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Alignment for radish unigene UN18698

               1      -     51
UN18698        --> CTCCTCTTGCGACTTGTGAGGAGTGAGGACTCCTTGATGGAGTTCCATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> CTCCTCTTGCGACTTGTGAGGAGTGAGGACTCCTTGATGGAGTTCCATTC
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               51     -    101
UN18698        --> TTATAAATTATGAATACATGATCTTGAATGAATAACTTGAACAAAAAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> TTATAAATTATGAATACATGATCTTGAATGAATAACTTGAACAAAAAACT
EV544868       --> .....AATTATGAATACATGATCTTGAATAAATAACTTGAACAAAAAACT
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               101    -    151
UN18698        --> GAAATGGTAAGAAAAGAGACTAATTATGAAAAAA-GTGTTTCTCTAGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- .....................gtTTATGAAAAAAAGTGTTTCTCTAGAAT
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> GAAATGGTAAGAAAAGAGACTAATTATGAAAAAA-GTGTTTCTCTAGAAT
EV544868       --> GAAATGGTAAGAAAAGAGACTAATTATGAAAAAA-GTGTTTCTCTAGAAT
EV545176       --> GAAATGGTAAGAAAAGAGACTAATTATGAAAAAA-GTGTTTCTCTAGAAT
EY920436       --> .....GGTAAGAAAAGAGACTAATTATGAAAAAA-GTGTTTCTCTAGAAT
FD960639       --> ...................CTAATTATGAAAAAA-GTGTTTCTCTAGAAT
EY911141       --> .........................gcGAAAAAA-GTGTTTCTCTAGAAT
FD537023       --> .........................ggaAAAAAA-GTGT--CTCTAGAAT
EX892702       --> ..................................................

               151    -    201
UN18698        --> TTGAAATGTGTG-GGACTAGAGAGTTTCTGAATTCGGAAAAGTTCTGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- TTGAATTGTGTGTGGACTAGAGAGTTTCTGAATTCGGAAAAGTTACGAAT
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> TTGAAATGTGTG-GGACTAGAGAGTTTCTGAATTCGGAAAAGTTCTGAAT
EV544868       --> TTGAAATGTGTG-GGACTAGAGAGTTTCTGAATTCGGAAAAGTTCTGAAT
EV545176       --> TTGAAATGTGTG-GGACTAGAGAGTTTCTGAATTCGGAAAAGTTCTGAAT
EY920436       --> TTGAAATGTGTG-GGACTAGAGAGTTTCTGAATTCGGAAAAGTTCTGAAT
FD960639       --> TTGAAATGTGTG-GGACTAGAGAGTTTCTGAATTCGGAAAAGTTCTGAAT
EY911141       --> TTGAAATGTGTG-GGACTAGAGAGTTTCTGAATTCGGAAAAGTTCTGAAT
FD537023       --> TTGAAATGTGTG-GGACTAGAG--TTTCTGAATTCGGGAAAGTTTTGAAT
EX892702       --> ..............GACTAGAGAGTTTCTGAATTCGGAAAAGTTCTGAAT

               201    -    251
UN18698        --> AATTTCACTCTACCGATATACATAACAAGAACAAAAAAGAAACAGAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- AATT-CACTCTACCGATATACATAACAAGAACAAAAA--AAACAGAGAAA
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> AATTTCACTCTACCGATATACATAACAAGAACAAAAAAGAAACAGAGAAA
EV544868       --> AATTTCACTCTACCGATATACATAACAAGAACAAAAAAGAAACAGAGAAA
EV545176       --> AATTTCACTC-ACCGATATACATAACAAGAACAAAAAAGAAACAGAGAAA
EY920436       --> AATTTCACTCTACCGGTATACATAACAAGAACAAAAAAGAAACAGAGAAA
FD960639       --> AATTTCACTCTACCGATATACATAACAAGAACAAAGAAGAAACAGAGAAA
EY911141       --> AATT-CACTCTACCGATATACATAACAAGAACAAAAAAGAAATAGAGAAA
FD537023       --> AATT-CACTCTACCGATATACATAACAAGAACAAAAAAGAAACAGAAAAA
EX892702       --> AATTCAAATCTACCGATATACATAACAAGAACAAAAAAGAAACAGAGAAA

               251    -    301
UN18698        --> TAACTGAAGATGAATCTAGAAAGTCTTCTTTCTAGCAACAGCTTTTCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- TAACTGAAGATGAATC-AGAAAGTCTTCTTTCTAGCAACAGCTTTTCGAG
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> TAACTGAAGATGAATCTAGAAAGTCTTCTTTCTAGCAACAGCTTTTCGAG
EV544868       --> TAACTGAAGATGAATCTAGAAAGTCTTCTTTCTAGCAACAGCTTTTCGAG
EV545176       --> TAACTGAAGATGAATCTAGAAAGTCTTCTTTCTAGCAACAGCTTTTCGAG
EY920436       --> TAACTGAAGACGAATCTAGAAAGTCTTCTTTCTAGCAACAGCTTTTCGAG
FD960639       --> TAACTGAAGATGAATCTAGAAAGTCTTCTTTCTAGCAACAGCTTTTCGAG
EY911141       --> TAACTGAAGATGAATCTAGAAAGTCTTCTTTCTAGCAACAGCTTTTCGAG
FD537023       --> TAACTGAAGATGAATCTAGAAAGTCTTCTTTCTAGTAACAGCTTTTCGAG
EX892702       --> TAACTGAAGATGAATCTAGAAAGTCTTCTTTCTAGCAACAGCTTTTCGAG

               301    -    351
UN18698        --> GTTCTCTCTTGGTAGAAGACGCACTGAACCCCGGAGATGAAAACCCAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- GTTCTCTCTTGGTAGAAGACGCAGTGAACCCCGGAGATGAAAACCCAACC
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> GTTCTCTCTTGGTAGAAGACGCACTGAACCCCGGAGATGAAAACCCAACC
EV544868       --> GTTCTCTCTTGGTAGAAGACGCACTGAACCCCGGAGATGAAAACCCAACC
EV545176       --> GTTCTCTCTTGGTAGAAGACGCACTGAACCCCGGAGATGAAAACCCAACC
EY920436       --> GTTCTCTCTTGGTAGAAGACGCACTGAACCCCGGAGATGAAAACCCAACC
FD960639       --> GTTATCTCTTGGTAGAAGACGCACTGAACCCCGGAGATGAAAACCCAACC
EY911141       --> GTTCTCTCTTGGTAGAAGACGCACTGAACCCCGGAGATGAAAACCCAACC
FD537023       --> GTTCTCTCTTGGTAGAAGACGCACTGAACCCCGGAGATGAAAACCCAACC
EX892702       --> GTTCTCTCTTGGTAGAAGACGCACTGAACCCCGGAGATGAAAACCCAACC

               351    -    401
UN18698        --> GTGGATTGGTATATGTCTTTCAACCTGGGGATGCTGATGAACAGAGCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- GTGGATTGGTATATGTCTTTCAACCTGGGGATGCTGATGAACAGAGCAAT
FY438114       <-- ..................TTCAACCTGGGGATGCTGATGAACAGAGCAAT
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> GTGGATTGGTATATGTCTTTCAACCTGGGGATGCTGATGAACAGAGCAAT
EV544868       --> GTGGATTGGTATATGTCTTTCAACCTGGGGATGCTGATGAACAGAGCAAT
EV545176       --> GTGGATTGGTATATGTCTTTCAACCTGGGGATGCTGATGAACAGAGCAAT
EY920436       --> GTGGATTGGTATATGTCTTTCAACCTGGGGATGCTGATGAACAGAGCAAT
FD960639       --> GTGGATTGGTATATGTCTTTCAACCTGGGGATGCTGATGAACAGAGCAAT
EY911141       --> GTGGATTGGTATATGTCTTTCAACCTGGGGATGCTGATGAACAGAGCAAT
FD537023       --> GTGGATTGGTATATGTCTTTCAACCTGGGGATGCTGATGAACAGAGCAAT
EX892702       --> GTGGATTGGTATATGTCTTTCAACCTGGGGATGCTGATGAACAGAGCAAT

               401    -    451
UN18698        --> TGCCGCAATGCCAGTAACAAGTGGCAATATAGCTGCAGGAGTCACTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- TGCCGCAATGCCAGTAACAAGTGGCAATATAGCTGCAGGAGTCACTTCCT
FY438114       <-- TGCCGCAATGCCAGTAACAAGTGGCAATATAGCTGCAGGAGTCACTTCCT
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> TGCCGCAATGCCAGTAACAAGTGGCAATATAGCTGCAGGAGTCACTTCCT
EV544868       --> TGCCGCAATGCCAGTAACAAGTGGCAATATAGCTGCAGGAGTCACTTCCT
EV545176       --> TGCCGCAATGCCAGTAACAAGTGGCAATATAGCTGCAGGAGTCACTTCCT
EY920436       --> TGCCGCAATGCCAGTAACAAGTGGCAATATAGCTGCAGGAGTCACTTCCT
FD960639       --> TGCCGCAATGCCAGTAACAAGTGGCAATATAGCTGCAGGAGTCACTTCCT
EY911141       --> TGCCGCAATGCCAGTAACAAGTGGCAATATAGCTGCAGGAGTCACTTCCT
FD537023       --> TGCCGCAATGCCAGTAACAAGTGGCAATATAGCTGCAGGAGTCACTTCCT
EX892702       --> TGCCGCAATGCCAGTAACAAGTGGCAATATAGCTGCAGGAGTCACTTCCT

               451    -    501
UN18698        --> GACTCTGATGATCTGCCACGATGCTGTATCGAAGTGGACCGACATGTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- GACTCTGATGATCTGCCACGATGCTGTATCGAAGTGGACCGACATGTATT
FY438114       <-- GACTCTGATGATCTGCCACGATGCTGTATCGAAGTGGACCGACATGTATT
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> GACTCTGATGATCTGCCACGATGCTGTATCGAAGTGGACCGACATGTATT
EV544868       --> GACTCTGATGATCTGCCACGATGCTGTATCGAAGTGGACCGACATGTATT
EV545176       --> GACTCTGATGATCTGCCACGATGCTGTATCGAAGTGGACCGACATGTATT
EY920436       --> GACTCTGATGATCTGCCACGATGCTGTATCGAAGTGGACCGACATGTATT
FD960639       --> GACTCTGATGATCTGCCACGATGCTGTATCGAAGTGGACCGACATGTATT
EY911141       --> GACTCTGATGATCTGCCACGATGCTGTATCGAAGTGGACCGACATGTATT
FD537023       --> GACTCTGATGATCTGCCACGATGCTGTATCGAAGTGGACCGACATGTATT
EX892702       --> GACTCTGATGATCTGCCACGATGCTGTATCGAAGTGGACCGACATGTATT

               501    -    551
UN18698        --> TGAGCATTTGTCTCTAAATCCACTTCGATGCTCTCTGATACTACTTTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- TGAGCATTTGTCTCTAAATCCACTTCGATGATCTCTGATACTACTTTATG
FY438114       <-- TGAGCATTTGTCTCTAAATCCACTTCGATGATCTCTGATACTACTTTATG
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> TGAGTATTTGTCTCTAAATCCACTTCGACGCTCTCTGATACTACTTTATG
EV544868       --> TGAGCATTTGTCTCTAAATCCACTTCGATGCTCTCTGATACTACTTTATG
EV545176       --> TGAGCATTTGTCTCTAAATCCACTTCGATGCTCTCTGATACTACTTTATG
EY920436       --> TGAGCATTTGTCTCTAAATCCACTTCGATGCTCTCTGATACTACTTTATG
FD960639       --> TGAGCATTTGTCTCTAAATCCACTTCGATGCTCTCTGATACTACTTTATG
EY911141       --> TGAGCATTTGTCTCTAAATCCACTTCGATGCTCTCTGATACTACTTTATG
FD537023       --> TGGGCATTTGTCTCTAAATCCACTTCGATGATCTCTGATACTACTTTATG
EX892702       --> TGAGCATTTGTCTCTAAATCCACTTCGATGCTCTCTGATACTACTTTATG

               551    -    601
UN18698        --> GGAGCCTAAAGGACGGTTGGATTTAAGCTGCACAAGGTGTTTACCTCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- GGAGCCTAAAGGACGGTTGGATTTAAGCTGCACAAGGTGTTTACCTCTGG
FY438114       <-- GGAGCCTAAAGGACGGTTGGATTTAAGCTGCACAAGGTGTTTACCTCTGG
FD964709       <-- ................................................GG
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> GGAGCCTAAAGGACGGTTGGATTTAAGCTGCACAAGGTGTTTACCTCTGG
EV544868       --> GGAGCCTAAAGGACGGTTGGATTTAAGCTGCACAAGGTGTTTACCTCTGG
EV545176       --> GGAGCCTAAAGGACGGTTGGATTTAAGCTGCACAAGGTGTTTACCTCTGG
EY920436       --> GGAGCCTAAAGGACGGTTGGATTTAAGCTGCACAAGGTGTTTACCTCTGG
FD960639       --> GGAGCCTAAAGGACGGTTGGATTTAAGCTGCACAAGGTGTTTACCTCTGG
EY911141       --> GGAGCCTAAAGGACGGTTGGATTTAAGCTGCACAAGGTGTTTACCTCTGG
FD537023       --> GGAGCCTAAAGGACGGTTGGATTTAAGCTGCACAAGGTGTTTACCTCTGG
EX892702       --> GGAGCCTAAAGGACGGTTGGATTTAAGCTGCACAAGGTGTTTACCTCTGG

               601    -    651
UN18698        --> ATAACCCTTTTACTTGGAAGAAGTTGGAAAGTGGTAGTGGGAAGACACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ATAACCCTTTTACTTGGAAGAAGTTGGAAAGTGGTAGTGGGAAGACACTC
FY438114       <-- ATAACCCTTTTACTTGGAAGAAGTTGGAAAGTGGTAGTGGGAAGACACTC
FD964709       <-- ATA-CCCTTTTACTTGGAAGAAGTTGGAAAGTGGTAGTGGGAAGACACTC
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> ATAACCCTTTTACTTGGAAGAAGTTGGAAAGTGGTAGTGGGAAGACACTC
EV544868       --> ATAACCCTTTTACTTGGAAGAAGTTGGAAAGTGGTAGTGGGAAGACACTC
EV545176       --> ATAACCCTTTTACTTGGAAGAAGTTGGAAAGTGGTAGTGGGAAGACACTC
EY920436       --> ATAACCCTTTTACTTGGAAGAAGTTGGAAAGTGGTAGTGGGAAGACACTC
FD960639       --> ATAACCCTTTTACTTGGAAGAAGTTGGAAAGTGGTAGTGGGAAGACACTC
EY911141       --> ATAACCCTTTTACTTGGAAGAAGTTGGAAAGTGGTAGTGGGAAGACACTC
FD537023       --> ATAACCCTTTTACTTGGAAGAAGTTGGAAAGTGGTAGCGGAAAGACATTC
EX892702       --> ATAACCCTTTTACTTGGAAGAAGTTGGAAAGTGGTAGTGGGAAGACACTC

               651    -    701
UN18698        --> TCTACTTTAGATACATCACTGGCTGATTTGATCTCCACTAGCAGGTTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- TCTACTTTAGATACATCACTGGCTGATTTGATCTCCACTAGCAGGTTCGC
FY438114       <-- TCTACTTTAGATACATCACTGGCTGATTTGATCTCCACTAGCAGGTTCGC
FD964709       <-- TCTACTTTAGATACATCACTGGCTGATTTGATCTCCACTAGCAGGTTCGT
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> TCTACTTTAGATACATCACTGGCTGATTTGATCTCCACTAGCAGGTTCGT
EV544868       --> TCTACTTTAGATACATCACTGGCTGATTTGATCTCCACTAGCAGGTTCGT
EV545176       --> TCTACTTTAGATACATCACTGGCTGATTTGATCTCCACTAGCAGGTTCGT
EY920436       --> TCTACTTTAGATACATCACTGGCTGATTTGATCTCCACTAGCAGGTTCGT
FD960639       --> TCTACTTTAGATACATCACTGGCTGATTTGATCTCCACTAGCAGGTTCGT
EY911141       --> TCTACTTTAGATACATCACTGGCTGATTTGATCTCCACTAGCAGGTTCGT
FD537023       --> TCTACTTTAGATACATCACTGGCTGATTTGATCTCCACTAGCAGGTTCGT
EX892702       --> TCTACTTTAGATAAATCACTGGCTGATTTGATCTCCACTAGCAGGTTCGT

               701    -    751
UN18698        --> GTTTACTTCTTCGATCTGTTTTCCTTCCACGTGGCATGTTAATATGGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- GTTTACTTCTTCGCTCTGTTTTCCTTCTACATGGCATGTTAATATGGTCG  Raphanus sativus cv GSK3-1
FY438114       <-- GTTTACTTCTTCGCTCTGTTTTCCTTCTACATGGCATGTTAATATGGTCG  Raphanus sativus cv GSK3-1
FD964709       <-- GTTTA-TTCTTCGATCTGTTTTCCTTCCACGTGGCATGTTAATATGGTCG  Raphanus raphanistrum subsp. maritimus
EY915262       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915356       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549383       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY442227       <-- ..................................................  Raphanus sativus cv GSK3-1
EY924829       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD540533       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY911217       --> GTTTACTTCTTCGATCTGCTTTCCTTCCACGTGGCATGTTAATATGGTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544868       --> GTTTACTTCTTCGATCTGTTTTCCTTCCACGTGGCATGTTAATAT.....  Raphanus raphanistrum subsp. raphanistrum (NY)
EV545176       --> GTTTACTTCTTCGATCTGTTTTCCTTCCACGTGGCATGTTAATATGGTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920436       --> GTTTACTTCTTCGATCTGTTTTCCTTCCACGTGGCATGTTAATATGGTCG  Raphanus raphanistrum subsp. landra
FD960639       --> GTTTACTTCTTCGATCTGTTTTCCTTCCACGTGGCATGTTAATATGGTCG  Raphanus raphanistrum subsp. maritimus
EY911141       --> GTTTACTTCTTCGATCTGTTTTCCTTCTACATGGCATGTTAATATGGTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537023       --> GTTTACTTCTTCGCTCTGTTTTCCTTCTACGTGGCATGTTAATATGGTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892702       --> GTTTACTTCTTCGATCTGTTTTCCTTCCACGTGGCATGTTAATATGGTCG  Raphanus sativus var. oleiformis

               751    -    801
UN18698        --> TTTCTGGTTGTTCAAATACCAAAAAGTCTACCCCGTGGATATCTTCATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- TTTCTGGTTGTTCAAATACCAAAAAGTCTACCCCGTGGATATCTTCATAA
FY438114       <-- TTTCTGGTTGTTCAAATACCAAAAAGTCTACCCCGTGGATATCTTCATAA
FD964709       <-- TTTCTGGTCGTTCAAATACCAAAAAGTCTACCCCGTGGATATCTTCATAA
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> TTTCTGGTTGTTCAAATACC..............................
EV544868       --> ..................................................
EV545176       --> TTTCTGGTTGTTCAAATACCAAAAAGTCTACCCCGTGGATATCTTCATAA
EY920436       --> TTTCTGGTTGTTCAAATACCAAAAAGTCTACCCCGTGGATATCTTCATAA
FD960639       --> TTTCTGG...........................................
EY911141       --> TTTCTGGTTGTTCAAATACCAAAAA.........................
FD537023       --> TTTCTGGTTGTTCAAATACCAAAAAGTCTACCCCGTGGATATCTTCATAA
EX892702       --> TTTCTGGTTGTTCAAATACCAAAAAGTCTACCCCGTGGATATCTTCATAA

               801    -    851
UN18698        --> CCAATCTGAAGAGAAACCGATTCTGGAGATGCACGTTCGATTTTATTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- CCAATCTGAAGAGAAACCGATTCTGGAGATGCACGTTCGATTTTATTGTT
FY438114       <-- CCAATCTGAAGAGAAACCGATTCTGGAGATGCACGTTCGATTTTATTGTT
FD964709       <-- CCAATCTGAAGAGAAACCGATTCTGGAGATGCACGTTCGATTTTATTGTT
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> CCAATCTGAAGAGAAACCGATTCTGGAGATGCACGTTCGATTTTATTGTT
EY920436       --> CCAATCTGAAGAGAAACCGATTCTGGAGATGCACGTTCGATTTTATTGTT
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> CCAATCTGAAGAGAAACAGATTCTGGAGATGCACGTTCGATTTTATTGTT
EX892702       --> CCAATCTGAAGAGAAACCGATTCTGGAGATGCACGTTCGATTTTATTGTT

               851    -    901
UN18698        --> GCCTGAACCATTTCTTTTCGATACTTTGATTACATATGTTGCACCTGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- GCCTGAACCATTTCTTTTCGATACTTTGATTACATATGTCGCACCTGGAT
FY438114       <-- GCCTGAACCATTTCTTTTCGATACTTTGATTACATATGTCGCACCTGGAT
FD964709       <-- GCCTGAACCATTTCTTTTCGATACTTTGATTACATATGTTGCACCTGGAT
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> GCCTGAACCATTTCTTTT................................
EY920436       --> GCCTGAACCATTTCTTTTCGAT............................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> GCCTGAACCATTTCTTTTCGATACTTTGATTACATATGTTGCACCTGGAT
EX892702       --> GCCTGAACCATTTCTTTTCGATACTTTGATTACATATGTTGCAC......

               901    -    951
UN18698        --> GTAACCCTCTCAGACGGTAATTTCCATCAATATCACTTGTGGTTTCCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- GTAACCCTCTCAGACGGTAAGTTCCATCAATATCACTTGTGGTTTCCTCA
FY438114       <-- GTAACCCTCTCAGACGGTAATTTCCATCAATATCACTTGTGGTTTCCTCA
FD964709       <-- GTAACCCTCTCAGACGGTAATTTCCATCAATATCACTTGTc.........
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> GTAACCCTCTCA......................................
EX892702       --> ..................................................

               951    -   1001
UN18698        --> TAGTATCCTTTGGAATCAGAGCGAGCTTCAATTGCAACGCCTTCCTGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- TAGTATCCT.........................................
FY438114       <-- TAGTATCCTTTGGAATCAGAGCGAGCTTCAATTGCAACGCCTTCCTGTGG
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1001   -   1051
UN18698        --> TTGGCCAGATAGGAGAGCGACTCTACCCATTGCACTGTAGGCAACACGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- TTGGCCAGATAGGAGAGCGACTCTACCCATTGCACTGTAGGCAACACGAG
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1051   -   1101
UN18698        --> TAGCCTCAAAGACAGCTTCACTGGACTCCCCAGAGCCCAGTTCTATTGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- TAGCCTCAAAGACAGCTTCACTGGACTCCCCAGAGCCCAGTTCTATTGCC
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1101   -   1151
UN18698        --> AGTGTTGAGGGCTTGAAAGAATATTCCTTAAGAAGGGGGCGCAAGTAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- AGTGTTGAGGGCTTGAAAGAATATTCCTTAAGAAGGGGGCGCAAGTAGAA
FD964709       <-- ..................................................
EY915262       <-- ..............................AGAAGGGGGCGCAAGTAGAA
EY915356       <-- ..............................AGAAGGGGGCGCAAGTAGAA
EV549383       <-- .....................................GGCGCAAGTAGAA
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1151   -   1201
UN18698        --> ATTTCCAGGAAACAAGCTATCAAATACAAAGAGTCCACCAGCGCCAGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ATTTCCAGGAAACAAGCTATCAAATACAAAGAGTCCACCAGCGCCAGATA
FD964709       <-- ..................................................
EY915262       <-- ATTTCCAGGAAACAAGCTATCAAATACAAAGAGTCCACCAGCGCCAGATA
EY915356       <-- ATTTCCAGGAAACAAGCTATCAAATACAAAGAGTCCACCAGCGCCAGATA
EV549383       <-- ATTTCCAGGAAACAAGCTATCAAATACAAAGAGTCCACCAGCGCCAGATA
FY442227       <-- ..........................CAAAGAGTCCACCAGCGCCAGATA
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1201   -   1251
UN18698        --> TAGAATTATTTCTGTAACCATGATCGCCACTCAACGATAACAACAATGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- TAGAATTATTTCTGTAACCATGATCGCCACTCAACG..............
FD964709       <-- ..................................................
EY915262       <-- TAGAATTACTTCTGTAACCATGATCGCCACTCAACGATAACAACAATGGT
EY915356       <-- TAGAATTATTTCTGTAACCATGATCGCCACTCAACGATAACAACAATGGT
EV549383       <-- TAGAATTATTTCTGTAACCATGATCGCCACTCAACGATAACAACAATGGT
FY442227       <-- TAGAATTATTTCTGTAACCATGATCGCCACTCAACGATAACAACAATGGT
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1251   -   1301
UN18698        --> GGGACTGATGTCTCGGCATTGTCCTTTGAGGAAACACGCACAGAGATCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- GGGACTGATGTCTCGGCATTGTCCTTTGAGGAAACACGCACAGAGATCTG
EY915356       <-- GGGACTGATGTCTCGGCATTGTCCATTGAGGAAACACGCACAGAGATCTG
EV549383       <-- GGGACTGATGTCTCGGCATTGTC-TTTGAGGAAACACGCACAGAGATCTG
FY442227       <-- GGGACTGATGTCTCGGCATTGTCCTTTGAGGAAACACGCACAGAGATCTG
EY924829       <-- ..................................................
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1301   -   1351
UN18698        --> ACCAAGCTTCTGGCAGGAGAAGGAGTATGGTCCTAGTCTTTTAATATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ACCAAGCTTCTGGCAGGAGAAGGAGTATGGTCCTAGTCTTTTAATATGAT
EY915356       <-- ACCAAGCTTCTGGCAGGAGAAGGAGTATGGTCCTAGTCTTTTAATATGAT
EV549383       <-- ACCAAGCTTCTGGCAGGAGAAGGAGTATGGTCCTAGTCTTTTAATATGAT
FY442227       <-- ACCAAGCTTCTGGCAGGAGAAGGAGTATGGTCCTAGTCTTTTAATATGAT
EY924829       <-- ....................................TCTTTTAATATGAT
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1351   -   1401
UN18698        --> AGCCAGGCTTTGATGCATCGGTGTCATATGGTATATCATCATACAATGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- AGCCAGGCTTTGATGCATCGGTGTCATATGGTATATCATCATACAATGGC
EY915356       <-- AGCCAGGCTTTGATGCATCGGTGTCATATGGTATATCATCATACAATGGC
EV549383       <-- AGCCAGGCTTTGATGCATCGGTGCCATATGGTATATCATCATACAATGGC
FY442227       <-- AGCCAGGCTTTGATGCATCGGTGTCATATGGTATATCATCATACAATGGC
EY924829       <-- AGCCAGGCTTTGATACATCGGTGTCATATGGTATATCATCATACAATGGC
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1401   -   1451
UN18698        --> CCAGCAACAAAAGAACCATCTGGTGATGTGCTTGTTTCAACAGCTACTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- CCAGCAACAAAAGAACCATCTGGTGATGTGCTTGTTTCAACAGCTACTTC
EY915356       <-- CCAGCAACAAAAGGACCATCTGGTGATGTGCTTGTTTCAACAGCTACTTC
EV549383       <-- CCAGCAACAAAAGAACCATCTGGTGATGTGCTTGTTTCAACAGCTACTTC
FY442227       <-- CCAGCAACAAAAGAACCATCTGGTGATGTGCTTGTTTCAACAGCTACTTC
EY924829       <-- CCAGCAACAAAAGAACCATCTGGTGATGTGCTTGTTTCAACAGCTACTTC
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1451   -   1501
UN18698        --> ACCTTTCTTAAGTGAAGAAATAAGGCTGTCTTTTGCTGCAGAGACCTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ACCTTTCTTAAGTGAAGAAATAAGGCTGTCTTTCGCTGCAGAGACCTTAA
EY915356       <-- ACCTTTCTTAAGTGAAGAAATAAGGCTGTCTTTTGCTGCAGAGACCTTAA
EV549383       <-- ACCTTTCTTAAGTGAAGAAATAAGGCTGTCTTTTGCTGCAGAGACCTTAA
FY442227       <-- ACCTTTCTTAAGTGAAGAAATAAGGCTGTCTTTTGCTGCAGAGACCTTAA
EY924829       <-- ACCTTTCTTAAGTGAAGAAATAAGGCTGTCTTTTGCTGCAGAGACCTTAA
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1501   -   1551
UN18698        --> TGTTAACACCAGGAAGAGGAGGAGAGACCGATCCTTGTATGTAAAGACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- TGTTAACACCAGGAAGAGGAGGAGAGACCGATCCTTGTATGTAAAGACCA
EY915356       <-- TGTTAACACCAGGAAGAGGAGGAGAGACCGATCCTTGTATGTAAAGACCA
EV549383       <-- TGTTAACACCAGGAAGAGGAGGAGAGACCGATCCTTGTATGTAAAGACCA
FY442227       <-- TGTTAACACCAGGAAGAGGAGGAGAGACCGATCCTTGTATGTAAAGACCA
EY924829       <-- TGTTAACACCAGGAAGAGGAGGAGAGACCGATCCTTGTATGTAAAGACCA
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1551   -   1601
UN18698        --> GGTCGACCAGTAAATGGGGAAACAGCAGCTTGGCAACCATCATTTGACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- GGTCGACCAGTAAATGGGGAAACAGCAGCTTGGCAACCATCATTTGACAC
EY915356       <-- GGTCGACCAGTAAATGGGGAAACAGCAGCTTGGCAACCATCATTTGACAC
EV549383       <-- GGTCGACCAGTAAATGGGGAAACAGCAGCTTGGCAACCATCATTTGACAC
FY442227       <-- GGTCGACCAGTAAATGGGGAAACAGCAGCTTGGCAACCATCATTTGACAC
EY924829       <-- GGTCGACCAGTAAATGGGGAAACAGCAGCTTGGCAACCATCATTTGACAC
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1601   -   1651
UN18698        --> TACCGCACGAAGCTCTTTCGGATAAAATAACATCTTCTTCTCCGCATTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- TACCGCACGAAGCTCTTTCGGATAAAATAACATCTTCTTCTCCGCATTAC
EY915356       <-- TACCACACGAAGCTCTTTCGGATAAAATAACATCTTCTTCTCCACATTAC
EV549383       <-- TACCGCACGAAGCTCTTTCGGATAAAATAACATCTTCTTCTCCGCATTAC
FY442227       <-- TACCGCACGAAGCTCTTTCGGATAAAATAACATCTTCTTCTCCGCATTAC
EY924829       <-- TACCGCACGAAGCTCTTTCGGATAAAATAACATCTTCTTCTCCGCATTAC
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1651   -   1701
UN18698        --> CCCTAGAATCCCGAGGAACAAAGCTAATCTTTTCACCAAGATTTGCCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- CCCTAGAATCCCGAGGAACAAAGCTAATCTTTTCACCAAGATTTGCCCAG
EY915356       <-- CCCTAGAATCCCGAGGAACAAAGCTAATCTTTTCACCAAGATTTGCCCAG
EV549383       <-- CCCTAGAATCCCGAGGAACAAAGCTAATCTTTTCACCAAGATTTGCCCAG
FY442227       <-- CCCTAGAATCCCGAGGAACAAAGCTAATCTTTTCACCAAGATTTGCCCAG
EY924829       <-- CCCTAGAATCCCGAGGAACAAAGCTAATCTTTTCACCAAGATTTGCCCAG
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1701   -   1751
UN18698        --> GTATAGTACTCATACACACCACGTCCATCCGATGCAAGTTTGGCAGAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- GTATAGTACTCATACACACCACGTCCATCCGATGCAAGTTTGGCAGAAAC
EY915356       <-- GTATAGTACTCATACACACCACGTCCATCCGATGCAAGTTTGGCAGAAAC
EV549383       <-- GTATAGTACTCATACACACCACGTCCATCCGATGCAAGTTTGGCAGAAAC
FY442227       <-- GTATAGTACTCATACACACCACGTCCATCCGATGCAAGTTTGGCAGAAAC
EY924829       <-- GTATAGTACTCATACACACCACGTCCATCCGATGCAAGTTTGGCAGAAAC
FD540533       <-- ..................................................
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1751   -   1801
UN18698        --> ACTGTTGATAACTCTTCCTTCTTTGTCTTGCATATCAACAATGAAACTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ACTGTTGATAACTCTTCCTTCTTTGTCTTGCATATCAACAATGAAACTCT
EY915356       <-- ACTGTTGATAACTCTTCCTTCTTTGTCTTGCATATCAACAATGAAACCCT
EV549383       <-- ACTGTTGATAACTCTTCCTTCTTTGTCTTGCATATCAACAATGAAACTCT
FY442227       <-- ACTGTTGATAACTCTTCCTTCTTTGTCTTGCATATCAACAATGAAACTCT
EY924829       <-- ACTGTTGATAACTCTTCCTTCTTTGTCTTGCATATCAACAATGAAACTCT
FD540533       <-- ..................cttcctcgtcTGCATATCAACAATGAAACTCT
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1801   -   1851
UN18698        --> CTGGCAACTCAGATTCAGTCTCGGTTGAGCTAGACTCCACATTTATCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- CTGGCAACTCAGATTCAGTCTCGGTTGAGCTAGACTCCACATTTATCAAA
EY915356       <-- CTGGCAACTCAGATTCAGTCTCc...........................
EV549383       <-- CTGGCAACTCAGATTCAGTCTCGGTTGAGCTAGACTCCACATTTATCAAA
FY442227       <-- CTGGCAACTCAGATTCAGTCTCGGTTGAGCTAGACTCCACATTTATCAAA
EY924829       <-- CTGGCAACTCAGATTCAGTCTCGGTTGAGCTAGACTCCACATTTATCAAA
FD540533       <-- CTGGCAACTCAGATTCAGTCTCGGTTGAGCTAGATTCCACATTTATCAAA
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1851   -   1901
UN18698        --> CCTTTGATGAGATACTTCTCTGCCCTCAGATGAATAGGCTGTGGTTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- CCc...............................................
EY915356       <-- ..................................................
EV549383       <-- CCTTTGATGAGATACTTCTCTGCCCTCAGATGAATAGGCTGTGGTTTTGA
FY442227       <-- CCTTTGATGAGATACTTCTCTGCCCTCAGATGAATAGGCTGTGGTTTTGA
EY924829       <-- CCTTTGATGAGATACTTCTCTGCCCTCAGATGAATAGGCTGTGGTTTTGA
FD540533       <-- C-TTTGATGAGATACTTCTCTGCTCTCAGATGAATAGGCTGTGGTTTTGA
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1901   -   1951
UN18698        --> GACATCTATCTTTATTGAATTGCTCGCAAAGGATATGCAGGAGTCAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- GACATCTATCc.......................................
FY442227       <-- GACATCTATCTTTATTGAATTGCTCGCAAAGGATATGCAGGAGTCAGAAA
EY924829       <-- GACATCTATCTTTATTGAATTGCTCGCAAAGGATATGCAGGAGTCAGAAA
FD540533       <-- GACATCTATCTTTATTGAATTGCTCGCAAAGGATATGCAGGAGTCAGAAA
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               1951   -   2001
UN18698        --> GCTGAAGCTCATGCGCTCCAGGTGACTCAAGGCATATTTTCTGCGAACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- GCTGAAGCTCATGCGCTCCAGGTGACTCAAGGCATATTTTCTGCGAACCT
EY924829       <-- GCTGAAGCTCATGCGCTCCAGGTGACTCAAGGCATATTTTCTGCGAACCT
FD540533       <-- GCTGAAGCTCATGCGCTCCAGGTGACTCAAGGCATATTTTCTGCGAACCT
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               2001   -   2051
UN18698        --> TTCTTGATTTTCAAATTTGTAGGTGACCCAGTAGGATGAACAATTTTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- Tcc...............................................
EY924829       <-- TTCTTGATTTTCAAATTTGTAGGTGACCCAGTAGGATGAACAATTTTAGC
FD540533       <-- TTCTTGATTTTCAAATTTGTAGGTGACCCAGTAGGATGAACAATTTTAGC
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               2051   -   2101
UN18698        --> ATCCACCTCATGAGTACTGACAATATTAATCCAGTAACCTTTCTGGACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ATCCACCTCATGAGTACTGACAATA.........................
FD540533       <-- ATCCACCTCATGAGTACTGACAATATTAATCCAGTAACCTTTCTGGACAA
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               2101   -   2151
UN18698        --> ATTCGAGCCCTTTGATATCCTCAGTTCCGACATTCACATCGATGGAGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ATTCGAGCCCTTTGATATCCTCAGTTCCGACATTCACATCGATGGAGCTA
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               2151   -   2201
UN18698        --> TGGTCCCAGCACCAAGTGTCTTCCTCAGATATGGCTTCCGGTGAGATGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- TGGTCCCAGCACCAAGTGTCTTCCTCAGATATGGCTTCCGGTGAGATGCT
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               2201   -   2251
UN18698        --> TTTGACCTCAACTGTATACTTTCCAGGCAATACGTCTGAAAAGTGAAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- TTTGACCTCAACTGTATACTTTCCAGGCAATACGTCTGAAAAGTGAAATT
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               2251   -   2301
UN18698        --> GACTGCTCTCATCGGTTAAAATAACTGTCTTCTTGTCACGAACGCCAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- GACTGCTCTCATCGGTTAAAATAACTGTCTTCTTGTCACGAACGCCAGCC
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               2301   -   2351
UN18698        --> GCTCCCACAAGCGCCACTGAAACAGACGGACCACATTTCTCCTTGCACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- GCTCCCACAAGCGCCACTGAAACAGACGGACCACATTTCTCCTTGCACGT
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               2351   -   2401
UN18698        --> AACAGAACCATGCACATTGACTCGGGTCTGAGAAAATTCTATGTTCAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- AACAGAACCATGCACATTGACTCGGGTCTGAGAAAATTCTATGTTCAACA
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               2401   -   2451
UN18698        --> ATGGATTTTTGACGGAAACATCCATATAACCTGGCAAAAACAGAAGTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- ATGGATTTTTGACGGAAACATCCATATAACCTGGCAAAAACAGAAGTTCA
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               2451   -   2501
UN18698        --> GGAGCACTCTTTGGTGTTGCAGCGAAAGCAGACAGCCTATATTCGCCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ..................................................
FY438114       <-- ..................................................
FD964709       <-- ..................................................
EY915262       <-- ..................................................
EY915356       <-- ..................................................
EV549383       <-- ..................................................
FY442227       <-- ..................................................
EY924829       <-- ..................................................
FD540533       <-- GGAGCACTCTTTGGTGTTGCAGCGAAAGCAGACAGCCTATATTCGCCTGG
EY911217       --> ..................................................
EV544868       --> ..................................................
EV545176       --> ..................................................
EY920436       --> ..................................................
FD960639       --> ..................................................
EY911141       --> ..................................................
FD537023       --> ..................................................
EX892702       --> ..................................................

               2501   -   2551
UN18698        --> TGGAACCTCGAAGCAGAACC
                   ~~~~~~~~~~~~~~~~~~~~
FY444563       <-- ....................
FY438114       <-- ....................
FD964709       <-- ....................
EY915262       <-- ....................
EY915356       <-- ....................
EV549383       <-- ....................
FY442227       <-- ....................
EY924829       <-- ....................
FD540533       <-- TGGAACCTCGAAGCAGAACC
EY911217       --> ....................
EV544868       --> ....................
EV545176       --> ....................
EY920436       --> ....................
FD960639       --> ....................
EY911141       --> ....................
FD537023       --> ....................
EX892702       --> ....................