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Alignment for radish unigene UN18465

               1      -     51
UN18465        --> GGACTTAGCTAGGGAACATAAAAAACCTCTCTCTCCCGTTTTCTCCAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571927       <-- ..............................CTCTCCCGTTTTCTCCAACT
FD977551       <-- ..................................................
EY917427       <-- ..................................................
FD974353       <-- ..................................................
EV572123       <-- ..................................................
EY921236       --> GGACTTAGCTAGGGAACATAAAAAACCTCTCTCTCCCGTTTTCTCCAACT
EV566899       --> ....ggAGCTAGGGAACATAAAAAACCTCTCTCTCCCGTTTTCTCCAACT
EV567129       --> ....ggAGCTAGGGAACATAAAAAACCTCTCTCTCCCGTTTTCTCCAACT
EX772516       --> ............................ggCTCTCCCGTTTTCTCCAACT
FD978036       --> ..................................................
FD981873       --> ..................................................

               51     -    101
UN18465        --> TCTCTCTAGACAACTTCAAAAATAAGATTCCGTCTCCGGTAGCCGGTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571927       <-- TCTCTCTAGACAACTTCAAAAATAAGATTCCGTCTCCGGTAGCCGGTGGC
FD977551       <-- .................................CTCCGGTAGCCGGTGGC
EY917427       <-- ..................................................
FD974353       <-- ..................................................
EV572123       <-- ..................................................
EY921236       --> TCTCTCTAGACAACTTCAAAAATAAGATTCCGTCTCCGGTAGCCGGTGGC
EV566899       --> TCTCTCTAGACAACTTCAAAAATAAGATTCCGTCTCCGGTAGCCGGTGGC
EV567129       --> TCTCTCTAGACAACTTCAAAAATAAGATTCCGTCTCCGGTAGCCGGTGGC
EX772516       --> TCTCTCTAGACAACTTCAAAAATAAGATTCCGTCTCCGGTAGCCGGTGGC
FD978036       --> ..................................................
FD981873       --> ..................................................

               101    -    151
UN18465        --> TTCGCCGCCGGTTACTGATTCCCTTTTTGCTTTGTAAATTAAATAAAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571927       <-- TTCGCCGCCGGTTACTGATTCCCTTTTTGCTTTGTAAATTAAATAAAACT
FD977551       <-- TTCGCCGCCGGTTACTGATTCCCTTTT-GCTTTGTAAATTAAATAAAACT
EY917427       <-- .......................TTTTTGCTTTGTAAATTAAATAAAACT
FD974353       <-- ..........................TTGCTTTGTAAATTAAATAAAACT
EV572123       <-- ............................GCTTTGTAAATTAAATAAAACT
EY921236       --> TTCGCCGCCGGTTACTGATTCCCTTTTTGCTTTGTAAATTAAATAAAACT
EV566899       --> TTCGCCGCCGGTTACTGATTCCCTTTTTGCTTTGTAAATTAAATAAAACT
EV567129       --> TTCGCCGCCGGTTACTGATTCCCTTTTTGCTTTGTAAATTAAATAAAACT
EX772516       --> TTCGCCGCCGGTTACTGATTCCCTTTTTGCTTTGTAAATTAAATAAAACT
FD978036       --> .......................TTTTTGCTTTGTAAATTAAATAAAACT
FD981873       --> .......................TTTTTGCTTTGTAAATTAAATAAAACT

               151    -    201
UN18465        --> TTCGATCTGTTGATCGATTTTAGTTTCTTCCGGTAGCGGATCTCTTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571927       <-- TTCGATCTGTTGATCGATTTTAGTTTCTTCCGGTAGCGGATCTCTTTTTC
FD977551       <-- TTCGATCTGTTGATCGATTTTAGTTTCTTCCGGTAGCGGATCTCTTTTTC
EY917427       <-- TTCGATCTGTTGATCGATTTTAGTTTCTTCCGGTAGCGGATCTCTTTTTC
FD974353       <-- TTCGATCTGTTGATCGATTTTAGTTTCTTCCGGTAGCGGATCTCTTTTTC
EV572123       <-- TTCGATCTGTTGATCGATTTTAGTTTCTTCCGGTAGCGGATCTCTTTTTC
EY921236       --> TTCGATCTGTTGATCGATTTTAGTTTCTTCCGGTAGCGGATCTCTTTTTC
EV566899       --> TTCGATCTGTTGATCGATTTTAGTTTCTTCCGGTAGCGGATCTCTTTTTC
EV567129       --> TTCGATCTGTTGATCGATTTTAGTTTCTTCCGGTAGCGGATCTCTTTTTC
EX772516       --> TTCGATCTGTTGATCGATTTTAGTTTCTTCCGGTAGCGGATCTCTTTTTC
FD978036       --> TTCGATCTGTTGATCGATTTTAGTTTCTTCCGGTAGCGGATCTCTTTTTC
FD981873       --> TTCGATCTGTTGATCGATTTTAGTTTCTTCCGGTAGCGGATCTCTTTTTC

               201    -    251
UN18465        --> CCTTGGAGATTTTGTTTGTGTTTTAAATCCGTTTTTCTCTTTTCCTAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571927       <-- CCTTGGAGATTTTGTTTGTGTTTTAAATCCGTTTTTCTCTTTTCCTAATC
FD977551       <-- CCTTGGAGATTTTGTTTGTGTTTTAAATCCGTTTTTCTCTTTTCCTAATC
EY917427       <-- CCTTGGAGATTTTGTTTGTGTTTTAAATCCGTTTTTCTCTTTTCCTAATC
FD974353       <-- CCTTGGAGATTTTGTTTGTGTTTTAAATCCGTTTTTCTCTTTTCCTAATC
EV572123       <-- CCTTGGAGATTTTGTTTGTGTTTTAAATCCGTTTTTCTCTTTTCCTAATC
EY921236       --> CCTTGGAGATTTTGTTTGTGTTTTAAATCCGTTTTTCTCTTTTCCTAATC
EV566899       --> CCTTGGAGATTTTGTTTGTGTTTTAAATCCGTTTTTCTCTTTTCCTAATC
EV567129       --> CCTTGGAGATTTTGTTTGTGTTTTAAATCCGTTTTTCTCTTTTCCTAATC
EX772516       --> CCTTGGAGATTTTGTTTGTGTTTTAAATCCGTTTTTCTCTTTTCCTAATC
FD978036       --> CCTTGGAGATTTTGTTTGTGTTTTAAATCCGTTTTTCTCTTTTCCTAATC
FD981873       --> CCTTGGAGATTTTGTTTGTGTTTTAAATCCGTTTTTCTCTTTTCCTAATC

               251    -    301
UN18465        --> TTTATATATATATCCTGTTTGATCTTGGGAGATTTTAATCTATTCAAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571927       <-- TTTATATATATATCCTGTTTGATCTTGGGAGATTTTAATCTATTCAAAAG  Raphanus raphanistrum subsp. landra
FD977551       <-- TTTATATATA--TCCTGTTTGATCTTGGGAGATTTTAATCTATTCAAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917427       <-- TTTATATATATATCCTGTTTGATCTTGGGAGATTTTAATCTATTCAAAAG  Raphanus raphanistrum subsp. landra
FD974353       <-- TTTATATATA--TCCTGTTTGATCTTGGGAGATTTTAATCTATTCAAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572123       <-- TTTATATATATATCCTGTTTGATCTTGGGAGATTTTAATCTATTCAAAAG  Raphanus raphanistrum subsp. landra
EY921236       --> TTTATATATATATCCTGTTTGATCTTGGGAGATTTTAATCTATTCAAAAG  Raphanus raphanistrum subsp. landra
EV566899       --> TTTATATATATATCCTGTTTGATCTTGGGAGATTTTAATCTATTCAAAAG  Raphanus raphanistrum subsp. landra
EV567129       --> TTTATATATATATCCTGTTTGATCTTGGGAGATTTTAATCTATTCAAAAG  Raphanus raphanistrum subsp. landra
EX772516       --> TTTATATATATATCCTGTTTGATCTTGGGAGATTTTAATCTATTCAAAAG  Raphanus raphanistrum subsp. landra
FD978036       --> TTTATATATAT--CCTGTTTGATCTTGGGAGATTTTAATCTATTCAAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981873       --> TTTATATATAT--CCTGTTTGATCTTGGGAGATTTTAATCTATTCAAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN18465        --> TTATGCTTGATTTGTTATTCAGTAGAGGAATCAATCTTCGCCTCCAATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571927       <-- TTATGCTTGATTTGTTATTCAGTAGAGGAATCAATCTTCGCCTCCAATAA  Raphanus raphanistrum subsp. landra
FD977551       <-- TTATGCATGATTTTTTATTCAGCAGAGGAATCAATCTTCGCCTCCAATAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917427       <-- TTATGCTTGATTTGTTATTCAGTAGAGGAATCAATCTTCCCCTCCAATAA  Raphanus raphanistrum subsp. landra
FD974353       <-- TTATGCTTGATTTTTTATTCAGTAGAGGAATCAATCTTCGCCTCCAATAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572123       <-- TTATGCTTGATTTGTTATTCAGTAGAGGAATCAATCTTCGCCTCCAATAA  Raphanus raphanistrum subsp. landra
EY921236       --> TTATGCTTGATTTGTTATTCAGTAGAGGAATCAATCTTCGCCTCCAATAA  Raphanus raphanistrum subsp. landra
EV566899       --> TTATGCTTGATTTGTTATTCAGTAGAGGAATCAATCTTCGCCTCCAATAA  Raphanus raphanistrum subsp. landra
EV567129       --> TTATGCTTGATTTGTTATTCAGTAGAGGAATCAATCTTCGCCTCCAATAA  Raphanus raphanistrum subsp. landra
EX772516       --> TTATGCTTGATTTGTTATTCAGTAGAGGAATCAATCTTCGCCTCCAATAA  Raphanus raphanistrum subsp. landra
FD978036       --> TTATGCTTGATTTTTTATTCAGTAGAGGAATCAATCTTCGCCTCCAATAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981873       --> TTATGCATGATTTTTTATTCAGCAGAGGAATCAATCTTCGCCTCCAATAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               351    -    401
UN18465        --> CGAGCGGAGTATCCAAAGCTGATAAAAGTCAAATTGTTTGATTAAGCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571927       <-- CGAGCGGAGTATCCAAAGCTGATAAAAGTCAAATTGTTTGATTAAGCGAA  Raphanus raphanistrum subsp. landra
FD977551       <-- CGAGCGGAGTATCCAAAGCTGATAAAAGTCGAATTGTTTGATTAAGCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917427       <-- CGAGCGGAGTATCCAAAGCTGATAAAAGTCAAATTGTTTGATTAAGCGAA  Raphanus raphanistrum subsp. landra
FD974353       <-- CGAGCGGAGTATCCAAAGCTGATAAAAGTCGAATTGTTTGATTAAGCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572123       <-- CGAGCGGAGTATCCAAAGCTGATAAAAGTCAAATTGTTTGATTAAGCGAA  Raphanus raphanistrum subsp. landra
EY921236       --> CGAGCGGAGTATCCAAAGCTGATAAAAGTCAAATTGTTTGATTAAGCGAA  Raphanus raphanistrum subsp. landra
EV566899       --> CGAGCGGAGTATCCAAAGCTGATAAAAGTCAAATTGTTTGATTAAGCGAA  Raphanus raphanistrum subsp. landra
EV567129       --> CGAGCGGAGTATCCAAAGCTGATAAAAGTCAAATTGTTTGATTAAGCGAA  Raphanus raphanistrum subsp. landra
EX772516       --> CGAGCGGAGTATCCAAAGCTGATAAAAGTCAAATTGTTTGATTAAGCGAA  Raphanus raphanistrum subsp. landra
FD978036       --> CGAGCGGAGTATCCAAAGCTGATAAAAGTCGAATTGTTTGATTAAGCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981873       --> CGAGCGGAGTATCCAAAGCTGATAAAAGTCGAATTGTTTGATTAAGCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               401    -    451
UN18465        --> GGAGACGGAAAGCGGTTTCAGATTGGCTGGAGTTTTCTTTTTGAAAACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571927       <-- GGAGACGGAAAGCGGTTTCAGATTGGCTGGAGTTTTCTTTTTGAAAACGT
FD977551       <-- GGAGACGGAAAGCGGTTTCAGATTGGCTGGAGTTTTCTTTTTGAAAACGT
EY917427       <-- GGAGACGGAAAGCGGTTTCAGATTGGCTGGAGTTTTCTTTTTGAAAACGT
FD974353       <-- GGAGACGGAAAGCGGTTTCAGATTGGCTGGAGTTTTCTTTTTGAAAACGT
EV572123       <-- GGAGACGGAAAGCGGTTTCAGATTGGCTGGAGTTTTCTTTTTGAAAACGT
EY921236       --> GGAGACGGAAAGCGGTTTCAGATTGGCTGGAGTTTTCTTTTTGAAAACGT
EV566899       --> GGAGACGGAAAGCGGTTTCAGATTGGCTGGAGTTTTCTTTTTGAAAACGT
EV567129       --> GGAGACGGAAAGCGGTTTCAGATTGGCTGGAGTTTTCTTTTTGAAAACGT
EX772516       --> GGAGACGGAAAGCGGTTTCAGATTGGCTGGAGTTTTCTTTTTGAAAACGT
FD978036       --> GGAGACGGAAAGCGGTTTCAGATTGGCTGGAGTTTTCTTTTTGAAAACGT
FD981873       --> GGAGACGGAAAGCGGTTTCAGATTGGCTGGAGTTTTCTTTTTGAAAACGT

               451    -    501
UN18465        --> TCTGGCAAGACTCTGCGTTTCATCTCTTTAAAGCTTCTCACTGCGTTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571927       <-- TCTGGCAAGACTCTGCGTTTCATCTCTTTAAAGCTTCTCACTGCGTTTAA
FD977551       <-- TCTGGCAAGACTCTGCGTTTCATCTCTTTAAAGCTTCTCACTGCGTTTAA
EY917427       <-- TCTGGCAAGACTCTGCGTTTCATCTCTTTAAAGCTTCTCACTGCGTTTAA
FD974353       <-- TCTGGCAAGACTCTGCGTTTCATCTCTTTAAAGCTTCTCACTGCGTTTAA
EV572123       <-- TCTGGCAAGACTCTGCGTTTCATCTCTTTAAAGCTTCTCACTGCGTTTAA
EY921236       --> TCTGGCAAGACTCTGCGTTTCATCTCTTTAAAGCTTCTCACTGCGTTTAA
EV566899       --> TCTGGCAAGACTCTGCGTTTCATCTCTTTAAAGCTTCTCACTGCGTTTAA
EV567129       --> TCTGGCAAGACTCTGCGTTTCATCTCTTTAAAGCTTCTCACTGCGTTTAA
EX772516       --> TCTGGCAAGACTCTGCGTTTCATCTCTTTAAAGCTTCTCACTGCGTTTAA
FD978036       --> TCTGGCAAGACTCTGCGTTTCATCTCTTTAAAGCTTCTCACTGCGTTTAA
FD981873       --> TCTGGCAAGACTCTGCGTTTCATCTCTTTAAAGCTTCTCACTGCGTTTAA

               501    -    551
UN18465        --> CACTGGTGATGGATGATGAATCTGAAAAGATCAACGGCGAATCGGAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571927       <-- CACTGGTGATGGATGATGAATCTGAAAAGATCAACGGCGAATCGGAAAGG  Raphanus raphanistrum subsp. landra
FD977551       <-- CACTGGCGATGGATGATGAATCTGAAAAGATCAACGGCGAATCGGAAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917427       <-- CACTGGTGATGGATGATGAATCTGAAAAGATCAACGGCGAATCGGAAAGG  Raphanus raphanistrum subsp. landra
FD974353       <-- CACTGGCGATGGATGATGAATCTGAAAAGATCAACGGCGAATCGGAAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572123       <-- CACTGGTGATGGATGATGAATCTGAAAAGATCAACGGCGAATCGGAAAGG  Raphanus raphanistrum subsp. landra
EY921236       --> CACTGGTGATGGATGATGAATCTGAAAAGATCAACGGCGAATCGGAAAGG  Raphanus raphanistrum subsp. landra
EV566899       --> CACTGGTGATGGATGATGAATCTGAAAAGATCAACGGCGAATCGGAAAGG  Raphanus raphanistrum subsp. landra
EV567129       --> CACTGGTGATGGATGATGAATCTGAAAAGATCAACGGCGAATCGGAAAGG  Raphanus raphanistrum subsp. landra
EX772516       --> CACTGGTGATGGATGATGAATCTGAAAAGATCAACGGCGAATCGGAAAGG  Raphanus raphanistrum subsp. landra
FD978036       --> CACTGGCGATGGATGATGAATCTGAAAAGATCAACGGCGAATCGGAAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981873       --> CACTGGCGATGGATGATGAATCTGAAAAGATCAACGGCGAATCGGAAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)

               551    -    601
UN18465        --> TGGAGCGGTCAAGCGGCTTCAACTAAACGGAGAAAGTGATTCACGGTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571927       <-- TGGAGCGGTCAAGCGGCTTCAACTAAACGGAGAAAGTGATTCACGGTTTT
FD977551       <-- TGGAGCGGTCAAGCGGCTTCAACTAAACGGAGAAAGTGATTCACGGTTTT
EY917427       <-- TGGAGCGGTCAAGCGGCTTCAACTAAACGGAGAAAGTGATTCACGGTTTT
FD974353       <-- TGGAGCGGTCAAGCGGCTTCAACTAAACGGAGAAAGTGATTCACGGTTTT
EV572123       <-- TGGAGCGGTCAAGCGGCTTCAACTAAACGGAGAAAGTGATTCACGGTTTT
EY921236       --> TGGAGCGGTCAAGCGGCTTCAACTAAACGGAGAAAGTGATTCACGGTTTT
EV566899       --> TGGAGCGGTCAAGCGGCTTCAACTAAACGGAGAAAGTGATTCACGGTTTT
EV567129       --> TGGAGCGGTCAAGCGGCTTCAACTAAACGGAGAAAGTGATTCACGGTTTT
EX772516       --> TGGAGCGGTCAAGCGGCTTCAACTAAACGGAGAAAGTGATTCACGGTTTT
FD978036       --> TGGAGCGGTCAAGCGGCTTCAACTAAACGGAGAAAGTGATTCACGGTTTT
FD981873       --> TGGAGCGGTCAAGCGGCTTCAACTAAACGGAGAAAGTGATTCACGGTTTT

               601    -    651
UN18465        --> CGATCCGGCAGAGATCCGGCGTCACCGCCGATGCTTCCTCCGATTCCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571927       <-- CGATCCGGCAGAGATCCGGCGTCACCGCCGATGCTTCCTCCGATTCCAGA
FD977551       <-- CGATCCGGCAGAGATCCGGCGTCACCGCCGATGCTTCCTCCGATTCCAGA
EY917427       <-- CGATCCGGCAGAGATCCGGCGTCACCGCCGATGCTTCCTCCGATTCCAGA
FD974353       <-- CGATCCGGTAGAGATCCGGCGTCACCGCCGATGCTTCCTCCGATTCCAGA
EV572123       <-- CGATCCGGCAGAGATCCGGCGTCACCGCCGATGCTTCCTCCGATTCCAGA
EY921236       --> CGATCCGGCAGAGATCCGGCGTCACCGCCGATGCTTCCTCCGATTCCAGA
EV566899       --> CGATCCGGCAGAGATCCGGCGTCACCGCCGATGCTTCCTCCGATTCCAGA
EV567129       --> CGATCCGGCAGAGATCCGGCGTCACCGCCGATGCTTCCTCCGATTCCAGA
EX772516       --> CGATCCGGCAGAGATCCGGCGTCACCGCCGATGCTTCCTCCGATTCCAGA
FD978036       --> CGATCCGGTAGAGATCCGGCGTCACCGCCGATGCTTCCTCCGATTCCAGA
FD981873       --> CGATCCGGCAGAGATCCGGCGTCACCGCCGATGCTTCCTCCGATTCCAGA

               651    -    701
UN18465        --> AAGGTCTAGCCACATCAAAGAGCATGTGTCGAGCATGCATTTTAGTTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571927       <-- AAGGTCTAGCCACATCAAAGAGCATGTGTCGAGCATGCATTTTAGTTATT  Raphanus raphanistrum subsp. landra
FD977551       <-- AAGGTCTAGCCACATCAAAGAGCACGTGTCGAGCATGCATTTTAGTTATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917427       <-- AAGGTCTAGCCACATCAAAGAGCATGTGTCGAGCATGCATTTTAGTTATT  Raphanus raphanistrum subsp. landra
FD974353       <-- AAGGTCTAGCCACATCAAAGAGCACGCGTCGAGCATGCATTTTAGTTATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572123       <-- AAGGTCTAGCCACATCAAAGAGCATGTGTCGAGCATGCATTTTAGTTATT  Raphanus raphanistrum subsp. landra
EY921236       --> AAG-TCTAGCCACATCAAAGAGCATGTGTCGAGCATGCATTTTAGT-ATT  Raphanus raphanistrum subsp. landra
EV566899       --> AAGGTCTAGCCACATCAAAGAGCATGTGTCGAGCATGCATTTTAGTTATT  Raphanus raphanistrum subsp. landra
EV567129       --> AAGGTCTAGCCACATCAAAGAGCATGTGTCGAGCATGCATTTTAGTTATT  Raphanus raphanistrum subsp. landra
EX772516       --> AAGGTCTAGCCACATCAAAGAGCATGTGTCGAGCATGCATTTTAGTTATT  Raphanus raphanistrum subsp. landra
FD978036       --> AAGGTCTAGCCACATCAAAGAGCACGCGTCGAGCATGCATTTTAGTTATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981873       --> AAGGTCTAGCCACATCAAAGAGCACGTGTCGAGCATGCATTTTAGTTATT  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN18465        --> CTTTAGATAACACGTGTAATTTTTTGAAGTAAAGACTGGGCTGAAATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571927       <-- CTTTAGATAACACGTGTAATTTTTTGAAGTAAAGACTGGGCTGAAATCTT
FD977551       <-- GTTTAGATAACACGTGTAATTTTTTGAAGTAAAGACTGGGCTGAAATCTT
EY917427       <-- CTTTAGATAACACGTGTAATTTTTTGAAGTAAAGACTGGGCTGAAATCTT
FD974353       <-- GTTTAGATAACACGTGCAATTTTTTGAAGTAAAGACTGGGCTGAAATCTT
EV572123       <-- CTTTAGATAACACGTGTAATTTTTTGAAGTAAAGACTGGGCTGAAATCTT
EY921236       --> CTT-AGATA-CACGTGTAATTTTT-GAAGTAAAGACTGGGCTGAA-TC-T
EV566899       --> CTTTAGATAACACGTGTAATTTTTTGAAGTAAAGACTGGGCTGAAATCTT
EV567129       --> CTTTAGATAACACGTGTAATTTTTTGAAGTAAAGACTGGGCTGAAATCTT
EX772516       --> CTTTAGATA-CACGTGTAATTTTT-GAAGTAA-GACTGG-CTGAA-TC-T
FD978036       --> GTTTAGATAACACGTGCAATTTTTTGAAGTAAAGACTGGGCTGAAATCTT
FD981873       --> -GTTAGATA-CACGTGTAATTTTTTGAAGTAAAGACTGGGCTGAAtct..

               751    -    801
UN18465        --> GTAAGGTGGGGTTGAATCCGTTTGTAATAGGGCTTAAAGCCTTTTAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571927       <-- GTAAGGTGGGGTTGAATCCGTTTGTAATAGGGCTTAAAGCCTTTTAAGCT  Raphanus raphanistrum subsp. landra
FD977551       <-- GTAAGGTGGGGTTAAATCCGTTTGTAATTGGGCTTAAAGCCTTTTAAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917427       <-- GTAAGGTGGGGTTGAATCCGTTTGTAATAGGGCTTAAAGCCTTTTAAGCT  Raphanus raphanistrum subsp. landra
FD974353       <-- GTAAGGTGGGGTTAAATCCGTTTGTAATTGGGCTTAAAGCCTTTTAAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572123       <-- GTAAGGTGGGGTTGAATCCGTTTGTAATAGGGCTTAAAGCCTTTTAAGCT  Raphanus raphanistrum subsp. landra
EY921236       --> GTAA-GTGGGGTTGA-TCCGTTTGTA-TAGGGCT-AAAGCTTTTagctat  Raphanus raphanistrum subsp. landra
EV566899       --> G.................................................  Raphanus raphanistrum subsp. landra
EV567129       --> GTAAGGTGGGGTTGAATCCGTTTGTAA.......................  Raphanus raphanistrum subsp. landra
EX772516       --> GTAA-GTGGGGTTGA-TCCGTTTG..........................  Raphanus raphanistrum subsp. landra
FD978036       --> GTAAG-TGGGGTTAAATCCGTTTGTAATTGGGCTTAAAGCCTTTTAAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981873       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               801    -    851
UN18465        --> TAATGATAAGCACAGTTGACC
                   ~~~~~~~~~~~~~~~~~~~~~
EV571927       <-- TAATGATAAGCACAGTTGAC.
FD977551       <-- TAATGATAAGCACAGTTGAC.
EY917427       <-- TAATGATAAGCACAGTTGACC
FD974353       <-- TAATGATAAGCACAGTTGACg
EV572123       <-- TAATGATAAGCACAGTTGAC.
EY921236       --> gatagc...............
EV566899       --> .....................
EV567129       --> .....................
EX772516       --> .....................
FD978036       --> TAATGATAAGCACAGTTGACg
FD981873       --> .....................