Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN18652

               1      -     51
UN18652        --> CTTCCAACTTCGATTATTGCAGTCTTCGACTTCCATTTACCTTTCTCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938321       --> CTTCCAACTTCGATTATTGCAGTCTTCGACTTCCATTTACCTTTCTCACT
FD948429       --> CTTCCAACTTCGATTATTGCAGTCTTCGACTTCCATTTACCTTTCTCACT
FD987109       --> CTTCCAACTTCGATTATTGCAGTCTTCGACTTCCATTTACCTTTCTCACT
FY453892       --> ...................CAGTCTTCGACTT-TATTTACCTTTCTC-CT
FY439850       --> ......................TCTTCGACTTC-ATTTACCTTTCTCACT
FY452362       --> ............................ACTTCCATTTACCTTTCTCACT
FY437669       --> ........................................CTTTCTCACT

               51     -    101
UN18652        --> CCATCAGCTCCTTCGTCTTCTCTATCTCTCTCTCGAGAGAGATTCACGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938321       --> CCATCAGCTCCTTCGTCTTCTCTATCTCTCTCTCGAGAGAGATTCACGTA
FD948429       --> CCATCAGCTCCTTCGTCTTCTCTATCTCTCTCTCGAGAGAGATTCACGTA
FD987109       --> CCATCAGCTCCTTCGTCTTCTCTATCTCTCTCTCGAGAGAGATTCACGTA
FY453892       --> CCATCAGCTCCTTCGTCTTCTCTATCTCTCTCTCGAGAGAGATTCACGTA
FY439850       --> CCATCAGCTCCTTCGTCTTCTCTATCTCTCTCTCGAGAGAGATTCACGTA
FY452362       --> CCATCAGCTCCTTCGTCTTCTCTATCTCTCTCTCGAGAGAGATTCACGTA
FY437669       --> CCATCAGCTCCTTCGTCTTCTCTATCTCTCTCTCGAGAGAGATTCACGTA

               101    -    151
UN18652        --> ACACAAAAGATTTGTGTAAACCTCTCCATTGAAAAGATAATGGCGAAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938321       --> ACACAAAAGATTTGTGTAAACCTCTCCATTGAAAAGATAATGGCGAAAAC
FD948429       --> ACACAAAAGATTTGTGTAAACCTCTCCATTGAAAAGATAATGGCGAAAAC
FD987109       --> ACACAAAAGATTTGTGTAAACCTCTCCATTGAAAAGATAATGGCGAAAAC
FY453892       --> ACACAAAAGATTTGTGTAAACCTCTCCATTGAAAAGATAATGGCGAAAAC
FY439850       --> ACACAAAAGATTTGTGTAAACCTCTCCATTGAAAAGATAATGGCGAAAAC
FY452362       --> ACACAAAAGATTTGTGTAAACCTCTCCATTGAAAAGATAATGGCGAAAAC
FY437669       --> ACACAAAAGATTTGTGTAAACCTCTCCATTGAAAAGATAATGGCGAAAAC

               151    -    201
UN18652        --> CAACGGAGTTGTTATTATCCCGACGATAGACTTGGGGGAGGTTTCAGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938321       --> CAACGGAGTTGTTATTATCCCGACGATAGACTTGGGGGAGGTTTCAGACA
FD948429       --> CAACGGAGTTGTTATTATCCCGACGATAGACTTGGGGGAGGTTTCAGACA
FD987109       --> CAACGGAGTTGTTATTATCCCGACGATAGACTTGGGGGAGGTTTCAGACA
FY453892       --> CAACGGAGTTGTTATTATCCCGACGATAGACTTGGGGGAGGTTTCAGACA
FY439850       --> CAACGGAGTTGTTATTATCCCGACGATAGACTTGGGGGAGGTTTCAGACA
FY452362       --> CAACGGAGTTGTTATTATCCCGACGATAGACTTGGGGGAGGTTTCAGACA
FY437669       --> CAACGGAGTTGTTATTATCCCGACGATAGACTTGGGGGAGGTTTCAGACA

               201    -    251
UN18652        --> AGATCCTGAACCAGAAAATCCGCGAAGCGAGCGAGAGATGGGGATGTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938321       --> AGATCCTGAACCAGAAAATCCGCGAAGCGAGCGAGAGATGGGGATGTTTC
FD948429       --> AGATCCTGAACCAGAAAATCCGCGAAGCGAGCGAGAGATGGGGATGTTTC
FD987109       --> AGATCCTGAACCAGAAAATCCGCGAAGCGAGCGAGAGATGGGAATGTTTC
FY453892       --> AGATCCTGAACCAGAAAATCCGCGAAGCGAGCGAGAGATGGGGATGTTTC
FY439850       --> AGATCCTGAACCAGAAAATCCGCGAAGCGAGCGAGAGATGGGGATGTTTC
FY452362       --> AGATCCTGAACCAGAAAATCCGCGAAGCGAGCGAGAGATGGGGATGTTTC
FY437669       --> AGATCCTGAACCAGAAAATCCGCGAAGCGAGCGAGAGATGGGGATGTTTC

               251    -    301
UN18652        --> AGAGCGATCAACCATGGAGTTCCACTGTCTTTGATGTCTGACATGAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938321       --> AGAGCGATCAACCATGGAGTTCCACTGTCTTTGATGTCTGACATGAAGAA
FD948429       --> AGAGCGATCAACCATGGAGTTCCACTGTCTTTGATGTCTGACATGAAGAA
FD987109       --> AGAGCGATCAACCATGGAGTTCCACTGTCTTTGATGTCTGACATGAAGAA
FY453892       --> AGAGCGATCAACCATGGAGTTCCACTGTCTTTGATGTCTGACATGAAGAA
FY439850       --> AGAGCGATCAACCATGGAGTTCCACTGTCTTTGATGTCTGACATGAAGAA
FY452362       --> AGAGCGATCAACCATGGAGTTCCACTGTCTTTGATGTCTGACATGAAGAA
FY437669       --> AGAGCGATCAACCATGGAGTTCCACTGTCTTTGATGTCTGACATGAAGAA

               301    -    351
UN18652        --> GACCGTTATTGATCTCTTCGAACGTCCGCACGAGGTGAAAGTGCGTAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938321       --> GACCGTTATTGATCTCTTCGAACGTCCGCACGAGGTGAAAGTGCGTAACA
FD948429       --> GACCGTTATTGATCTCTTCGAACGTCCGCACGAGGTGAAAGTGCGTAACA
FD987109       --> GACCGTTATTGATCTCTTCGAACGTCCGCACGAGGTGAAAGTGCGTAACA
FY453892       --> GACCGTTATTGATCTCTTCGAACGTCCGCACGAGGTGAAAGTGCGTAACA
FY439850       --> GACCGTTATTGATCTCTTCGAACGTCCGCACGAGGTGAAAGTGCGTAACA
FY452362       --> GACCGTTATTGATCTCTTCGAACGTCCGCACGAGGTGAAAGTGCGTAACA
FY437669       --> GACCGTTATTGATCTCTTCGAACGTCCGCACGAGGTGAAAGTGCGTAACA

               351    -    401
UN18652        --> CAGACGTGTTACTAGGGAGTGGTTACAGAGCTCCTAACGAGATCAATCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938321       --> CAGACGTGTTACTAGGGAGTGGTTACAGAGCTCCTAACGAGATCAATCCT
FD948429       --> CAGACGTGTTACTAGGGAGTGGTTACAGAGCTCCTAACGAGATCAATCCT
FD987109       --> CAGACGTGTTACTAGGGAGTGGTTACAGGGCTCCTAACGAAATTAATCCT
FY453892       --> CAGACGTGTTACTAGGGAGTGGTTACAGAGCTCCTAACGAGATCAATCCT
FY439850       --> CAGACGTGTTACTAGGGAGTGGTTACAGAGCTCCTAACGAGATCAATCCT
FY452362       --> CAGACGTGTTACTAGGGAGTGGTTACAGAGCTCCTAACGAGATCAATCCT
FY437669       --> CAGACGTGTTACTAGGGAGTGGTTACAGAGCTCCTAACGAGATCAATCCT

               401    -    451
UN18652        --> TATTACGAAGCGTTGGGTCTCTACGACATGGCTTCTCCTCAAGCAGTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938321       --> TATTACGAAGCGTTGGGTCTCTACGACATGGCTTCTCCTCAAGCAGTTAA
FD948429       --> TATTACGAAGCGTTGGGTCTCTACGACATGGCTTCTCCTCAAGCAGTTAA
FD987109       --> TATTACGAAGCGTTGGGTCTCTACGACATGGCTTCTCCTCGAGCAGTCAA
FY453892       --> TATTACGAAGCGTTGGGTCTCTACGACATGGCTTCTCCTCAAGCAGTTAA
FY439850       --> TATTACGAAGCGTTGGGTCTCTACGACATGGCTTCTCCTCAAGCAGTTAA
FY452362       --> TATTACGAAGCGTTGGGTCTCTACGACATGGCTTCTCCTCAAGCAGTTAA
FY437669       --> TATTACGAAGCGTTGGGTCTCTACGACATGGCTTCTCCTCAAGCAGTTAA

               451    -    501
UN18652        --> CACTTTTTGTGACCAGCTCGAGGCTTCTGCGGATCAAAGGGACATAATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938321       --> CACTTTTTGTGACCAGCTCGAGGCTTCTGCGGATCAAAGGGACATAATGG
FD948429       --> CACTTTTTGTGACCAGCTCGAGGCTTCTGCGGATCAAAGGGACATAATGG
FD987109       --> CACGTTTTGTGACCAGCTCGAGGCTTCTGTGGATCAAAGGGACATAATGG
FY453892       --> CACTTTTTGTGACCAGCTCGAGGCTTCTGCGGATCAAAGGGACATAATGG
FY439850       --> CACTTTTTGTGACCAGCTCGAGGCTTCTGCGGATCAAAGGGACATAATGG
FY452362       --> CACTTTTTGTGACCAGCTCGAGGCTTCTGCGGATCAAAGGGACATAATGG
FY437669       --> CACTTTTTGTGACCAGCTCGAGGCTTCTGCGGATCAAAGGGACATAATGG

               501    -    551
UN18652        --> TAAAATATGCGAAAGCTATCGATGGACTTGCAAAGGATCTAGCAAGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938321       --> TAAAATATGCGAAAGCTATCGATGGACTTGCAAAGGATCTAGCAAGGAGA
FD948429       --> TAAAATATGCGAAAGCTATCGATGGGCTTGCAAAGGATCTAGCAAGGAGA
FD987109       --> TAAAATATGCGAAAGCTATCGATGGACTTGCAAAGGATTTAGCAAGGAGG
FY453892       --> TAAAATATGCGAAAGCTATCGATGGACTTGCAAAGGATCTAGCAAGGAGA
FY439850       --> TAAAATATGCGAAAGCTATCGATGGACTTGCAAAGGATCTAGCAAGGAGA
FY452362       --> TAAAATATGCGAAAGCTATCGATGGACTTGCAAAGGATCTAGCAAGGAGA
FY437669       --> TAAAATATGCGAAAGCTATCGATGGACTTGCAAAGGATCTAGCAAGGAGA

               551    -    601
UN18652        --> TTAGCCGAGAGCTACGGCTTAGCTGATACAAACTTCTTCGAAGGATGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938321       --> TTAGCCGAGAGCTACGGCTTAGCTGATACAAACTTCTTCGAAG-ATGGCC
FD948429       --> TTAGCCGAGAGCTACGGCTTAGCTGATACAAACTTCTTCGAAGGATGGCC
FD987109       --> TTAGCAGAGAGCTACGGCTTAGCCGAGACCAACTTCTTCGAAGGGTGGCC
FY453892       --> TTAGCCGAGAGCTACGGCTTAGCTGATACAAACTTCTTCGAAGGATGGCC
FY439850       --> TTAGCCGAGAGCTACGGCTTAGCTGATACAAACTTCTTCGAAGGATGGCC
FY452362       --> TTAGCCGAGAGCTACGGCTTAGCTGATACAAACTTCTTCGAAGGATGGCC
FY437669       --> TTAGCCGAGAGCTACGGCTTAGCTGATACAAACTTCTTCGAAGGATGGCC

               601    -    651
UN18652        --> GAGCCAGTTCCGGATCAACAAGTATCATTTCCAACCAGAAACGGTCGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938321       --> GAGCCAGTTCCCGATCAACAAGTATCATTTCCAACCAGAAGCGGTCGGGA
FD948429       --> GAGCCAGTTCCGGATCAACAAGTATCATTTCCAACCAGAAACGGTCGGGA
FD987109       --> GAGCCAGTTCCCGATCAACAAGTATCATTTCCAACCAGAAACGGTCGGGA
FY453892       --> GAGCCAGTTCCGGATCAACAAGTATCATTTCCAACCAGAAACGGTCGGGA
FY439850       --> GAGCCAGTTCCGGATCAACAAGTATCATTTCCAACCAGAAACGGTCGGGA
FY452362       --> GAGCCAGTTCCGGATCAACAAGTATCATTTCCAACCAGAAACGGTCGGGA
FY437669       --> GAGCCAGTTCCGGATCAACAAGTATCATTTCCAACCAGAAACGGTCGGGA

               651    -    701
UN18652        --> AACTCGGTGTCCAGTTACACACCGATTCAGGCTTCTTGACGATTCTTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938321       --> AACTCGGTGTCCAGTTACACACCGATTCAG-CTTCTTGACGAT-CTTCA-  Raphanus sativus cv Early Scarlet Globe
FD948429       --> AACTCGGTGTCCAGTTACACACCGATTCAG-CTTCTTGACGATTCTTCAt  Raphanus sativus cv Early Scarlet Globe
FD987109       --> AACTCGGTGTCCAGTTACACACCGATTCAG-CTTCTTGACGATTCTTCA-  Raphanus raphanistrum subsp. landra
FY453892       --> AACTCGGTGTCCAGTTACACACCGATTCAGGCTTCTTGACGATTCTTCAA  Raphanus sativus cv GSK3-1
FY439850       --> AACTCGGTGTCCAGTTACACACCGATTCAGGCTTCTTGACGATTCTTCAA  Raphanus sativus cv GSK3-1
FY452362       --> AACTCGGTGTCCAGTTACACACCGATTCAGGCTTCTTGACGATTCTTCAA  Raphanus sativus cv GSK3-1
FY437669       --> AACTCGGTGTCCAGTTACACACCGATTCAGGCTTCTTGACGATTCTTCAA  Raphanus sativus cv GSK3-1

               701    -    751
UN18652        --> GACGACGAAAACGTCGGTGGGCTCGAAGCTATGGACCATTCTTCGGGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938321       --> GACGACTAAAACGTCG-TGGGCTCGAAGCTATGGAC-AT-CT-CGG--AC
FD948429       --> acgac.............................................
FD987109       --> GACGACGAAAA.......................................
FY453892       --> GACGACGAA.........................................
FY439850       --> GACGACGAAAACGTCGGTGGGCTCGAAGCTATGGACCATTCTTCGGGAAC
FY452362       --> GACGACGAA.........................................
FY437669       --> GACGACGAAAACGTCGGTGGGCTCGAAGCTATGGACCATTCTTCGGGAAC

               751    -    801
UN18652        --> GTTTTTTCCCATTAGCCCGTTGCCGAACACTTTGGCTATCAACCTCGGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938321       --> GTTTTT-CCCATTAGCC-GTTGCgaca.......................
FD948429       --> ..................................................
FD987109       --> ..................................................
FY453892       --> ..................................................
FY439850       --> GTTTTTTCCCATTAGCCCGTTGCCGAACACTTTGGCTATCAACCTCGGCG
FY452362       --> ..................................................
FY437669       --> GTTTTTTCCCATTAGCCCGTTGCCGAACACTTTGGCTATCAACCTCGGCG

               801    -    851
UN18652        --> ACATGGCTACGATATGGAGCAATGGGAGATTGTGCAACGTGAAGCACAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938321       --> ..................................................
FD948429       --> ..................................................
FD987109       --> ..................................................
FY453892       --> ..................................................
FY439850       --> ACATGGCTACGATATGGAGCAATGGGAGATTGTGCAACGTGAAGCACAGA
FY452362       --> ..................................................
FY437669       --> ACATGGCTACGATATGGAGCAATGGGAGATTGTGCAACGTGAAGCACAGA

               851    -    901
UN18652        --> GTGCAATGGCACGAAGCGACGAAGAGGTTTTCTATCGCTTCTTTTTTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938321       --> ..................................................
FD948429       --> ..................................................
FD987109       --> ..................................................
FY453892       --> ..................................................
FY439850       --> GTGCAATGGCACGAAGCGACGAAGAGGTTTTCTATCGCTTCTTTTTTTGT
FY452362       --> ..................................................
FY437669       --> GTGCAATGGCACGAAGCGACGAAGAAGTTTTCTATCGCT...........

               901    -    951
UN18652        --> AGGACCGATTGATACAGATT
                   ~~~~~~~~~~~~~~~~~~~~
EY938321       --> ....................
FD948429       --> ....................
FD987109       --> ....................
FY453892       --> ....................
FY439850       --> AGGACCGATTGATACAGATT
FY452362       --> ....................
FY437669       --> ....................