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Alignment for radish unigene UN18681

               1      -     51
UN18681        --> GGAAACCCGCGTTAATTACGGTTTTGTCCCTACGCGCAGCTCAAAGACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- ..................................................
EX751328       <-- ..................................................
EY910927       <-- ..................................................
EX753535       <-- ..................................................
EY933259       --> GGAAACCCGCGTTAATTACGGTTTTGTCCCTACGCGCAGCTCAAAGACCT
FD979040       --> GGAAACCCGCGTTAATTACGGGTTTGTCCCTACGCGCAGCTCAAAGACCT
EW725869       --> gaAAACCCGCGTTAATTACGGTTTTGTCCCTACGCGCAGCTCAAAGACCT
EY940883       --> ..................................................
EY914994       --> ..................................................
EX749965       --> ..................................................

               51     -    101
UN18681        --> CCTCTCTCTCTCTGTTCTGTCTTTCGTCTGGTCGGATCAGTCGAAAAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- ..................................................
EX751328       <-- ..................................................
EY910927       <-- ..................................................
EX753535       <-- ..................................................
EY933259       --> CCTCTCTCTCTCTGTTCTGTCTTTCGTCTGGTCGGATCAGTCGAAAAAAG
FD979040       --> CCTCTCTCTCTCTGTTCTGTCTTTCGTCTGGTCGGATCAGTCGAAAAAAG
EW725869       --> CCTCTCTCTCTCTGTTCTGTCTTTCGTCTGGTCGGATCAGTCGAAAAAAG
EY940883       --> ................ggGTCTTTCGTCTGGTCGGATCAGTCGAAAAAAG
EY914994       --> ..................................................
EX749965       --> ..................................................

               101    -    151
UN18681        --> CTTGAAGAATTTGATACTTTTGATTTCTAA-GTCCATGGAATCTGCTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- ..................................................
EX751328       <-- ..................................................
EY910927       <-- ..................................................
EX753535       <-- ..................................................
EY933259       --> CTTGAAGAATTTGATACTTTTGATTTCTAA-GTCCATGGAATCTGCTAAA
FD979040       --> CTTGAAGAATTTGATACTTTTGATTTCTAA-GTCCATGGAATCTGCAAAA
EW725869       --> CTTGAAGAATTTGATACTTTTGATTTCTAAAATCCATGGAATCTGCAAAA
EY940883       --> CTTGAAGAATTTGATACTTTTGATTTCTAA-GTCCACGGAATCTGCTAAA
EY914994       --> ..................................................
EX749965       --> ..................................................

               151    -    201
UN18681        --> GAGCGTGATACTTTCGTCTACCTCGCAAAGCTATCTGAACAAGCTGAGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- ..................................................
EX751328       <-- ..................................................
EY910927       <-- ..................................................
EX753535       <-- ..................................................
EY933259       --> GAGCGTGACACTTTCGTCTACCTCGCAAAGCTATCTGAACAAGCTGAGCG
FD979040       --> GAGCGTGATACCTTCGTCTACCTCGCAAAGCTATCTGAACAAGCTGAGCG
EW725869       --> GAGCGTGATACTTTCGTCTACCTCGCAAAGCTATCTGAACAAGCTGAGCG
EY940883       --> GAGCGTGACACTTTCGTCTACCTCGCAAAGCTATCTGAACAAGCTGAGCG
EY914994       --> ..................................................
EX749965       --> ..................................................

               201    -    251
UN18681        --> CTATGAAGAGATGGTGGAGTCGATGAAGAACCTCGCGAAGTTGAACGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- ..................................................
EX751328       <-- ..................................................
EY910927       <-- ..................................................
EX753535       <-- ..................................................
EY933259       --> CTATGAAGAGATGGTGGAGTCGATGAAGAACCTCGCGAAGTTGAACGTTG
FD979040       --> CTATGAAGAAATGGTGGAGTCGATGAAGAACCTTGCGAAGTTGAACGTTG
EW725869       --> CTATGAAGAGATGGTGGAGTCGATGAAGAACCTCGCGAAGTTGAACGTTG
EY940883       --> CTATGAAGAGATGGTGGAGTCGATGAAGAACCTCGCAAAGTTGAACGTTG
EY914994       --> ..................................................
EX749965       --> ..................................................

               251    -    301
UN18681        --> ATCTGACGTTGGAAGAGAGGAACTTGCTCTCTGTTGGATACAAGAACGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- ..............................................CGTG
EX751328       <-- ..................................................
EY910927       <-- ..................................................
EX753535       <-- ..................................................
EY933259       --> ATCTGACGTTGGAAGAGAGGAACTTGCTCTCTGTTGGATACAAGAACGTG
FD979040       --> ATCTGACGTTGGAAGAGAGGAACTTGCTCTCTGTTGGATACAAGAACGTG
EW725869       --> ATCTGACGTTGGAAGAGAGGAACTTGCTCTCTGTTGGATACAAGAACGTG
EY940883       --> ATCTGACGTTAGAAGAGAGGAACTTGCTCTCTGTTGGATACAAGAACGTG
EY914994       --> ..................................................
EX749965       --> ..................................................

               301    -    351
UN18681        --> ATCGGTTCAAGGAGAGCTTCGTGGAGGATCTTCTCGTCGATCGAGCAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- ATCGGTTCAAGGAGAGCTTCGTGGAGGATCTTCTCGTCGATCGAGCAGAA
EX751328       <-- ..................................................
EY910927       <-- ..................................................
EX753535       <-- ..................................................
EY933259       --> ATCGGTTCAAGGAGAGCTTCGTGGAGGATCTTCTCGTCGATCGAGCAGAA
FD979040       --> ATCGGTTCAAGGAGAGCTTCGTGGAGGATCTTCTCGTCGATCGAGCAGAA
EW725869       --> ATCGGTTCAAGGAGAGCTTCGTGGAGGATCTTCTCGTCGATCGAGCAGAA
EY940883       --> ATCGGTTCAAGGAGAGCTTCGTGGAGGATCTTCTCGTCGATCGAGCAGAA
EY914994       --> ..................................................
EX749965       --> ..................................................

               351    -    401
UN18681        --> AGAAGCAGTGAAAGGGAACGATGTTAATGTAAAGAGGATCAAAGATTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- AGAAGCAGTGAAAGGGAACGATGTTAATGTAAAGAGGATCAAAGATTATA
EX751328       <-- ..................................................
EY910927       <-- ..................................................
EX753535       <-- ..................................................
EY933259       --> AGAAGCAGTGAAAGGGAACGATGTTAATGTAAAGAGAATCAAAGATTATA
FD979040       --> AGAAGCAGTGAAAGGGAACGATGTTAATGTAAAGAGGATCAAAGATTATA
EW725869       --> AGA...............................................
EY940883       --> AGAAGCAGTGAAAGGGAACGATGTTAATGTAAAGAGGATCAAAGATTATA
EY914994       --> ..................................................
EX749965       --> ..................................................

               401    -    451
UN18681        --> TGGAGAAGGTTGAGTTAGAGCTCACAAGTATATGCATTGACATAATGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- TGGAGAAGGTTGAGTTAGAGCTCACAAGTATATGCATTGACATAATGTCT
EX751328       <-- ..................................................
EY910927       <-- ..................................................
EX753535       <-- ..................................................
EY933259       --> TGGAGAAGGTTGAGTTAGAGCTCACAAGTATATGCATTGACATAATGTCT
FD979040       --> TGGAGAAGGTTGAGTTAGAGCTCACAAGTATATGCATTGACATAATGTCT
EW725869       --> ..................................................
EY940883       --> CGGAGAAGGTTGAGTTAGAGCTCACAAGTATATGCATTGACATAATGTCC
EY914994       --> ..................................................
EX749965       --> ..................................................

               451    -    501
UN18681        --> GTGTTAGATGAGCATCTGATCCCATCTGCTTCCGAGGGTGAATCAACTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- GTGTTAGATGAGCATCTGATCCCATCTGCTTCCGAGGGTGAATCAACTGT
EX751328       <-- .........................CTGCTTCCGAGGGTGAATCAACTGT
EY910927       <-- ..................................................
EX753535       <-- ..................................................
EY933259       --> GTGTTAGATGAGCATCTGATCCCATCTGCTTCCGAGGGTGAATCAACTGT
FD979040       --> GTGTTAGATGAGCATCTGATCCCATCTGCTTCCGAGGGTGAATCAACCGT
EW725869       --> ..................................................
EY940883       --> GTGTTAGATGAGCATCTGATCCCATCTGCTTCCGAGGGTGAATCAACTGT
EY914994       --> ..................................................
EX749965       --> ..................................................

               501    -    551
UN18681        --> CTTCTTCAACAAGATGAAAGGTGATTATTACCGCTATCTTGCTGAGTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- CTTCTTCAACAAGATGAAAGGTGATTATTACCGCTATCTTGCTGAGTTTA
EX751328       <-- CTTCTTCAACAAGATGAAAGGTGATTATTACCGCTATCTTGCTGAGTTTA
EY910927       <-- .........gAAGATGAAAGGTGATTATTACCGCTATCCTGCTGAGTTTA
EX753535       <-- ..................................................
EY933259       --> CTTCTTCAACAAGATGAAAGGTGATTATTACCGCTATCTTGCTGAGTTTA
FD979040       --> CTTCTTCAACAAAATGAAAGGTGATTATTACCGCTATCTTGCTGAGTTTA
EW725869       --> ..................................................
EY940883       --> CTTCTTCAACAAGATGAAAGGTGATTATTACCGCTATCTTGCTGAGTTTA
EY914994       --> .........gAAGATGAAAGGTGATTATTACCGCTATCCTGCTGAGTTTA
EX749965       --> ..................................................

               551    -    601
UN18681        --> AATCAGGAGATGAGAGGAAAGAGGCTGCTGATCAGTCTTTGAAAGCCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- AATCAGGAGATGAGAGGAAAGAGGCTGCTGATCAGTCTTTGAAAGCCTAT
EX751328       <-- AATCAGGAGATGAGAGGAAAGAGGCTGCTGATCAGTCTTTGAAAGCCTAT
EY910927       <-- AATCAGGAGATGAGAGGAAAGAGGCTGCTGATCAGTCTTTGAAAGCCTAT
EX753535       <-- .....................gGGCTGCTGATCAGTCTTTGAAAGCCTAT
EY933259       --> ..................................................
FD979040       --> AATCAGGGGATGAGAGGAAAGAGGCTGATGATCAGTCTTTGAAAGCCTAT
EW725869       --> ..................................................
EY940883       --> AATCAGGAGATGAGAGGAAAGAGGCTGCTGATCAGTCTTTGAAAGCCTAT
EY914994       --> AATCAGGAGATGAGAGGAAAGAGGCTGCTGATCAGTCTTTGAAAGCCTAT
EX749965       --> .....................gGGCTGCTGATCAGTCTTTGAAAGCCTAT

               601    -    651
UN18681        --> GAGATTGCTACTACTTCTGCTGAGGCTAAACTTCCTCCTACACATCCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- GAGATTGCTACTACTTCTGCTGAGGCTAAACTTCCTCCTACACATCCAAT
EX751328       <-- GAGATTGCTACTACTTCTGCTGAGGCTAAACTTCCTCCTACACATCCAAT
EY910927       <-- GAGATTGCTACTACTTCTGCTGAGGCTAAACTTCCTCCTACACATCCAAT
EX753535       <-- GAGATTGCTACTACTTCTGCTGAGGCTAAACTTCCTCCTACACATCCAAT
EY933259       --> ..................................................
FD979040       --> GAGATTGCTACTACTTCTGCTGAG-CTAAACTTCCTCCTACACATCCAAT
EW725869       --> ..................................................
EY940883       --> GAGATTGCTACTACTTCTGCTGAGGCTAAACTTCCTCCTACACATCCTAT
EY914994       --> GAGATTGCTACTACTTCTGCTGAGGCTAAACTTCCTCCTACACATCCAAT
EX749965       --> GAGATTGCTACTACTTCTGCTGAGGCTAAACTTCCTCCTACACATCCAAT

               651    -    701
UN18681        --> CAGATTGGGATTGGCTTTGAATTTCTCTGTCTTCTACTATGAGATCATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- CAGATTGGGATTGGCTTTGAATTTCTCTGTCTTCTACTATGAGATCATGA
EX751328       <-- CAGATTGGGATTGGCTTTGAATTTCTCTGTCTTCTACTATGAGATCATGA
EY910927       <-- CAGATTGGGATTGGCTTTGAATTTCTCTGTCTTCTACTATGAGATCATGA
EX753535       <-- CAGATTGGGATTGGCTTTGAATTTCTCTGTCTTCTACTATGAGATCATGA
EY933259       --> ..................................................
FD979040       --> CAGATTGGGATTGGCTTTGAATTTCTCTGTCT-CTACTATGAGATCATGA
EW725869       --> ..................................................
EY940883       --> CAGATTGGGATTGGCTTTGAATTTCTCTGTCTTCTACTATGAGATCATGA
EY914994       --> CAGATTGGGATTGGCTTTGAATTTCTCTGTCTTCTACTATGAGATCATGA
EX749965       --> CAGATTGGGATTGGCTTTGAATTTCTCTGTCTTCTACTATGAGATCATGA

               701    -    751
UN18681        --> ACTCACCTGAAAGGGCATGTGAGCTTGCTAAGCAGGCGTTTGATGAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- ACTCACCTGAAAGGGCATGTGAGCTTGCTAAGCAGGCGTTTGATGAAGCA
EX751328       <-- ACTCACCTGAAAGGGCATGTGAGCTTGCTAAGCAGGCGTTTGATGAAGCA
EY910927       <-- ACTCACCTGAAAGGGCATGTGAGCTTGCTAAGCAGGCGTTTGATGAAGCA
EX753535       <-- ACTCACCTGAAAGGGCATGTGAGCTTGCTAAGCAGGCGTTTGATGAAGCA
EY933259       --> ..................................................
FD979040       --> -CTCAC-TGAAAGG-CATGTGAGCTTGCTAA...................
EW725869       --> ..................................................
EY940883       --> ACTCACCTGTAAGGGCATGTGAGCTTGCTAAGCACGCGTTTGATGAAGCA
EY914994       --> ACTCACCTGAAAGGGCATGTGAGCTTGCTAAGCAGGCGTTTGATGAAGCA
EX749965       --> ACTCACCTGAAAGGGCATGTGAGCTTGCTAAGCAGGCGTTTGATGAAGCA

               751    -    801
UN18681        --> ATCTCAGAACTTGACAGTCTGAATGAGGAATCTTACAAAGATAGCACTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- ATCTCAGAACTTGACAGTCTGAATGAGGAATCTTACAAAGATAGCACTTT
EX751328       <-- ATCTCAGAACTTGACAGTCTGAATGAGGAATCTTACAAAGATAGCACTTT
EY910927       <-- ATCTCAGAACTTGACAGTCTGAATGAGGAATCTTACAAAGATAGCACTTT
EX753535       <-- ATCTCAGAACTTGACAGTCTGAATGAGGAATCTTACAAAGATAGCACTTT
EY933259       --> ..................................................
FD979040       --> ..................................................
EW725869       --> ..................................................
EY940883       --> ATCTCAGAACTTGACAGTCTGAATGGGGAATCTTACAAAGATAGCACTTT
EY914994       --> ATCTCAGAACTTGACAGTCTGAATGAGGAATCTTACAAAGATAGCACTTT
EX749965       --> ATCTCAGAACTTGACAGTCTGAATGAGGAATCTTACAAAGATAGCACTTT

               801    -    851
UN18681        --> GATTTTGCAACTCCTTAGGGACAATTTGACCTTGTGGACTTCTGACATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- GATTTTGCAACTCCTTAGGGACAATTTGACCTTGTGGACTTCTGACATCC
EX751328       <-- GATTTTGCAACTCCTTAGGGACAATTTGACCTTGTGGACTTCTGACATCC
EY910927       <-- GATTTTGCAACTCCTTAGGGACAATTTGACCTTGTGGACTTCCGACATCC
EX753535       <-- GATTTTGCAACTCCTTAGGGACAATTTGACCTTGTGGACTTCTGACATCC
EY933259       --> ..................................................
FD979040       --> ..................................................
EW725869       --> ..................................................
EY940883       --> GATTTTGCA-CTCCTTAGG-AC-ATCTGACCTTGTGGACTTCTGA.....
EY914994       --> GATTTTGCAACTCCTTAGGGACAATTTGACCTTGTGGACTTCCGACATCC
EX749965       --> GATTTTGCAACTCCTTAGGGACAATTTGACCTTGTGGACTTCTGACATCC

               851    -    901
UN18681        --> CTGAAGAAGGAG-AGATGATGCACATAAGACGAATGGTTCTGCTAAACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- CTGAAGAAGGAGTAGATGATGCACATAAGACGAATGGTTCTGCTAAACAC
EX751328       <-- CTGAAGAAGGAG---ATGATGCACATAAGACGAATGGTTCTGCTAAACAC
EY910927       <-- CTGAAGAAGGAG---ATGATGCACATAAGACGAATGGTTCTGCTAAACAC
EX753535       <-- CTGAAGAAGGAG---ATGATGCACATAAGACGAATGGTTCTGCTAAACAC
EY933259       --> ..................................................
FD979040       --> ..................................................
EW725869       --> ..................................................
EY940883       --> ..................................................
EY914994       --> CTGAAGAAGGAG-A--TGATGCACATAAGACGAATGGTTCTGCTAAACAC
EX749965       --> CTGAAGAAGGAG-A--TGATGCACATAAGACGAATGGTTCTGCTAAACAC

               901    -    951
UN18681        --> GGTGCAGGTGAAGACGACGCAGAGTGATCTGATGATATGTGTGCACCCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- GGTGCAGGTGAAGACGACGCAGAGTGATCTGATGATATGTGTGCACCCGC
EX751328       <-- GGTGCAGGTGAAGACGACGCAGAGTGATCTGATGATATGTGTGCACCCGC
EY910927       <-- GGTGCAGGTGAAGACGACGCAGAGTGATCTGATGATATGTGTGCACCCGC
EX753535       <-- GGTGCAGGTGAAGACTACGCAGAGTGATCTGATGATATGTGTGCACCCGC
EY933259       --> ..................................................
FD979040       --> ..................................................
EW725869       --> ..................................................
EY940883       --> ..................................................
EY914994       --> GGTGCAGGTGAAGACGACGCAGAGTGATCTGATGATATGTGTGCACCCGC
EX749965       --> GGTGCAGGTGAAGACTACGCAGAGTGATCTGATGATATGTGTGCACCCGC

               951    -   1001
UN18681        --> AGCAGCAGCAGTAATGGACAAACATGTTTCAAGAACAACTGAATGTGCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- AGCAGCAGCAGTAATGGACAAACATGTTTCAAGAACAACTGAATGTGCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX751328       <-- AGCAGC---AGTAATGGACAAACATGTTTCAAGAACAACTGAATGTGCGG  Raphanus raphanistrum subsp. maritimus
EY910927       <-- AGCAGCAGCAGTAATGGACAAACATGTTTCAAGAACAACTGAATGTGCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753535       <-- AGCAGC---AGTAATGGACAAACATGTTTCAAGAACAACTGAATGTGCGG  Raphanus raphanistrum subsp. maritimus
EY933259       --> ..................................................  Raphanus sativus var. oleiformis
FD979040       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725869       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY940883       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY914994       --> AGCAGCAGCAGTAATGGACAAACATGTTTCAAGAACAACTGAATGTGCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX749965       --> AGCAGCAG---TAATGGACAAACATGTTTCAAGAACAACTGAATGTGCGG  Raphanus raphanistrum subsp. maritimus

               1001   -   1051
UN18681        --> TGAATAATAGCAAAAAACCTATAGTTCTTATGTTTCCTGTATTTTTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- TGAATAATAGCAAAAAACCTATAGTTCTTATGTTTCCTGTATTTTCCTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX751328       <-- TGAATAATAGCAAAAAACCTATAGTTCTTATGTTTCCTGTATTTTTCTCT  Raphanus raphanistrum subsp. maritimus
EY910927       <-- TGAATAATAGCAAAAAACCTATAGTTCTTATGTTTCCTGTATTTTCCTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753535       <-- TGAATAATAGCAAAAAACCTATAGTTCTTATGTTTCCTGTATTTTTCTCT  Raphanus raphanistrum subsp. maritimus
EY933259       --> ..................................................  Raphanus sativus var. oleiformis
FD979040       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725869       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY940883       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY914994       --> TGAATAATAGCAAAAAACCTATAGTTCTTATGTTTCCTGTATTTTCCTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX749965       --> TGAATAATAGCAAAAAACCTATAGTTCTTATGTTTCCTGTATTTTTCTCT  Raphanus raphanistrum subsp. maritimus

               1051   -   1101
UN18681        --> CTGGTTTGAGTGTATGTTTGTCTCTCAAGACACTCTTTTCTTTTTTGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- CTGGTTTGAGTGTATGTTTGTCTCTCAAGACACTCTTTTCTTTTTTGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX751328       <-- CTGGTTTGAGTGTATGTTTGTCTCTCAAGACACTCTTTTCTTATTTGTGA  Raphanus raphanistrum subsp. maritimus
EY910927       <-- CTGGTTTGAGTGTATGTTTGTCTCTCAAGACACTCTTTTCTTTTTTGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753535       <-- CTGGTTTGAGTGTATGTTTGTCTCTCAAGACACTCTTTTCTTATTTGTGA  Raphanus raphanistrum subsp. maritimus
EY933259       --> ..................................................  Raphanus sativus var. oleiformis
FD979040       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725869       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY940883       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY914994       --> CTGGTTTGAGTGTATGTTTGTCTCTCAAGACACTCTTTTCTTTTTTGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX749965       --> CTGGTTTGAGTGTATGTTTGTCTCTCAAGACACTCTTTTCTTATTTGTGA  Raphanus raphanistrum subsp. maritimus

               1101   -   1151
UN18681        --> TTTGTATTCAGTACCCTCCTCTTCACCAATTGCTCTTCTCTCTCACTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- TTTGTATTCAGTACCCTCCTCTTCACCAATTGCTCTTCTCTCTCACTATG
EX751328       <-- TTTGTATTCAGTACCCTCCTCTTCACCAATTGCTCTTCTCTCTCACTATG
EY910927       <-- TTTGTATTCAGTACCCTCCTCTTCACCAATTGCTCTTCTCTCTCACTg..
EX753535       <-- TTTGTATTCAGTACCCTCCTCTTCACCAATTGCTCTTCTCTCTCACTATG
EY933259       --> ..................................................
FD979040       --> ..................................................
EW725869       --> ..................................................
EY940883       --> ..................................................
EY914994       --> TTTGTATTCAGTACCCTCCTCTTCACCAATTGCTCTTCTCTCTCACTg..
EX749965       --> TTTGTATTCAGTACCCTCCTCTTCACCAATTGCTCTTCTCTCTCACTATG

               1151   -   1201
UN18681        --> TATTCCTATGGATCCACTCTTATATCTCTGTTCAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546969       <-- TATTCCTATGGATCCACTCTTATATCTCTGTTCAGTT
EX751328       <-- TATTCCTATtttct.......................
EY910927       <-- .....................................
EX753535       <-- TATTCCTATtttctatggatccactcttat.......
EY933259       --> .....................................
FD979040       --> .....................................
EW725869       --> .....................................
EY940883       --> .....................................
EY914994       --> .....................................
EX749965       --> TATTCCTATtttctatggatccactcttat.......