACTATACCTTCTGAACTTGAAAATCTGAAGAACC
EV537361       --> AAACAAAATAGAAGGGACTATACCTTCTGAACTTGAAAATCTGAAGAACC
EV536545       --> AAACAAAATAGAAGGGACTATACCTTCTGAACTTGAAAATCTGAAGAACC
FD552021       --> AAACAAAATAGAAGGGACTATACCTTCTGAACTTGAAAATCTGAAGAACC
EY914179       --> AAACAAAATAGAGGGGACTATACCTTCTGAACTTGAAAATCTGAAGAACC
FD548750       --> AAACAAAATAGAAGGGACTATACCTTCTGAACTTGAAAATCTGAAGAACC

               551    -    601
UN18134        --> TCATCAGCTTGGATCTGTACAACAACAATCTTACTGGGAAAATCCCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- TCATCAGCTTGGATCTGTACAACAACAATCTTACTGGGAAAATCCCTTCT
FY441317       <-- TCATCAGCTTGGATCTGTACAACAACAATCTTACTGGGAAAATCCCTTCT
EV540969       <-- TCATCAGCTTGGATCTGTACAACAACAATCTTACTGGGAAAATCCCTTCT
EY910274       <-- TCATCAGCTTGGATCTGTACAACAACAATCTTACTGGGAAAATCCCTTTT
FY440143       <-- TCATCAGCTTGGATCTGTACAACAACAATCTTACTGGGAAAATCCCTTCT
FD544895       <-- TCATCAGCTTGGATCTGTACAACAACAATCTTACTGGGAAAATCCCTTCT
FY445423       <-- ..................................................
FD973750       --> TCATCAGCTTGGATCTGTACAACAACAATCTTACTGGGAAAATC......
FD974060       --> TCATCAGCTTGGATCTGTACAACAACAATCTTACTGGGAAAATCCCTTCT
EX754353       --> TCATCAGCTTGGATCTGTACAACAACAATCTTACTGGGAAAATCCCTTCT
EV537361       --> TCATCAGCTTGGATCTGTACAACAACAATCTTACTGGGAAAATCCCTTCT
EV536545       --> TCATCAGCTTGGATCTGTACAACAACAATCTTACTGGGAAAATCCCTTCT
FD552021       --> TCATCAGCTTGGATCTGTACAACAACAATCTTACTGGGAAAATCCCTTCT
EY914179       --> TCATCAGCTTGGATCTGTACAACAACAATCTTACTGGGAAAATCCCTTCT
FD548750       --> TCATCAGCTTGGATCTGTACAACAACAATCTTACTGGGAAAATCCCTTCT

               601    -    651
UN18134        --> TCTTTGGGAAAATTGAAGTCTCTGGTCTTTCTACGACTCAACGACAACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- TCTTTGGGAAAATTGAAGTCTCTGGTCTTTTTACGACTCAACGACAACCA
FY441317       <-- TCTTTGGGAAAACTGAAGTCTCTGGTCTTTCTACGACTCAACGACAACCA
EV540969       <-- TCTTTGGGAAAATTGAAGTCTCTCGTCTTTTTACGACTCAACGACAACCA
EY910274       <-- TCTTTGGGAAAATTGAAGTCTCTGGTCTTTTTACGACTCAACGACAACCA
FY440143       <-- TCTTTGGGAAAACTGAAGTCTCTGGTCTTTCTACGACTCAACGACAACCA
FD544895       <-- TCTTTGGGAAAATTGAAGTTTTTGGTCTTTTTACGACTCAACGACAACCA
FY445423       <-- ..................................................
FD973750       --> ..................................................
FD974060       --> TCTTTGGGAAAATTGAAGTCTCTGGTCTTTCTACGACTCAACGACAACCA
EX754353       --> TCTTTGGGAAAATTGAAGTCTCTGGTCTTTCTACGACTCAACGACAACCA
EV537361       --> TCTTTGGGAAAATTGAAGTCTCTCGTCTTTCTACGACTCAACGACAACCA
EV536545       --> TCTTTGGGAAAATTGAAGTCTCTCGTCTTTCTACGACTCAACGACAACCA
FD552021       --> TCTTTGGGAAAATTGAAGTCTCTGGTCTTTCTACGACTCAACGACAACCA
EY914179       --> TCTTTGGGAAAATTGAAGTCTCTGGTCTTTCTACGACTCAACGACAACCA
FD548750       --> TCTTTGGGAA........................................

               651    -    701
UN18134        --> ATTGACTGGTCCAATCCCTAAAGAACTCACGAAAATCCCAAGCCTTAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- ATTGACTGGTCCAATCCCTAAAGAACTCACGAAAATCCCAAGCCTTAAAG
FY441317       <-- ATTGACTGGTCCAATCCCTAAAGAACTCACGAAAATCCCAAGCCTTAAAG
EV540969       <-- ATTGACTGGTCCAATCCCTAAAGAACTCACGAAAATCCCAAGCCTTAAAG
EY910274       <-- ATTGACTGGTCCAATCCCTAAAGAACTCACGAAAATCCCAAGCCTTAAAG
FY440143       <-- ATTGACTGGTCCAATCCCTAAAGAACTCACGAAAATCCCAAGCCTTAAAG
FD544895       <-- ATTGACTGGTCCAATCCCTAAAGAACTCACGAAAATCCCAAGCCTTAAAG
FY445423       <-- .............................CGAAAATCCCAAGCCTTAAAG
FD973750       --> ..................................................
FD974060       --> ATTGACTGGTCCAATCCCTAAAGAACTCACGAAAATCCCAAGCCTTAAAG
EX754353       --> ATTGACTGGTCCAATCCCTAAAGAACTCACGAAAATCCCAAGCCTTAAAG
EV537361       --> ATTGACTGGTCCAATCCCTAAAGAACTCACGAAAATCCCAAGCCTTAAAG
EV536545       --> ATTGACTGGTCCAATCCCTAAAGAACTCACGAAAATCCCAAGCCTTAAAG
FD552021       --> ATTGACTGGTCCAATCCCTAAAGAACTCACGAAAATCCCAAGCCTTAAAG
EY914179       --> ATTGACTGGTCCAATCCCTAAAGAACTCACGAAAATCCCAAGCCTTAAAG
FD548750       --> ..................................................

               701    -    751
UN18134        --> TCGTTGATGTATCGAACAATGATTTGTGTGGAACTATCCCAACAGAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- TCGTTGATGTATCGAACAATGATTTGTGTGGAACTATCCCAACAGAAGGA
FY441317       <-- TCGTTGATGTATCGAACAATGATTTGTGTGGAACTATCCCAACAGAAGGA
EV540969       <-- TCGTTGATGTATCGAACAATGATTTGTGTGGAACTATCCCAACAGAAGGA
EY910274       <-- TCGTTGATGTATCGAACAATGATTTGTGTGGAACTATCCCAACAGAAGGA
FY440143       <-- TCGTTGATGTATCGAACAATGATTTGTGTGGAACTATCCCAACAGAAGGA
FD544895       <-- TCGTTGATGTATCGAACAATGATTTGTGTGGAACTATCCCAACAGAAGGA
FY445423       <-- TCGTTGATGTATCGAACAATGATTTGTGTGGAACTATCCCAACAGAAGGA
FD973750       --> ..................................................
FD974060       --> TCGTTGATGTATCGAACAAT..............................
EX754353       --> TCGTTGATGTATCGAACAATGATTTGTGTGGAACT...............
EV537361       --> TCGTTGATGTATCGAACAATGATTTGTGTGGAACTATCCCAACAGAAAGA
EV536545       --> TCGTTGATGTATCGAACAATGATTTGTGTGGAACTATCCCAACAGAAAGA
FD552021       --> TCGTTGATGTATCGAACAATGATTTGTG......................
EY914179       --> TCGTTGATGTATCGAACAATGATTTGTG......................
FD548750       --> ..................................................

               751    -    801
UN18134        --> CCTTTCGGACACATTCCTTTGCAGAACTTTGAGAACAACTCGAGATTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- CCTTTCGGACACATTCCTCTGCAGAACTTTGAGAACAACTCGAGATTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY441317       <-- CCTTTCGGACACATTCCTTTGCAGAACTTTGAGAACAACTCGAGATTGGA  Raphanus sativus cv GSK3-1
EV540969       <-- CCTTTCGGACACATTCCTCTGCAGAACTTTGAGAACAACTCGAGATTGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910274       <-- CCTTTCGGACACATTCCTTTGCAGAACTTCGAGAACAACTCGAGATTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY440143       <-- CCTTTCGGACACATTCCTTTGCAGAACTTTGAGAACAACTCGAGATTGGA  Raphanus sativus cv GSK3-1
FD544895       <-- CCTTTCGGACACATTCCTTTGCAGAACTTTGAGAACAACTCGAGATTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445423       <-- CCTTTCGGACACATTCCTTTGCAGAACTTTGAGAACAACTCGAGATTGGA  Raphanus sativus cv GSK3-1
FD973750       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974060       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754353       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537361       --> CCTTTCGGACACATTCCTCTGCAGAACTTTGAGAACAACTCGAGATTGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536545       --> CCTTTCGGACACATTCCTCTGCAGAACTTTGA..................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD552021       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914179       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548750       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               801    -    851
UN18134        --> GGGGCCGGAACTAATCGGTCTTGCAAGCTACGACACCAACTGCAACTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- GGGGCCGGAACTAATCGGTCTTGCAAGCTACGACACCAACTGCAACTGAA
FY441317       <-- GGGGCCGGAACTAATCGGTCTTGCAAGCTACGACACCAACTGCAACTGAA
EV540969       <-- GGGGCCGGAACTAATCGGTCTTGCAAGCTACGACACCAACTGCAACTGAA
EY910274       <-- GGGGCCGGAACTAATCGGTCTTGCAAGCCACGACACCAACTGCAACTGAA
FY440143       <-- GGGGCCGGAACTAATCGGTCTTGCAAGCTACGACACCAACTGCAACTGAA
FD544895       <-- GGGGCCGGAACTAATCGGTCTTGCAAGCTACGACACCAACTGCAACTGAA
FY445423       <-- GGGGCCGGAACTAATCGGTCTTGCAAGCTACGACACCAACTGCAACTGAA
FD973750       --> ..................................................
FD974060       --> ..................................................
EX754353       --> ..................................................
EV537361       --> GGGGCCGGAACTAATCGGTCTTGCAAGCTACGACACCAACTGCAACTGAA
EV536545       --> ..................................................
FD552021       --> ..................................................
EY914179       --> ..................................................
FD548750       --> ..................................................

               851    -    901
UN18134        --> ACAACTGGCCAAACGACCTGAAAAAAAA-CAAGAAATGAGGGGGTGAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- ACAACTGGCAAAA-GACCT...............................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY441317       <-- ACAACTGGC-AAACGACCTGAAAAAAAA-CAAGAAATGAGGGGGTGAGAC  Raphanus sativus cv GSK3-1
EV540969       <-- ACAACTGGCCAAACGACCTGAAAAAAA--CAAGAAATGAGGGGGTG--AC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910274       <-- ACAACTGGCAAAA-GACCTGAAAAAAAAACAAGAAATGAGGGGG-GTGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY440143       <-- ACAACTGGC-AAACGACCTGAAAAAAAA-CAAGAAATGAGGGGGTGAGAC  Raphanus sativus cv GSK3-1
FD544895       <-- ACAACTGGCAAAA-GACCTGAAAAAAAAACAAGAAATGAGGGGG-GTGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445423       <-- ACAACTGGC-AAACGACCTGAAAAAAAA-CAAGAAATGAGGGGGTGAGAC  Raphanus sativus cv GSK3-1
FD973750       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974060       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754353       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537361       --> ACAACTGGCCAAACGACCTGAA............................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536545       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD552021       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914179       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548750       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               901    -    951
UN18134        --> CTTAGAAGAACACTTCACCACTTTATCAAAATATCACATCTATTATGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- ..................................................
FY441317       <-- CTTAGAAGAACACTTCACCACTTTATCAAAATATCACATCTATTATGTAA
EV540969       <-- CTTAGAAGAACACTTCACCACTTTATCAAAATATCACATCTATTATGTAA
EY910274       <-- CTTAGAAGAACACTTCACCACTTTATCAAAATATCACATCTATTATGTAA
FY440143       <-- CTTAGAAGAACACTTCACCACTTTATCAAAATATCACATCTATTATGTAA
FD544895       <-- CTTAGAAGAACACTTCACCACTTTATCAAAATATCACATCTATTATGTAA
FY445423       <-- CTTAGAAGAACACTTCACCACTTTATCAAAATATCACATCTATTATGTAA
FD973750       --> ..................................................
FD974060       --> ..................................................
EX754353       --> ..................................................
EV537361       --> ..................................................
EV536545       --> ..................................................
FD552021       --> ..................................................
EY914179       --> ..................................................
FD548750       --> ..................................................

               951    -   1001
UN18134        --> CAAGTATATATATGTATGTTCGTTGTGTGACACACTGAGATGTAACATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY441317       <-- CA-GTATATATATATATGTTCGTTGTGTGACACACTGAGATGTAACATTT  Raphanus sativus cv GSK3-1
EV540969       <-- CAAGTATATATATGTATGTTCGTTGTGTGACACACTGAGATGTAACATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910274       <-- CAAGTATATATATGTATGTTCGTTGTGTGACACACTGAGATGTAACATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY440143       <-- CA-GTATATATATATATGTTCGTTGTGTGACACACTGAGATGTAACATTT  Raphanus sativus cv GSK3-1
FD544895       <-- CAAGTATATATATGTATGTTCGTTGTGTGACACACTGAGATGTAACATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445423       <-- CA-GTATATATATATATGTTCGTTGTGTGACACACTGAGATGTAACATTT  Raphanus sativus cv GSK3-1
FD973750       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974060       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754353       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537361       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536545       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD552021       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914179       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548750       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               1001   -   1051
UN18134        --> GTTGTATTGGTAGCAAGTTCTTTACCTTTGTCTGCATTAACATTTGTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- ..................................................
FY441317       <-- GTTGTATTGGTAGCAAGTTCTTTACCTTTGTCTGCATTAACATTTGTGTG
EV540969       <-- GTTGTATTGGTAGCAAGTTCTTTATCTT-GTCTGCATTAACATTTGTGTG
EY910274       <-- GTTGTATTGGTAGCAAGTTCTTTACCTTTGTCTGCATTAACATTTGTGTG
FY440143       <-- GTTGTATTGGTAGCAAGTTCTTTACCTTTGTCTGCATTAACATTTGTGTG
FD544895       <-- GTTGTATTGGTAGCAAGTTCTTTACCTTTGTCTGCATTAACATTTGTGTG
FY445423       <-- GTTGTATTGGTAGCAAGTTCTTTACCTTTGTCTGCATTAACATTTGTGTG
FD973750       --> ..................................................
FD974060       --> ..................................................
EX754353       --> ..................................................
EV537361       --> ..................................................
EV536545       --> ..................................................
FD552021       --> ..................................................
EY914179       --> ..................................................
FD548750       --> ..................................................

               1051   -   1101
UN18134        --> TATGATCTGTCATATTAATACGAAAACTATGGATTTGTGTGCTTTATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547854       <-- ..................................................
FY441317       <-- TATGATCTGTCATATTAATACGAAAACTATGGATTTGT-TGCTT......
EV540969       <-- TATGATCTGTCATATTAATACAAAAACTACGGATTTGAGTGCTTTATTTT
EY910274       <-- TATGATCTGTCATATTAATACGAAAACTATGGATTTGTGTGCTct.....
FY440143       <-- TATGATCTGTCATATTAATACGAAAACTATGGATTT..............
FD544895       <-- TATGATCTGTCATATTAATACGAAAACTATGGATTTGTGTGCTTT.....
FY445423       <-- TATGATCTGTCATATTAATACGAAAACTATGGATTTGTGgctt.......
FD973750       --> ..................................................
FD974060       --> ..................................................
EX754353       --> ..................................................
EV537361       --> ..................................................
EV536545       --> ..................................................
FD552021       --> ..................................................
EY914179       --> ..................................................
FD548750       --> ..................................................