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Alignment for radish unigene UN18491

               1      -     51
UN18491        --> GGAGTTTTCGTCAGTCAGGAAGCAGAGTGAGAGTAAAAAAAATTGAACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- ..................................................
EX766511       <-- ..................................................
EY920424       <-- ..................................................
EV544592       <-- ..................................................
EY895394       <-- ..................................................
EY919277       <-- ..................................................
FD531000       <-- ..................................................
EY899679       --> GGAGTTTTCGTCAGTCAGGAAGCAGAGTGAGAGTAAAAAAAATTGAACGA
EV549029       --> .................GGAAGCAGAGTGAGAGTAAAAAAA-TTGAACGA
EY901222       --> ............................GAGAGTAAAAAAAATTGAACGA
FD535312       --> ............................GAGAGTAAAAAAAATTGAACGA
EX762185       --> ..................................................
EY923484       --> ..................................................

               51     -    101
UN18491        --> CCCGATGACAACTGTCTCCGGCGTCGTTGTTCTACCATTCCTATCTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- ..................................................
EX766511       <-- ..................................................
EY920424       <-- ..................................................
EV544592       <-- ..................................................
EY895394       <-- ..................................................
EY919277       <-- ..................................................
FD531000       <-- ..................................................
EY899679       --> CCCGATGACAACTGTCTCCGGCGTCGTTGTTCTACCATTCCTATCTCCTC
EV549029       --> CCCGATGACAACTGTCTCCGGCGTCGTTGTTCTACCATTCCTATCTTCTC
EY901222       --> CCCGATGACAACTGTCTCCGGCGTCGTTGTTCTACCATTCCTATCTCCTC
FD535312       --> CCCGATGACAACTGTCTCCGGCGTCGTTGTTCTACCATTCCTATCTCCTC
EX762185       --> ...................................gATTCCTATCTCCTC
EY923484       --> ..................................................

               101    -    151
UN18491        --> CTCCGCTTCGTCGCCCATTCTCCCGCCATCATCTCAGTCTGACCAAGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- ..................................................
EX766511       <-- ..................................................
EY920424       <-- ..................................................
EV544592       <-- ..................................................
EY895394       <-- ..................................................
EY919277       <-- ..................................................
FD531000       <-- ..................................................
EY899679       --> CTCCGCTTCGTCGCCCATTCTCCCGCCATCATCTCAGTCTGACCAAGATT
EV549029       --> CTCCGCTTCGTCGCCCATTCTCCCGCCATCATCTCAGTCTGACCAAGATT
EY901222       --> CTCCGCTTCGTCGCCCATTCTCCCGCCATCATCTCAGTCTGACCAAGATT
FD535312       --> CTCCGCTTCGTCGCCCATTCTCCCGCCATCATCTCAGTCTGACCAAGATT
EX762185       --> CTCCGCTTCGTCGCCCATTCTCCCGCCATCATCTCAGTCTGACCAAGATT
EY923484       --> ..................................................

               151    -    201
UN18491        --> CCTAGCGCTGGCTTACGGAGGAGGAAACAGGTCATTGTTGCTTTAGCGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- ..................................................
EX766511       <-- ..................................................
EY920424       <-- ..................................................
EV544592       <-- ..................................................
EY895394       <-- ..................................................
EY919277       <-- ..................................................
FD531000       <-- ..................................................
EY899679       --> CCTAGCGCTGGCTTACGGAGGAGGAAACAGGTCATTGTTGCTTTAGCGGC
EV549029       --> CCTAGCGCTGGCTTACGGAGGAGGAAACAGGTCATTGTTGCTTTAGCGGC
EY901222       --> CCTAGCGCTGGCTTACGGAGGAGGAAACAGGTCATTGTTGCTTTAGCGGC
FD535312       --> CCTAGCGCTGGCTTACGGAGGAGGAAACAGGTCATTGTTGCTTTAGCGGC
EX762185       --> CCTAGCGCTGGCTTACGGAGGAGGAAACAGGTCATTGTTGCTTTAGCGGC
EY923484       --> ..................................................

               201    -    251
UN18491        --> GGTTACGGCTTCAGAATCGCCATCGGAAGCCGCGTATGATCCGGAGCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- ..................................................
EX766511       <-- ..................................................
EY920424       <-- ..................................................
EV544592       <-- ..................................................
EY895394       <-- ..................................................
EY919277       <-- ..................................................
FD531000       <-- ..................................................
EY899679       --> GGTTACGGCTTCAGAATCGCCATCGGAAGCCGCGTATGATCCGGAGCTCC
EV549029       --> GGTTACGGCTTCAGAATCGCCATCGGAAGCCGCGTATGATCCGGAGCTCC
EY901222       --> GGTTACGGCTTCAGAATCGCCATCGGAAGCCGCGTATGATCCGGAGCTCC
FD535312       --> GGTTACGGCTTCAGAATCGCCATCGGAAGCCGCGTATGATCCGGAGCTCC
EX762185       --> GGTTACGGCTTCAGAATCGCCATCGGAAGCCGCGTATGATCCGGAGCTCC
EY923484       --> ..................................................

               251    -    301
UN18491        --> GTTTGGTTTTCGAGCTCGCCACTGATTCCGAGCTATACGAGCTCGAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- ..................................................
EX766511       <-- ..................................................
EY920424       <-- ..................................................
EV544592       <-- ..................................................
EY895394       <-- ..................................................
EY919277       <-- ..................................................
FD531000       <-- ..................................................
EY899679       --> GTTTGGTTTTCGAGCTCGCCACTGATTCCGAGCTATACGAGCTCGAGAGT
EV549029       --> GTTTGGTTTTCGAGCTCGCCACTGATTCCGAGCTATACGAGCTCGAGAGT
EY901222       --> GTTTGGTTTTCGAGCTCGCCACTGATTCCGAGCTATACGAGCTCGAGAGT
FD535312       --> GTTTGGTTTTCGAGCTCGCCACTGATTCCGAGCTATACGAGCTCGAGAGT
EX762185       --> GTTTGGTTTTCGAGCTCGCCACTGATTCCGAGCTATACGAGCTCGAGATT
EY923484       --> ..................................................

               301    -    351
UN18491        --> ATCCTCTTTGGTCCCAGTTACTTTAGTCCTCTGTTGAAATCAATCCCTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- ..................................................
EX766511       <-- ..................................................
EY920424       <-- ..................................................
EV544592       <-- ..................................................
EY895394       <-- ..................................................
EY919277       <-- ..................................................
FD531000       <-- ..................................................
EY899679       --> GTCCTCTTTGGTCCCAGTTACTTTAGTCCTCTGTTGAAATCAATCCCTAA
EV549029       --> ATCCTCTTTGGTCCCAGTTACTTTAGTCCTCTGTTGAAATCAATCCCTAA
EY901222       --> ATCCTCTTTGGTCCCAGTTACTTTAGTCCTCTGTTGAAATCAATCCCTAA
FD535312       --> ATCCTCTTTGGTCCCAGTTACTTTAGTCCTCTGTTGAAATCAATCCCTAA
EX762185       --> ATCCTCCTTGGTCCCAGTTACTTTAGTCCTCTGTTGAAATCAATCCCTAA
EY923484       --> ...............................................gga

               351    -    401
UN18491        --> CAAAGGAAGAGGAGGAGGAAGAGGTGAGAGGTTGATGATAGGGGAAGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- ..................................................
EX766511       <-- ..................................................
EY920424       <-- ..................................................
EV544592       <-- ..................................................
EY895394       <-- ..................................................
EY919277       <-- ..................................................
FD531000       <-- ..................................................
EY899679       --> CAAAGGAAGAGGAGGAGGAAGAGGTGAGAGGTTGATGATAGGGGAAGATA
EV549029       --> CAAAGGAAGAGGAGGAGGAAGAGGTGAGAGGTTGATGATAGGGGAAGATA
EY901222       --> CAAAGGAAGAGGAGGAGGAAGAGGTGATAGGTTGATGATAGGGGAAGATA
FD535312       --> CAAAGGAAGAGGAGGAGGAAGAGGTGAGAGGTTGATGATAGGGGAAGATA
EX762185       --> CAAAGGAAGAGGAGGAGGAAGAGGTGAGAGGTTGATGATAGGGGAAGATA
EY923484       --> gttttcgtcagtcaggaagcagaGTGAGAGGTTGATGATAGGGGAAGATA

               401    -    451
UN18491        --> TTGAGGTTCGAGATGGTTTTATCCAATCTCT-GAATCTAGAT-CTTGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- .................TTTTTCCA-TCTCT-GAATCTAGAT-CT-G-TT
EX766511       <-- ..................................................
EY920424       <-- ..................................................
EV544592       <-- ..................................................
EY895394       <-- ..................................................
EY919277       <-- ..................................................
FD531000       <-- ..................................................
EY899679       --> TTGAGGTTCGAGATGGTTTTATCCAATCTCTTGAATCTAGA.........
EV549029       --> TTGAGGTTCGAGATGGTTTTATCCAATCTCTTGAATCTAGATTCTTGTTT
EY901222       --> TTGAGGTTCGAGATGGTTTTATCCAATCTCTTGAATCTAGATTCTTGTTT
FD535312       --> TTGAGGTTCGAGATGGTTTTATCCAATCTCTTGAATCTAGATTCTTGTTT
EX762185       --> TTGAGGTTCGAGATGGTTTTATCCAATCTCTTGAATCTAGATTCTTGTTT
EY923484       --> TTGAGGTTCGAGATGGTTTTATTCAATCTCTTGAATCAAGATTCTTGTTT

               451    -    501
UN18491        --> CTCGCTGCTGATGCTCGCTCCACTCTCAGGGGTTGGAGACCTTCATACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- CTCGCTGCTGATGCTCGCTCCACTCTCAGGGGTTG-AGA-CTTCATACAG
EX766511       <-- ...................................GAGGCCTTCATACAG
EY920424       <-- ..................................................
EV544592       <-- ..................................................
EY895394       <-- ..................................................
EY919277       <-- ..................................................
FD531000       <-- ..................................................
EY899679       --> ..................................................
EV549029       --> CTCGCTGCTGATGCTCGCTCCACTCTCAGGGGTTGGAGACCTTCATACAG
EY901222       --> CTCGCTGCTGATGCTCGCTCCACTCTCAGGGGTTGGAGACCTTCATACAG
FD535312       --> CTCGCTGCTGATGCTCGCTCCACTCTCAGGGGTTGGAGACCTTCATACAG
EX762185       --> CTCGCTGCTGATGCTCGCTCCACTCTCAGGGGTTGGAGGCCTTCATACAG
EY923484       --> CTCGCTGCTGATGCTCGCTCCACTCTCAGGGGTTGGAGGCCTTCGTACAG

               501    -    551
UN18491        --> AAATGTTTTACTTGCGGTGAGGAATAAGTTGAGTATTCCCTGCTCCAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- AAATGTTTTACTTGCGGTGAGGAATAAGTTGAGTATTCC-TGCTCCAGCC
EX766511       <-- AAATGTTTTACTTGCGGTGAGGAATAAGTTGAGTATTCCCTGCTCCAGCC
EY920424       <-- .........................................GCTCCAGCC
EV544592       <-- ..................................................
EY895394       <-- ..................................................
EY919277       <-- ..................................................
FD531000       <-- ..................................................
EY899679       --> ..................................................
EV549029       --> AAATGTTTTACTTGCGGTGAGGAATAAGTTGAGTATTCCCTGCTCCAGCC
EY901222       --> AAATGTTTTACTTGCGGTGAGGAATAAGTTGAGTATTCCCTGCTCCAGCC
FD535312       --> AAATGTTTTACTTGCGGTGAGGAATAAGTTGAGTATTCCCTGCTCCAGCC
EX762185       --> AAATGTTTTACTTGCGGTGAGGAATAAGTTGAGTATTCCCTGCTCCAGCC
EY923484       --> AAACGTTTTACTTGCGGTGAGGAATAAGTTGAGTATTCCCTGCTCCAGCC

               551    -    601
UN18491        --> ACTTGCCAACGGAGGATCTCGAAGCTGAGATCTTTCTTTATCTTGTTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- ACTTGCCAACGGAGGATCTCGAAGCTGAGATCTTTCTTTATCTTGTTGAC
EX766511       <-- ACTTGCCAACGGAGGATCTCGAAGCTGAGATCTTTCTTTATCTTGTTGAC
EY920424       <-- ACTTGCCAACGGAGGATCTCGAAGCTGGGATCTTTCTTTATCTTGTTGAC
EV544592       <-- .....................AAGCTGAGATCTTTCTTTATCTTGTTGAC
EY895394       <-- .....................AAGCTGAGATCTTTCTTTATCTTGTTGAC
EY919277       <-- ..................................................
FD531000       <-- ..................................................
EY899679       --> ..................................................
EV549029       --> ACTTGCCAACGGAGGATCTCGAAGCTGAGATCTTTCTTTATCTTGTTGAC
EY901222       --> ACTTGCCAACGGAGGATCTCGAAGCTGAGATCTTTCTTTATCTTGTTGAC
FD535312       --> ACTTGCCAACGGAGGATCTCGAAGCTGAGATCTTTCTTTATCTTGCTGGC
EX762185       --> ACTTGCCAACGGAGGATCTCGAAGCTGAGATCTTTCTTTATCTTGTTGAC
EY923484       --> ACTTGCCAACGGAGGATCTCGAAGCTGGGATCTTTCTTTATCTTGTTGAC

               601    -    651
UN18491        --> AATTTCTCTAGTGAAGCATCAGGGATATTTCCTGGCTTGTGGGATAGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- AATTTCTCTAGTGAAGCATCAGGGATATTTCCTGGCTTGTGGGATAGTTC
EX766511       <-- AATTTCTCTAGTGAAGCATCAGGGATATTTCCTGGCTTGTGGGATAGTTC
EY920424       <-- AATTTCTCTAGTGAAGCATCAGGGATATTTCCTGGCTTGTGGGATAGTTC
EV544592       <-- AATTTCTCTAGTGAAGCATCAGGGATATTTCCTGGCTTGTGGGATAGTTC
EY895394       <-- AATTTCTCTAGTGAAGCATCAGGGATATTTCCTGGCTTGTGGGATAGTTC
EY919277       <-- .............AAGCATCAGGGATATTTCCTGGCTTGTGGGATAGTTC
FD531000       <-- ................................TGGCTTGTGGGATAGTTC
EY899679       --> ..................................................
EV549029       --> AATTTCTCTAGTGAAGCATCAGGGATATTTCCTGGCTTGTGGGATAGTTC
EY901222       --> AATTTCTCTAGTGAAGCATCAGG-ATATTTCCTGGCTTGTGGGATAGTTC
FD535312       --> AATTTCTCTAGTGAAGCATCAGG-ATATTTCCTGGCTTGTGGGATAGTct
EX762185       --> AATTTCTCTAGTGAAGCATCAGGGATATTTCCTGGCTTGTGGGATAGTTC
EY923484       --> AATTTCTCTAGTGAAGCATCAGGGATATTTCCTGGCTTGTGGGATAGTTC

               651    -    701
UN18491        --> TCAAGCATCGGAGGTGCAGGGAAGCTTAGAAGTCGGGCTCAGTAAATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- TCAAGCATCGGAGGTGCAGGGAAGCTTAGAAGTCGGGCTCAGTAAATGGA
EX766511       <-- TCAAGCATCGGAGGTGCAGGGAAGCTTAGAAGTCGGGCTCAGTAAATGGA
EY920424       <-- TCAAGCATCGGAGGTGCAGGGAAGCTTAGAAGTCGGGCTCAGTAAATGGA
EV544592       <-- TCAAGCATCGGAGGTGCAGGGAAGCTTAGAAGTCGGGCTCAGTAAATGGA
EY895394       <-- TCAAGCATCGGAGGTGCAGGGAAGCTTAGAAGTCGGGCTCAGTAAATGGA
EY919277       <-- TCAAGCATCGGAGGTGCAGGGAAGCTTAGAAGTCGGGCTCAGTAAATGGA
FD531000       <-- TCAAGCATCGGAGGTGCAGGGAAGCTTAGAAGTCGGGCTCAGTAAATGGA
EY899679       --> ..................................................
EV549029       --> TCAAGCATCGGAGGTGCAGGGAAGCTTAGAAGTCGGGCTCAGTAAATGGA
EY901222       --> TCAAGCATCGGAG-TGCAGG-AAGCTTAGAAGTCGGGCTCAGTAAATGGA
FD535312       --> c.................................................
EX762185       --> TCAAGCATCGGAGGTGCAGGGAAGCTTAGAAGTCGGGCTCAGTAAATGGA
EY923484       --> TCAAGCATCGGAGGTGCAGGGAAGCTTAGAAGTCGGGCTCAGTAAATGGA

               701    -    751
UN18491        --> AAGTTGAACTACTTGCTGCTCTAGAAGTAGGTGCTTCAGAGGTCCAATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- AAGTTGAACTACTTGCTGCTCTAGAAGTAGGTGCTTCAGAGGTCCAATCT
EX766511       <-- AAGTTGAACTACTTGCTGCTCTAGAAGTAGGTGCTTCAGAGGTCCAATCT
EY920424       <-- AAGTTGAACTACTTGCTGCTCTAGAAGTAGGTGCTTCAGAGGTCCAATCT
EV544592       <-- AAGTTGAACTACTTGCTGCTCTAGAAGTAGGTGCTTCAGAGGTCCAATTT
EY895394       <-- AAGTTGAACTACTTGCTGCTCTAGAAGTAGGTGCTTCAGAGGTCCAATCT
EY919277       <-- AAGTTGAACTACTTGCTGCTCTAGAAGTAGGTGCTTCAGAGGTCCAATCT
FD531000       <-- AAGTTGAACTACTTGCTGCTCTAGAAGTAGGTGCTTCAGAGGTCCAATCT
EY899679       --> ..................................................
EV549029       --> AAGTTGAACTACTTGCTGCTCTAGAAGT......................
EY901222       --> AAGTTGA-CTACTTGCTGCTCTAGAAGTAG-TGCTTCAGAG-TCC-ATCT
FD535312       --> ..................................................
EX762185       --> AAGTTGAACTACTTGCTGCTCTAGAAGTAGGTGCTTCAGAG-TCCAATCT
EY923484       --> AAGTTGAACTACTTGCTGCTCTAGAAGTAGGTGCTTCAGAGGTCCAATCT

               751    -    801
UN18491        --> ATGATTCTCAAGGGTGGTGGGATGATCACATTTGCCAAGATTTATCAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- ATGATTCTCAAGGGTGGTGGGATGATCACATTTGCCAAGATTTATCAGTT
EX766511       <-- ATGATTCTCAAGGGTGGTGGGATGATCACATTTGCCAAGATTTATCAGTT
EY920424       <-- ATGATTCTCAAGGGTGGTGGGATGATCACATTTGCCAAGATTTATCAGTT
EV544592       <-- ATGATTCTCAAGGGTGGTGGGATGATCACATTTGCCAAGATTTATCAGTT
EY895394       <-- ATGATTCTCAAGGGTGGTGGGATGATCACATTTGCCAAGATTTATCAGTT
EY919277       <-- ATGATTCTCAAGGGTGGTGGGATGATCACATTTGCCAAGATTTATCAGTT
FD531000       <-- ATGATTCTCAAGGGTGGTGGGATGATCACATTTGCCAAGATTTATCAGTT
EY899679       --> ..................................................
EV549029       --> ..................................................
EY901222       --> ATGATTCTCAAGG-TGGTGGGATGATCACATTTGCC..............
FD535312       --> ..................................................
EX762185       --> ATGATTCTCAAGGGTGGTGGGATGATCACATTTGCCA-GATTTATCAGTT
EY923484       --> ATGATTCTCAAGGGTGGTGGGATGATCACATTTGCCAAGATTTATCAGTT

               801    -    851
UN18491        --> GTTGGCTAAGAAACTATCTGGAAAAGTAATCCTTGAAGCTGCCAACTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- GTTGGCTAAGAAACTATCTGGAAAAGTAATCCTTGAAGCTGCCAACTACC
EX766511       <-- GTTGGCTAAGAAACTATCTGGAAAAGTAATCCTTGAAGCTGCCAACTACC
EY920424       <-- GTTGGCTAAGAAACTATCTGGAAAAGTAATCCTTGAAGCTGCCAACTACC
EV544592       <-- GTTGGCTAAGAAACTATCTGGAAAAGTAATCCTTGAAGCTGCCAACTACC
EY895394       <-- GTTGGCTAAGAAACTATCTGGAAAAGTAATCCTTGAAGCTGCCAACTACC
EY919277       <-- GTTGGCTAAGAAACTATCTGGAAAAGTAATCCTTGAAGCTGCCAACTACC
FD531000       <-- GTTGGCTAAGAAACTATCTGGAAAAGTAATCCTTGAAGCTGCCAACTACC
EY899679       --> ..................................................
EV549029       --> ..................................................
EY901222       --> ..................................................
FD535312       --> ..................................................
EX762185       --> GTTGGCTAAGAActat..................................
EY923484       --> GTTGGCTAAGAAACTATCTGGAAAAGTAATCCTTGAAGCTGCCAACTACC

               851    -    901
UN18491        --> AGATAAGAAGAGAGATGCTTAAAAAGGGTGGACAGTTAGCTGCTATTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- AGATAAGAAGAGAGATGCTTAAAAAGGGTGGACAGTTAGCTGCTATTAAC  Raphanus raphanistrum subsp. maritimus
EX766511       <-- AGATAAGAAGAGAGATGCTTAAAAAGGGTGGACAGTTAGCTGCTATTAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920424       <-- AGATAAGAAGAGAGATGCTTAAAAAGGGTGGACAGTTAGCTGCCATTAAC  Raphanus raphanistrum subsp. landra
EV544592       <-- AGATAAGAAGAGAGATGCTTAAAAAGGGTGGACAGTTAGCTGCTATTAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895394       <-- AGATAAGAAGAGAGATGCTTAAAAAGGGTGGACAGTTAGCTGCTATTAAC  Raphanus raphanistrum subsp. maritimus
EY919277       <-- AGATAAGAAGAGAGATGCTTAAAAAGGGTGGACAGTTAGCTGCCATTAAC  Raphanus raphanistrum subsp. landra
FD531000       <-- AGATAAGAAGAGAGATGCTTAAAAAGGGTGGACAGTTAGTTGCTATTAAC  Raphanus raphanistrum subsp. maritimus
EY899679       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV549029       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901222       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD535312       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX762185       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY923484       --> AGATAAGAAGAGAGATGCTTAAAAAGGGTGGACAGTTAGCTGCCATTAAC  Raphanus raphanistrum subsp. landra

               901    -    951
UN18491        --> TTGGAATCAAGAGCAGCTCTGCTTGCAGCAAAACAAGGGTTTGTAGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- TTGGAATCAAGAGCAGCTCTGCTTGCAGCAAAACAAGGGTTTGTAGGAGC  Raphanus raphanistrum subsp. maritimus
EX766511       <-- TTGGAATCAAGAGCAGCTCTGCTTGCAGCAAAACAAGGGTTTGTAGGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920424       <-- TTGGAATCTCGAGCAGCTCTGCTTGCAGCAAAACAAGGGTTTGTAGGAGC  Raphanus raphanistrum subsp. landra
EV544592       <-- TTGGAATCAAGAGCAGCTCTGCTTGCAGCAAAACAAGGGTTTGTAGGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895394       <-- TTGGAATCAAGAGCAGCTCTGCTTGCAGCAAAACAAGGGTTTGTAGGAGC  Raphanus raphanistrum subsp. maritimus
EY919277       <-- TTGGAATCTCGAGCAGCTCTGCTTGCAGCAAAACAAGGGTTTGTAGGAGC  Raphanus raphanistrum subsp. landra
FD531000       <-- TTGGAATCAAGAGCGGCTCTGCTTGCAGCAAAACAAGGGTTTGTAGGAGC  Raphanus raphanistrum subsp. maritimus
EY899679       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV549029       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901222       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD535312       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX762185       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY923484       --> TTGGAATCTCGAGCAGCTCTGCTTGCAGCAAAACAAGGGTTTGTAGGAGC  Raphanus raphanistrum subsp. landra

               951    -   1001
UN18491        --> TGCATCCAGATACCTTGGCTTAAGAACAGTGATGCAATTAGTCGGTCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- TGCATCCAGATACCTTGGCTTAAGAACAGTGATGCAATTAGTCGGTCCAA
EX766511       <-- TGCATCCAGATACCTTGGCTTAAGAACAGTGATGCAATTAGTCGGTCCAA
EY920424       <-- TGCATCCAGATACCTTGGCTTAAGAACAGTGATGCAATTAGTCGGTCCAA
EV544592       <-- TGCATCCAGATACCTTGGCTTAAGAACAGTGATGCAATTAGTCGGTCCAA
EY895394       <-- TGCATCCAGATACCTTGGCTTAAGAACAGTGATGCAATTAGTCGGTCCAA
EY919277       <-- TGCATCCAGATACCTTGGCTTAAGAACAGTGATGCAATTAGTCGGTCCAA
FD531000       <-- TGCATCCAGATACCTTGGCTTAAGAACAGTGATGCAATTAGTCGGTCCAA
EY899679       --> ..................................................
EV549029       --> ..................................................
EY901222       --> ..................................................
FD535312       --> ..................................................
EX762185       --> ..................................................
EY923484       --> TGCATCCAGATACCTTGGCTTAAGAACAGTGATGCAATTAGTCG-TCCAA

               1001   -   1051
UN18491        --> TGATGTGGGGGACGTTACTAGCTGATTTGGTTATTCAGATGCTTGAAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- TGATGTGGGGGACGTTACTAGCTGATTTGGTTATTCAGATGCTTGAAACT  Raphanus raphanistrum subsp. maritimus
EX766511       <-- TGATGTGGGGGACGTTACCAGCTGATTTGGTTATTCAGATGCTTGAAACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920424       <-- TGATGTGGGGGACCTTACTAGCTGATTTGGTTATTCAGATGCTTGAAACT  Raphanus raphanistrum subsp. landra
EV544592       <-- TGATGTGGGGGACGTTACTAGCTGATTTGGTTATTCAGATGCTTGAAACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895394       <-- TGATGTGGGGGACGTTACTAGCTGATTTGGTTATTCAGATGCTTGAAACT  Raphanus raphanistrum subsp. maritimus
EY919277       <-- TGATGTGGGGGACCTTACTAGCTGATTTGGTTATTCAGATGCTTGAAACT  Raphanus raphanistrum subsp. landra
FD531000       <-- TGATGTGGGGGACGTTACTAGCTGATTTGGTTATTCAGATGCTTGAAACT  Raphanus raphanistrum subsp. maritimus
EY899679       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV549029       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901222       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD535312       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX762185       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY923484       --> TGATGTGGGGGACCTTACTAGCTGATTTGGTTATTCAGATGCTTGAA-CT  Raphanus raphanistrum subsp. landra

               1051   -   1101
UN18491        --> GACTACGCTAGAATCTTACGAGCAATTTACGCGTTTGCACAGATTCGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- GACTACGCTAGAATCTTACGAGCAATTTACGCGTTTGCACAGATTCGAAT  Raphanus raphanistrum subsp. maritimus
EX766511       <-- GACTACGCTAGAATCTTACGAGCAATTTACGCGTTTGCACAGATTCGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920424       <-- GACTACGCTAGAATCTTACGAGCAATCTACGCGTTTGCACAGATTCGAAT  Raphanus raphanistrum subsp. landra
EV544592       <-- GACTACGCTAGAATCTTACGAGCAATTTACGCGTTTGCACAGATTCGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895394       <-- GACTACGCTAGAATCTTACGAGCAATTTACGCGCTTGCACAGATTCGAAT  Raphanus raphanistrum subsp. maritimus
EY919277       <-- GACTACGCTAGAATCTTACGAGCAATCTACGCGTTTGCACAGATTCGAAT  Raphanus raphanistrum subsp. landra
FD531000       <-- GACTACGCTAGAATCTTACGAGCAATTTACGCGTTTGCACAGATTCGAAT  Raphanus raphanistrum subsp. maritimus
EY899679       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV549029       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901222       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD535312       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX762185       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY923484       --> GACTACGCTAGAATCTTACGAGCAATCTACGCGTTTGCACAGAT......  Raphanus raphanistrum subsp. landra

               1101   -   1151
UN18491        --> CACAAAGACATACAGGCTACCTTGTAAATGAAGTTAAAGTTATTTTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- CACAAAGACATACAGGCTACCTTGTAAATGAAGTTAAAGTTATTTTCTCT
EX766511       <-- CACAAAGACATACAGGCTACCTTATAAATGAAGTTAAAGTTATTTTCTCT
EY920424       <-- CACAAGGACATACAGGCTACCTTGTAAATGAAGTTAAAGTTATTTTCTCT
EV544592       <-- CACAAAGACATACAGGCCCCCTTGTAAATGAAGTTAAAGTTATTTTCTCT
EY895394       <-- CACAAAGACATACAGGCTACCTTGTAAATGAAGTTAAAGTTATTTTCTCT
EY919277       <-- CACAAGGACATACAGGCTACCTTGTAAATGAAGTTAAAGTTATTTTCTCT
FD531000       <-- CACAAAGACATACAGGCTACCTTGTAAATGAAGTTAAAGTTATTTTCTCT
EY899679       --> ..................................................
EV549029       --> ..................................................
EY901222       --> ..................................................
FD535312       --> ..................................................
EX762185       --> ..................................................
EY923484       --> ..................................................

               1151   -   1201
UN18491        --> CGACTCTGTGTCTCCACTGTCTCTACGTATTATGTAGGTAACAATGTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- CGACTCTGTGTCTCCACTGTCTCTACGTATTATGTAGGTAACAATGTTTA
EX766511       <-- CGACTCTGTGTCTCCACTGTCTCTACGTATTATGTAGGTAACAATGTTTA
EY920424       <-- CGACTCTGTGTCTCCACTGTCTCTACGTATTATGTAGGTAACAATGTTTA
EV544592       <-- CGACTCTGTGTCTCCACTGTCTCTACGTATTATGTAGGTAACAATGTTTA
EY895394       <-- CGACTCTGTGTCTCCACTGTCTCTACGTATTATGTAGGTAACAATGTTTA
EY919277       <-- CGACTCTGTGTCTCCACTGTCTCTACGTATTATGTAGGTAACAATGTTTA
FD531000       <-- CGACTCTGTGTCTCCACTGTCTCTACGTATTATGTAGGTAACAATGTTTA
EY899679       --> ..................................................
EV549029       --> ..................................................
EY901222       --> ..................................................
FD535312       --> ..................................................
EX762185       --> ..................................................
EY923484       --> ..................................................

               1201   -   1251
UN18491        --> ATTATCACTCGCCATATGTGGTTCATGTGAAATTAGATGTTACTTCTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- ATTATCACTCGCCATATGTGGTTCATGTGAAATTAGATGTTACTTCTCGA
EX766511       <-- ATTATCACTCGCCATATGCGGTTCATGTGAAATTAGATGTTACTTCTCGA
EY920424       <-- ATTATCACTCGCCATATGTGGTTCATGTGAAATTAGATGTTACTTCTCGA
EV544592       <-- ATTATCACTCGCCATATGTGGTTCATGcg.....................
EY895394       <-- ATT...............................................
EY919277       <-- ATTATCACTCGCCATATGTGGTTCATGTGAAATTAGATGTTACTTCTCGA
FD531000       <-- ATTATCACTCGCCATATGTGGTTCATGTGAAATTAGATGTTACTTCTCGA
EY899679       --> ..................................................
EV549029       --> ..................................................
EY901222       --> ..................................................
FD535312       --> ..................................................
EX762185       --> ..................................................
EY923484       --> ..................................................

               1251   -   1301
UN18491        --> ATGGTAAAAGAGCGCCATGGCTAAACGAGCGAGTTTAGCTTCTTTCGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- ATGGTAAAAGAGCGCCATGGCTAAACGAGCGAGTTTAGCTTCTTTCG...
EX766511       <-- ATGG..............................................
EY920424       <-- ATGGTAAAAGAGCGCCATGGCTAAACGAGCGAGTTTAGCTTCTTTCGAAC
EV544592       <-- ..................................................
EY895394       <-- ..................................................
EY919277       <-- ATGGTAAAAGAGCGCCATGGCTAAACGAGCGAGTTTAGCTTCTTTCGAAC
FD531000       <-- ATGGTAAAAGAGCGCCATGGCTAAACGAGCGAGTTTAGCTTCTTTCGAAC
EY899679       --> ..................................................
EV549029       --> ..................................................
EY901222       --> ..................................................
FD535312       --> ..................................................
EX762185       --> ..................................................
EY923484       --> ..................................................

               1301   -   1351
UN18491        --> GAGCAATTACTATCACGTGTGAATCAAGAAACTTCTTGATTCATACAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896583       <-- ..................................................
EX766511       <-- ..................................................
EY920424       <-- G.................................................
EV544592       <-- ..................................................
EY895394       <-- ..................................................
EY919277       <-- G.................................................
FD531000       <-- GAGCAATTACTATCACGTGTGAATCAAGAAACTTCTTGATTCATACAAAA
EY899679       --> ..................................................
EV549029       --> ..................................................
EY901222       --> ..................................................
FD535312       --> ..................................................
EX762185       --> ..................................................
EY923484       --> ..................................................

               1351   -   1401
UN18491        --> AGAATAATGTATTTTGCG
                   ~~~~~~~~~~~~~~~~~~
EY896583       <-- ..................
EX766511       <-- ..................
EY920424       <-- ..................
EV544592       <-- ..................
EY895394       <-- ..................
EY919277       <-- ..................
FD531000       <-- AGAATAATGTATTTTGCG
EY899679       --> ..................
EV549029       --> ..................
EY901222       --> ..................
FD535312       --> ..................
EX762185       --> ..................
EY923484       --> ..................