Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN18285

               1      -     51
UN18285        --> GCATCCAGTGTATTGCACTAACGTCATCGTTAAAGGTGTTACCATTCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- ..................................................
FD537156       <-- ..................................................
FD966338       <-- ..................................................
FD934441       <-- ..................................................
EY902514       <-- ..................................................
FD937928       --> GCATCCAGTGTATTGCACTAACGTCATCGTTAAAGGTGTTACCATTCTCG
EY906302       --> ..................................................

               51     -    101
UN18285        --> CTCCTATCGATTCTCCTAATACCGATGGAATCAACCCTGATTCATGCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- ........................................TTCATGCACC
FD537156       <-- ..................................................
FD966338       <-- ..................................................
FD934441       <-- ..................................................
EY902514       <-- ..................................................
FD937928       --> CTCCTATCGATTCTCCTAATACCGATGGAATCAACCCTGATTCATGCACC
EY906302       --> ..................................................

               101    -    151
UN18285        --> AACACATTGATCGAAGACTGTTTCGTAGTCTCCGGAGACGATTGCATCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- AACACATTGATCGAAGACTGTTTCGTAGTCTC-GGAGACGATTGCATCGC
FD537156       <-- ..................................................
FD966338       <-- ..................................................
FD934441       <-- ..................................................
EY902514       <-- ..................................................
FD937928       --> AACACATTGATCGAAGACTGTTTCGTAGTCTCCGGAGACGATTGCATCGC
EY906302       --> ..................................................

               151    -    201
UN18285        --> CGTCAAGAGCGGTTGGTATCAGTTCGGTATCAAAGTCGGAATGCCAACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- CGTCAAGAGCGGTTGGGATCAGTTCGGTATCAAAGTCGGAATGCCAACTC
FD537156       <-- ..................................................
FD966338       <-- ..................................................
FD934441       <-- ..................................................
EY902514       <-- ..................................................
FD937928       --> CGTCAAGAGCGGTTGGTATCAGTTCGGTATCAAAGTCGGAATGCCAACTC
EY906302       --> ..................gCAGTTCGGTATCAAAGTCGGCATGCCAACTC

               201    -    251
UN18285        --> AGCAACTCTCTATCCGAAGGCTCACATGCATCTCTCCCGACAGTGCTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- AGCAACTCTCTATCCGAAGGCCCACATGCATCTCTCCCGACAGTGCTGGA
FD537156       <-- ..................................................
FD966338       <-- ..................................................
FD934441       <-- ..................................................
EY902514       <-- ..................................................
FD937928       --> AGCAACTCTCTATCCGAAGGCTCACATGCATCTCTCCCGACAGTGCTGGA
EY906302       --> AGCAACTCTCGATCCGAAGGCTTACATGCATATCTCCCGATAGTGCTGGA

               251    -    301
UN18285        --> ATAGCACTGGGAAGTGAAATGTCCGGTGGGATCAAAGACGTTAGGATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- ATAGCACTGGGAAGTGAAATGTCCGGTGGGATCAAAGACGTTAGGATGGA
FD537156       <-- ..................................................
FD966338       <-- ..................................................
FD934441       <-- ..................................................
EY902514       <-- ..................................................
FD937928       --> ATAGCACTGGGAAGTGAAATGTCCGGTGGGATCAAAGACGTTAGGATGGA
EY906302       --> ATAGCACTCGGAAGTGAAATGTCCGGAGGAATCAAAGACGTTAGGATGGA

               301    -    351
UN18285        --> AGACATAACGTTGCTTCAGACACAATCCGCTATCCGAATCAAAACAGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- AGACATAACGTTGCTTCAGACACAATCCCCTATCCGAATCAAAACAGCTG
FD537156       <-- ...............................ATCGGAATCAAAACAGCTG
FD966338       <-- ...............................ATCCGAATCAAAACAGCTG
FD934441       <-- ..................................................
EY902514       <-- ..................................................
FD937928       --> AGACATAACGTTGCTTCAGACACAATCCGCTATCCGAATCAAAACAGCTG
EY906302       --> AGGCATAACGTTGCTTCAGACACAATCCGCTATCCGAATCAAAACAGCTG

               351    -    401
UN18285        --> TTGGTCGTGGAGGTTACGTTAAAGATATCTTTGCTCGAAGGTTCACAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- TTGGTCGTGGAGGTTACGTTAAAGATATCTTTGCTCGAAGGTTCACAATG
FD537156       <-- TTGGTCGTGGAGGTTACGTTAAAGATATCTTTGCTCGAAGGTTCACAATG
FD966338       <-- TTGGTCGTGGAGGTTACGTTAAAGATATCTTTGCTCGAAGGTTCACAATG
FD934441       <-- ............GTTACGTTAAAGATATCTTTGCTCGAAGGTTCACAATG
EY902514       <-- ..................................................
FD937928       --> TTGGTCGTGGAGGTTACGTTAAAGATATCTTTGCTCGAAGGTTCACAATG
EY906302       --> TTGGTCGTGGAGGTTACGTTAAAGATATCTTTGCTCGAAGGTTCACAATG

               401    -    451
UN18285        --> AAGACAATGAAATACGTTTTCTGGATGAGTGGTGCCTATAACCAACACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- AAGACAATGAAATACGTTTTCTGGATGAGTGGTGCCTATAACCAACACCC
FD537156       <-- AAGACAATGAAATACGTTTTCTGGATGAGTGGTGCCTATAACCAACACCC
FD966338       <-- AAGACAATGAAATACGTTTTCTGGATGAGTGGTGCCTATAACCAACACCC
FD934441       <-- AAGACAATGAAATACGTTTTCTGGATGAGTGGTGCCTATAACCAACACCC
EY902514       <-- ..................................................
FD937928       --> AAGACAATGAAATACGTTTTCTGGATGAGTGGTGCCTATAACCAACACCC
EY906302       --> AAGACAATGAAATACGTTTTCTGGATGAGTGGTGCCTATAACCAACACCC

               451    -    501
UN18285        --> TGCTTCGGGTTATGACCCCAAGGCTATGCCCGAGATTACGAATATTAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- TGCTTCGGGTTATGACCCCAAGGCTATGCCCGAGATTACGAATATTAATT  Raphanus sativus var. oleiformis
FD537156       <-- TGCTTCAGGTTATGACCCCAAGGCTATGCCCGAGATTACGAATATTAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966338       <-- TGCTTCAGGTTATGACCCCAAGGCTATGCCCGAGATTACGAATATTAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD934441       <-- TGCTTCGGGTTATGACCCCAAGGCTATGCCCGAGATTACGAATATTAATT  Raphanus sativus var. oleiformis
EY902514       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD937928       --> TGCTTCGGGTTATGACCCCAAGGCTATGCCCGAGATTACGAATATTAATT  Raphanus sativus var. oleiformis
EY906302       --> TGCTTCAGGTTATGACCCCAAGGCTATGCCCGAGATTACGAATATTAATT  Raphanus raphanistrum subsp. raphanistrum (MS)

               501    -    551
UN18285        --> ACCGTGACATGACCGCGGATAACGTTACGCAGCCCGCTAGGCTCGATGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- ACCGTGACATGACCGCGGATAACGTTACGCAGCCCACTAGGCTCGACGGG  Raphanus sativus var. oleiformis
FD537156       <-- ACCGTGACATGACCGCAGATAACGTTACGCAGCCCGCTAGGCTCGATGGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966338       <-- ACCGTGACATGACCGCGGATAACGTTACGCAGCCCGCTAGGCTCGATGGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD934441       <-- ACCGTGACATGACCGCAGATAACGTTACGCAGCCCGCTAGGCTCGACGGG  Raphanus sativus var. oleiformis
EY902514       <-- ..CGTGACATGACCGCGGATAACGTTACGCAGCCCGCTAGGCTCGATGGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD937928       --> ACCGTGACATGACCGCAGATAACGTTACGCAGCCCGCTAGGCTCGACGGG  Raphanus sativus var. oleiformis
EY906302       --> ACCGTGACATGACCGCGGATAACGTTACGCAGCCCGCTAGGCTCGATGGG  Raphanus raphanistrum subsp. raphanistrum (MS)

               551    -    601
UN18285        --> TTCACCAACGATCCTTTCACAAAGATATGTATGTCGAATATAAACATTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- TTCACCAACGATCCTTTCACAAAGATATGTATGTCGAATATAAACATTGC
FD537156       <-- TTCATCAACGATCCTTTCACAAAGATATGTATGTCGAATATAAACATTGC
FD966338       <-- TTCACCAACGATCCTTTCACAAAGATATGTATGTCGAATATAAACATTGC
FD934441       <-- TTCACCAACGATCCTTTCACAAAGATATGTATGTCGAATATAAACATTGC
EY902514       <-- TTCACCAACGATCCTTTCACAAAGATATGTATGTCGAATATAAACATTGC
FD937928       --> TTCACCAACGATCCTTTCACAAAGATATGTATGTCGAATATAAACATTGC
EY906302       --> TTCACCAACGATCCTTTCACAAAGATATGTATGTCGAATATAAACATTGC

               601    -    651
UN18285        --> TTTGGCTGCTGAGCCCAAGAAGTTGCTGTGGAATTGTACGGCCATTTCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- TTTGGCTGCTGAGCCCAAGAAGTTGCTGTGGAATTGTACGGCCATCTCCG
FD537156       <-- TTTGGCTGCTGAGCCCAAGAAGTTGCTGTGGAATTGTACGGCCATTTCCG
FD966338       <-- TTTGGCTGCTGAGCCCAAGAAGTTGCTGTGGAATTGTACGGCCATTTCCG
FD934441       <-- TTTGGCTGCTGAGCCCAAGAAGTTGCTGTGGAATTGTACGGCCATTTCCG
EY902514       <-- TTTGGCTGCTGAGCCCAAGAAGTTGCTGTGGAATTGTACGGCCATTTCCG
FD937928       --> TTTGGCTGCTGAGCCCAAGAAGTTGCTGTGGAATTG..............
EY906302       --> TTTGGCTGCTGAGCCCAAGAAGTTGCTGTGGAATTGTACGGCCATCTCCG

               651    -    701
UN18285        --> GAATTTCGAGCAAGGTGACGCCAAAACCGTGTAGCTTGTTACCAGAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- GAATTTCGAGCAAGGTGACGCCAAAACCGTGTAGCTTGTTACCGGAGAAA
FD537156       <-- GAATTTCGAGCAAGGTGACGCCAAAACCGTGTAGCTTGTTACCAGAGAAA
FD966338       <-- GAATTTCGAGCAAGGTGACGCCAAAACCGTGTAGCTTGTTACCAGAGAAA
FD934441       <-- GAATTTCGAGCAAGGTGACGCCAAAACCGTGTAGCTTGTTACCGGAGAAA
EY902514       <-- GAATTTCGAGCAAGGTGACGCCAAAACCGTGTAGCTTGTTACCAGAGAAA
FD937928       --> ..................................................
EY906302       --> GAATTTCGAGCAAGGTGACGCCAAAACCGTGTAGCTTGTTACCAGAGAAA

               701    -    751
UN18285        --> TCTCCCATTGACTGTGCTTTTCCTGTTGATAAGATTCCTATTGAATCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- TCTCCCATTGACTGTGCTTTTCCTGTTGATAAGATTCCTATTGAAACTGT
FD537156       <-- TCTCCCATTGACTGTGCTTTTCCTGTTGATAAGATTCCTATTGAATCTGT
FD966338       <-- TCTCCCATTGACTGTGCTTTTCCTGTTGATAAGATTCCTATTGAATCTGT
FD934441       <-- TCTCCCATTGACTGTGCTTTTCCTGTTGATAAGATTCCTATTAAAACTGT
EY902514       <-- TCTCCCATTGACTGTGCTTTTCCTGTTGATAAGATTCCTATTGAATCTGT
FD937928       --> ..................................................
EY906302       --> TCTCCCATTGACTGTGCTTTTCCTGTTGATAAGATTCCTATTGAATCTGT

               751    -    801
UN18285        --> TGTCCTGAACAAATGCTCTGCTTAGAGAATGTTGCGGATATCTCATATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- TGTCCTGAACAAATGCTCTGCTTAGAGAATGTTGCGGATATCTCATATTT
FD537156       <-- TGTCCTGAACAAATGTTCTGCTTAGAGAATGTTGCGGATATCTCATATTT
FD966338       <-- TGTCCTGAACAAATGCTCTGCTTAGAGAATGTTGCGGATATCTCATATTT
FD934441       <-- CGTCCTGAACAAATGCTCTGCTTAGAGAATGTTGCGGATATCTCATATTT
EY902514       <-- TGTCCTGAACAAATGCTTTGCTTAGAGAATGTTGCGGATATCTCATATTT
FD937928       --> ..................................................
EY906302       --> TGTCCTGAACAAATGCTCTGCTTAGAGAATGTTGCGGATATCTCATATTT

               801    -    851
UN18285        --> TTTAATTTTATCATCATAAAATTTATATACCTTAGTGAACATGGCCCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- TTTAATTTTATCATCATATAATTTATATACCTTAGAGAACATGGCCCAGC
FD537156       <-- TTTAATTTTATCATCATAAAATTTATATACCCTAGTGAACATGGCCCAGC
FD966338       <-- TTTAATTTTATCATCATAAAATTTATATACCTTAGTGAACATGGCCCAGC
FD934441       <-- TTTAATTTTATCATCATATAATTTATATACCTTAGAGAACATGGCCCAGC
EY902514       <-- TTTAATTTTATCATCATAAAATTTATATACCTTAGTGAATATGGCCCAGC
FD937928       --> ..................................................
EY906302       --> TTTAATTTTATCATCATAAAATTTATATACCTTAGTGAATATGGCCCAGC

               851    -    901
UN18285        --> TGCTACTGTATTGTATAAAGCTGATTAGGTTCATGCAATGGTTTTACTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- TGCTACTGTATTGTATAAAGCTGAT-AGGTTCATGCAATGGTTTTACTAT
FD537156       <-- TGCTACTGTATTGTATAAAGCTGATTAGGTTCATGCAATGGTTTTACTAT
FD966338       <-- TGCTACTGTATTGTATAAAGCTGATTAGGTTCATGCAATGGTTTTACTAT
FD934441       <-- TGCTACTGTATTGTATAAAGCTGAT-AGGTTCATGCAATGGTTTTACTAT
EY902514       <-- TGCTACTGTATTGTATAAAGCTGATTAGGTTCATGCAATGGTTTTACTAT
FD937928       --> ..................................................
EY906302       --> TGCTACTGTATTGTATAAAGCTGATTAG-TTCATGCAATGGTTT-ACTAT

               901    -    951
UN18285        --> ACTATAAAGCTGATAGGTTCATGCAATGGTTTTACTATACTAAACGAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893483       <-- ACc...............................................
FD537156       <-- ACTATAAA..........................................
FD966338       <-- ACTATAAAGCTGATAGGTTCATac..........................
FD934441       <-- ACTAaacgaagttatataattagctttgtgg...................
EY902514       <-- ACTATAAAGCTGATAGGTTCATGCAATGGTTTTACTATACTAAACGAAGT
FD937928       --> ..................................................
EY906302       --> ACTATAAAGCTGATAG--TCATGCAATGGTTT-ACTATACTAAcgagtat

               951    -   1001
UN18285        --> TATATAATTAGCTTTGTGG
                   ~~~~~~~~~~~~~~~~~~~
EX893483       <-- ...................
FD537156       <-- ...................
FD966338       <-- ...................
FD934441       <-- ...................
EY902514       <-- TATATAATTAGCTTTGTGG
FD937928       --> ...................
EY906302       --> ...................