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Alignment for radish unigene UN18739

               1      -     51
UN18739        --> GGAGGTTTCGTGTAAAAAAACATTACAACACACAAATCTCAACACCACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> GGAGGTTTCGTGTAAAAAAACATTACAACACACAAATCTCAACACCACAA
FY430498       --> ..................................................
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> ..................................................
FD561846       --> ..................................................

               51     -    101
UN18739        --> AAAAGAACATTTTATTTATTAGAAAAAAACCCAAAAATGGCGCTCATGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> AAAAGAACATTTTATTTATTAAAAAAAAAACCAAAAATGGCGCTCATGAA
FY430498       --> ..........TTTATTTATTAGAAAAAAACCCAAAAATGGCGCTCATGAA
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> ..................................................
FD561846       --> ..................................................

               101    -    151
UN18739        --> CGGAAGCATGAATCTCTCGTCGATATACAACCACCGTCACTCAACCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> CGGAAGCATGAATCTCTCGTCGATATACAACCACCGTCACTCAACCTTCT
FY430498       --> CGGAAGCATGAATCTATCGTCGATATACAACCACCGTCACTCAACCTTCT
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> ..................................................
FD561846       --> ..................................................

               151    -    201
UN18739        --> CCTCCGCCGCGCCGAGAACCACGTCCCTCCGGATCTCCGCCGTGCAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> CCTCCGCCGCGCCGAGAACCACGTCCCTCCGGATCTCCGCCGTGCAAACC
FY430498       --> CCTCCGCCGCGCCAAGAACCACGTCCCTCCGGATCTCCGCCGTGCAAACC
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> ..................................................
FD561846       --> ..................................................

               201    -    251
UN18739        --> GACCCAAAACCACCGTCTTCATCGGTAACGACTCCGGCGACGGCGACGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> GACCCAAAACCACCGTCTTCATCGGTAACGACTCCGGCGACGGCGACGAA
FY430498       --> GACCCAAAACCACCGTCCTCATCGGTAACGACTCCGGCGACGGCGACGAA
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> ..................................................
FD561846       --> ..................................................

               251    -    301
UN18739        --> GCCGGTGGGGGTTAATGTGGGTAAGTCGAAATGGTCACCGGAGAGCTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> GCCGGTGGGGGTTAATGTGGGTAAGTCGAAATGGTCACCGGAGAGCTGGA
FY430498       --> GCCCGTGGGGGTTAATGTGGGTAAGTCGAAATGGTCACCGGAGAGCTGGA
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> ..................................................
FD561846       --> ..................................................

               301    -    351
UN18739        --> AGGCGAAGACGGCTCTTCAGCAGCCGGAGTACCCCGATGTATCCGAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> AGGCGAAGACGGCTCTTCAGCAGCCGGAGTACCCCGATGTATCCGAGCTC
FY430498       --> AGGCGAAGACGGCTCTTCAGCAGCCGGAGTACCCCGATGTAGCCGAGCTC
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> ..................................................
FD561846       --> ..................................................

               351    -    401
UN18739        --> GAAGCTGTGCTCGAGACGATCGAGGCTTTTCCTCCGATCGTTTTCGCCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> GAAGCTGTGCTCGAGACGATCGAGGCTTTTCCTCCGATCGTTTTCGCCGG
FY430498       --> GAAGCTGTGCTCGAGACGATCGAGGCTTTTCCTCCGATCGTTTTCGCCGG
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> ..................................................
FD561846       --> ..................................................

               401    -    451
UN18739        --> AGAAGCGAGGTTGCTTGAGGAGAGGCTAGGTCAAGCCGCGATGGGTGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> AGAAGCGAGGTTGCTCGAGGAGAGGCTAGGTCAAGCCGCGATGGGTGAAG
FY430498       --> AGAAGCGAGGTTGCTTGAGGAGAGGCTAGGTCAAGCCGCGATGGGTGAAG
FD564058       --> ....GCGAGGTTGCTTGACGAGAGGCTAGGTCAAGCCGCGATGGGTGAAG
FY443461       --> ....................AGAGGCTAGGTCAAGCCGCGATGGGTGAAG
FY443632       --> ......................AGGCTAGGTCAAGCCGCGATGGGTGAAG
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> ..................................................
FD561846       --> ..................................................

               451    -    501
UN18739        --> CGTTTCTGTTGCAGGGAGGTGACTGTGCTGAGAGCTTCAAAGAGTTCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> CGTTTCTGTT........................................
FY430498       --> CGTTTCTGTTGCAGGGAGGTGACTGTGCTGAGAGCTTCAAAGAGTTCAAC
FD564058       --> CGTTTCTGTTGCAAGGAGGTGACTGTGCTGAGAGCTTCAAAGAGTTCAAC
FY443461       --> CGTTTCTGTTGCAGGGAGGTGACTGTGCTGAGAGCTTCAAAGAGTTCAAC
FY443632       --> CGTTTCTGTTGCAGGGAGGTGACTGTGCTGAGAGCTTCAAAGAGTTCAAC
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> ..................................................
FD561846       --> ..................................................

               501    -    551
UN18739        --> GCCAACAACATTCGTGACACCTTTAGGATTCTTCTCCAGATGGGCGCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> ..................................................
FY430498       --> GCCAACAACATTCGTGACACCTTTAGGATTCTTCTCCAGATGGGCGCTGT
FD564058       --> GCTAACAACATTCGTGACACCTTTAGGATTCTTCTCCAGATGGGTGCTGT
FY443461       --> GCCAACAACATTCGTGACACCTTTAGGATTCTTCTCCAGATGGGCGCTGT
FY443632       --> GCCAACAACATTCGTGACACCTTTAGGATTCTTCTCCAGATGGGCGCTGT
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> ..................................................
FD561846       --> ..................................................

               551    -    601
UN18739        --> TTTGATGTTCGGTGGTCAAGTCCCTGTCGTTAAGGTTGGAAGAATGGCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> ..................................................
FY430498       --> TTTGATGTTCGGTGGTCAAGTCCCTGTCGTTAAGGTTGGAAGAATGGCGG
FD564058       --> TTTGATGATCGGTGGTCAAGTCCCTGTCGTTAAGGTTGGAAGAATGGCGG
FY443461       --> TTTGATGTTCGGTGGTCAAGTCCCTGTCGTTAAGGTTGGAAGAATGGCGG
FY443632       --> TTTGATGTTCGGTGGTCAAGTCCCTGTCGTTAAGGTTGGAAGAATGGCGG
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> ..................................................
FD561846       --> ..................................................

               601    -    651
UN18739        --> GTCAATTTGCGAAGCCGAGGTCTGATTCGTTTGAGGAGAGGGACGGAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> ..................................................
FY430498       --> GTCAATTTGCGAAGCCGAGGTCTGATTCGTTTGAGGAGAGGGACGGAGTG
FD564058       --> GTCAATTTGCGAAGCCGAGGTCTGATTCGTTTGAGGAGAGGGACGGAGTG
FY443461       --> GTCAATTTGCGAAGCCGAGGTCTGATTCGTTTGAGGAGAGGGACGGAGTG
FY443632       --> GTCAATTTGCGAAGCCGAGGTCTGATTCGTTTGAGGAGAGGGACGGAGTG
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> ..................................................
FD561846       --> ..................................................

               651    -    701
UN18739        --> AAGTTGCCTAGTTACAGAGGAGATAACATCAATGGAGATGCGTTTGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> ..................................................
FY430498       --> AAGTTGCCTAGTTACAGAGGAGATAACATCAATGGAGATGCGTTTGATTC
FD564058       --> AAGTTGCCTAGTTACAGAGGAGATAACATCAACGGAGATGCGTTTGATTC
FY443461       --> AAGTTGCCTAGTTACAGAGGAGATAACATCAATGGAGATGCGTTTGATTC
FY443632       --> AAGTTGCCTAGTTACAGAGGAGATAACATCAATGGAGATGCGTTTGATTC
EX762257       --> .............................gAATGGAGATGCGTTTGATTC
EY916449       --> ..................................................
FD533971       --> ..................................................
FD561846       --> ..................................................

               701    -    751
UN18739        --> CAAGTCTAGGATTCCTGATCCACAGAGGATGATCAGAGCTTACTGTCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> ..................................................
FY430498       --> CAAGTCTAGGATTCCTGATCCACAGAGGATGATCAGAGCTTACTGTCAAT
FD564058       --> CAAGTCTAGGATTCCAGATCCACAGAGGATGATCAGAGCTTACTGTCAAT
FY443461       --> CAAGTCTAGGATTCCTGATCCACAGAGGATGATCAGAGCTTACTGTCAAT
FY443632       --> CAAGTCTAGGATTCCTGATCCACAGAGGATGATCAGAGCTTACTGTCAAT
EX762257       --> CAAGTCTAGGATTCCTGATCCACAGAGGATGATCAGAGCTTACTGTCAAT
EY916449       --> ...............gGATCCACAGAGGATGATCAGAGCTTACTGTCAAT
FD533971       --> ..................................................
FD561846       --> ..................................................

               751    -    801
UN18739        --> CTGCAGCTACTCTGAATCTCTTGAGAGCTTTTGCTACTGGTGGTTATGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> ..................................................
FY430498       --> CTGCAGCTACTCTGAATCTCTTGAGAGCTTTTGCTACTGGTGGTTATGCT
FD564058       --> CTGCAGCTACTCTGAATCTCTTGAGAGCTTTTGCTACTGGTGGTTATGCT
FY443461       --> CTGCAGCTACTCTGAATCTCTTGAGAGCTTTTGCTACTGGTGGTTATGCT
FY443632       --> CTGCAGCTACTCTGAATCTCTTGAGAGCTTTTGCTACTGGTGGTTATGCT
EX762257       --> CTGCAGCTACTCTGAATCTCTTGAGAGCTTTTGCTACTGGTGGTTATGCT
EY916449       --> CTGCAGCTACTCTGAATCTCTTGAGAGCTTTTGCTACTGGTGGTTATGCT
FD533971       --> ..................................................
FD561846       --> ..................................................

               801    -    851
UN18739        --> GCTATGCAGAGAGTTACTCAGTGGAATCTTGATTTCACTGAAAAAAGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> ..................................................
FY430498       --> GCTATGCAGAGAGTTACTCAGTGGAATCTTGATTTCACTGAAAAAAGTGA
FD564058       --> GCTATGCAGAGAGTTACTCAGTGGAATCTTGATTTCACTGAAAAAAGTGA
FY443461       --> GCTATGCAGAGAGTTACTCAGTGGAATCTTGATTTCACTGAAAAAAGTGA
FY443632       --> GCTATGCAGAGAGTTACTCAGTGGAATCTTGATTTCACTGAAAAAAGTGA
EX762257       --> GCTATGCAGAGAGTTACTCAGTGGAATCTTGATTTCACTGAAAAAAGTGA
EY916449       --> GCTATGCAGAGAGTTACTCAGTGGAATCTTGATTTCACTGAAAAAAGTGA
FD533971       --> ..................................................
FD561846       --> ..................................................

               851    -    901
UN18739        --> GCAAGGAGACAGGTACCGTGAACTAGCTAACCGTGTTGATGAAGCGCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> ..................................................
FY430498       --> GCAAGGAGACAGGTACCGTGAACTAGCTAACCGTGTTGATGA........
FD564058       --> GCAAGGAGACAGGTACCGTGAACTGGCTAACCGTGTTGATGAAGCGCTTG
FY443461       --> GCAAGGAGACAGGTACCGTGAACTAGCTAACCGTGTTGATGAAGCGCTTG
FY443632       --> GCAAGGAGACAGGTACCGTGAACTAGCTAACCGTGTTGATGAAGCGCTTG
EX762257       --> GCAAGGAGACAGGTACCGTGAACTAGCTAACCGTGTTGATGAAGCGCTTG
EY916449       --> GCAAGGAGACAGGTACCGTGAACTAGCTAACCGTGTTGATGAAGCGCTTG
FD533971       --> ...gGGAGACAGTTACCGTGAACTAGCTAACCGTGTTGATGAAGCGCTTG
FD561846       --> ..................................................

               901    -    951
UN18739        --> GTTTCATGCACGCTGCTGGACTCACGTTAGACCATCCCATCATGCAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..................................................
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> ..................................................
FY430498       --> ..................................................
FD564058       --> GTTTCATGCACGCTGCTGGACTCACGCTAGACCATCCCATCATGCAAACA
FY443461       --> GTTTCATGCACGCTGCTGGACTCACGTTAGACCATCCCATCATGCAAACA
FY443632       --> GTTTCATGCACGCTGCTGGACTCACGTTAGACCATCCCATCATGCAAACA
EX762257       --> GTTTCATGCACGCTGCTGGACTCACGTTAGACCATCCCATCATGCAAACA
EY916449       --> GTTTCATGCACGCTGCTGGACTCACGCTAGACCACCCCATCATGCAAACA
FD533971       --> GTTTCATGCACGCTGCTGGACTCACGCTAGACCACCCCATCATGCAAACA
FD561846       --> ..................................................

               951    -   1001
UN18739        --> ACTGATTTCTGGACTTCTCACGAGTGTCTGCTCTTGCCTTATGAGCAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- .......................................TATGAGCAATC
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> ..................................................
FY430498       --> ..................................................
FD564058       --> ACTGATTTCTGGACTTCTCATGAGTGTCTGCTCTTGCCTTATGAGCAATC
FY443461       --> ACAGATTTCTGGACTTCTCACGAGTGTCTGCTCTTGCCTTATGAGCAATC
FY443632       --> ACAGATTTCTGGACTTCTCACGAGTGTCTGCTCTTGCCTTATGAGCAATC
EX762257       --> ACAGATTTCTGGACTTCTCACGAGTGTCTGCTCTTGCCTTATGAGCAATC
EY916449       --> ACTGATTTCTGGACTTCTCACGAGTGTCTGCTCTTGCCTTATGAGCAATC
FD533971       --> ACTGATTTCTGGACTTCTCACGAGTGTCTGCTCTTGCCTTATGAGCAATC
FD561846       --> ..................................................

               1001   -   1051
UN18739        --> ACTAACAAGGCTTGACTCTACTTCTGGTCTCTACTACGACTGTTCTGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ACTAACAAGGCTTGACTCTACTTCTG-TCTCTACTACGACTGTTCTGCTC
FD565895       <-- ..................................................
EY912131       <-- ..................................................
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> ..................................................
FY430498       --> ..................................................
FD564058       --> ACTAACAAG-CTTGACTCTACTTCTGGTCTCTACTACGACTGTTCTGCTC
FY443461       --> ACTAACAAGGCTTGACTCTACTTCTGGTCTCTACTACGACTGTTCTGCTC
FY443632       --> ACTAACAAGGCTTGACTCTACTTCTGGTCTCTACTACGACTGTTCTGCTC
EX762257       --> ACTAACAAGGCTTGACTCTACTTCTGGTCTCTACTACGACTGTTCTGCTC
EY916449       --> ACTAACAAGGCTTGACTCTACTTCTGGTCTCTACTACGACTGTTCTGCTC
FD533971       --> ACTAACAAGGCTTGACTCTACTTCTGGTCTCTACTACGACTGTTCTGCTC
FD561846       --> ..................................................

               1051   -   1101
UN18739        --> ATATGATCTGGGTCGGTGAGCGAACCAGACAGCTCGATGGAGCTCATGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ATATGATCTGGGTCGGTGAGCGAACCAGACAGCTCGATGGAGCTCATGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD565895       <-- ............................................gATGTA  Raphanus sativus var. oleiformis
EY912131       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY944248       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FY440517       <-- ..................................................  Raphanus sativus cv GSK3-1
EY948569       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FY430498       --> ..................................................  Raphanus sativus cv GSK3-1
FD564058       --> ATATGATCTGGGTCGGTGAGCGAACCAGACAGCTCGATGGAGCTCATGTA  Raphanus sativus var. oleiformis
FY443461       --> ATATGATCTGGGTCGGTGAGCGAACCAGACAGCTCGATGGAGCTCATGTG  Raphanus sativus cv GSK3-1
FY443632       --> ATATGATCTGGGTCGGTGAGCGAACCAGACAGCTCGATGGAGCTCATGTG  Raphanus sativus cv GSK3-1
EX762257       --> ATATGATCTGGGTCGGTGAGCGAACCAGACAGCTCGATGGAGCTCATGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916449       --> ATATGATCTGGGTCGGTGAGCGAACCAGACAGCTCGATGGAGCTCATGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD533971       --> ATATGATCTGGGTCGGTGAGCGAACCAGACAGCTCGATGGAGCTCATGTA  Raphanus raphanistrum subsp. maritimus
FD561846       --> ............................................gATGTA  Raphanus sativus var. oleiformis

               1101   -   1151
UN18739        --> GAGTTCTTAAGAGGTGTTGCTAATCCTCTTGGAATCAAGGTGAGTGATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- GAGTTCTTAAGAGGTGTTGCTAATCCTCTTGGAATCAAGGTGAGTGATAA
FD565895       <-- GAGTTCTTAAGAGGTGTTGCTAATCCTCTTGGAATCAAGGTGAGTGATAA
EY912131       <-- ....................................AAGGTGAGTGATAA
EY944248       <-- ..................................................
FY440517       <-- ..................................................
EY948569       --> ..................................................
FY430498       --> ..................................................
FD564058       --> GAGTTCTTAAGAG-TGTTGCTAATCCTCTTGGA-TCAAG-TGAGTGATAA
FY443461       --> GAGTTCTTAAGAGGTGTTGCTAATCCTCTTGGAATCAAGGTGAGTGATAA
FY443632       --> GAGTTCTTAAGAGGTGTTGCTAATCCTCTTGGAATCAAGGTGAGTGATAA
EX762257       --> GAGTTCTTAAGAGGTGTTGCTAATCCTCTTGGAATCAAGGTGAGTGATAA
EY916449       --> GAGTTCTTAAGAGGTGTTGCTAATCCTCTTGGAATCAAGGTGAGTGATAA
FD533971       --> GAGTTCTTAAGAGGTGTTGCTAATCCTCTTGGAATCAAGGTGAGTGATAA
FD561846       --> GAGTTCTTAAGAGGTGTTGCTAATCCTCTTGGAATCAAGGTGAGTGATAA

               1151   -   1201
UN18739        --> GATGGATCCAAAGGAGCTAGTGAAGCTGATTGAGATCTTGAATGCTGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- GATGGATCCAAAGGAGCTAGTGAAGCTGATTGAGATCTTGAATGCTGATA
FD565895       <-- GATGGATCCAAAGGAGCTAGTGAAGCTGATTGAGATCTTGAATGCTGATA
EY912131       <-- GATGGATCCAAAGGAGCTAGTGAAGCTGATTGAGATCTTGAATGCTGATA
EY944248       <-- ................................................TA
FY440517       <-- ..................................................
EY948569       --> ..................................................
FY430498       --> ..................................................
FD564058       --> GATGGATCCAAAGGAGCTAGTGA-GCTGAT-GAGATCT............
FY443461       --> GATGGATCCAAAGGAGCTAGTGAAGCTGATTGAGATCTTGAATGCTGATA
FY443632       --> GATGGATCCAAAGGAGCTAGTGAAGCTGATTGAGATCTTGAATGCTGATA
EX762257       --> GATGGATCCAAAGGAGCTAGTGAAGCTGATTGAGATCTTGAATGCTGATA
EY916449       --> GATGGATCCAAAGGAGCTAGTGAAGCTGATTGAGATCTTGAATGCTGATA
FD533971       --> GATGGATCCAAAGGAGCTAGTGA-GCTGATTGAGATTTTGAATGCTGATA
FD561846       --> GATGGATCCAAAGGAGCTAGTGAAGCTGATTGAGATCTTGAATGCTGATA

               1201   -   1251
UN18739        --> ATAAGCCTGGAAGGATCACGATTATCACAAGAATGGGAGCAGAGAATATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ATAAGCCTGGAAGGATCACGATTATCACAAGAATGGGATCAGAGAATATG
FD565895       <-- ATAAGCCTGGAAGGATCACGATTATCACAAGAATGGGAGCAGAGAATATG
EY912131       <-- ATAAGCCTGGAAGGATCACGATTATCACAAGAATGGGAGCAGAGAATATG
EY944248       <-- ATAAGCCTGGAAGGATCACGATTATCACAAGAATGGGAGCAGAGAATATG
FY440517       <-- ..................................................
EY948569       --> ..................................................
FY430498       --> ..................................................
FD564058       --> ..................................................
FY443461       --> ATAAGCCTGGAAGGATCACGATTATCACAAGAATGGGAGCAGAGAATATG
FY443632       --> ATAAGCCTGGAAGGATCACGATTATCACAAGAATGGGAGCAGAGAATATG
EX762257       --> ATAAGCCTGGAAGGATCACGATTATCACAAGAATGGGATCAGAGAATATG
EY916449       --> ATAAGCCTGGAAGGATCACGATTATCACAAGAATGGGAGCAGAGAATATG
FD533971       --> ATAAGCCTGGAAGGATCACGATTATCACAAGAATGGGAGCAGAGAATATG
FD561846       --> ATAAGCCTGGAAGGATCACGATTATCACAAGAATGGGAGCAGAGAATATG

               1251   -   1301
UN18739        --> AGAGTGAAGCTTCCTCATTTGATCAGAGCTGTGAGACGTGCTGGACAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- AGAGTGAAGCTTCCTCATTTGATCAGAGCTGTGAGACGTGCTGGACAGAT
FD565895       <-- AGAGTGAAGCTTCCTCATTTGATCAGAGCTGTGAGACGTGCTGGACAGAT
EY912131       <-- AGAGTGAAGCTTCCTCATTTGATCAGAGCTGTGAGACGTGCTGGACAGAT
EY944248       <-- AGAGTGAAGCTTCCTCATTTGATCAGAGCTGTGAGACGTGCTGGACAGAT
FY440517       <-- ...............................TGAGACGTGCTGGACAGAT
EY948569       --> ..................................................
FY430498       --> ..................................................
FD564058       --> ..................................................
FY443461       --> AGAGTGAAGCTTCCTCATTTGATCAGAGCTGTGAGACGTGCT........
FY443632       --> AGAGTGAAGCTTCCTCATTTGATC..........................
EX762257       --> AGAGTGAAGCTTCCTCATTTGATCAGAGCTGTGAGACGTGCTGGACAGAT
EY916449       --> AGAGTGAAGCTTCCTCATTTGATCAGAGCTGTGAGACGTGCTGGACAGAT
FD533971       --> AGAGTGAAGCTTCCTCATTTGATCAGAGCTGTGAGACGTGCTGGACAGAT
FD561846       --> AGAGTGAAGCTTCCTCATTTGATCAGAGCTGTGAGACGTGCTGGACAGAT

               1301   -   1351
UN18739        --> TGTGACTTGGGTCAGTGATCCAATGCATGGAAACACCATCAAGGCTCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- TGTGACTTGGGTCAGTGATCCAATGCACGGAAACACCATTAAGGCTCCTT
FD565895       <-- TGTGACTTGGGTCAGTGATCCAATGCATGGAAACACCATCAAGGCTCCTT
EY912131       <-- TGTGACTTGGGTCAGTGATCCAATGCATGGAAACACCATCAAGGCTCCTT
EY944248       <-- TGTGACTTGGGTCAGTGATCCAATGCACGGAAACACCATTAAGGCTCCTT
FY440517       <-- TGTGACTTGGGTCAGTGATCCAATGCACGGAAACACCATTAAGGCTCCTT
EY948569       --> ..................................................
FY430498       --> ..................................................
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> TGTGACTTGGGTCAGTGATCCAATGCACGGAAACACCATTAAAGCTCCTT
EY916449       --> TGTGACTTGGGTCAGTGATCCAATGCATGGAAACACCATCAAG-CTCCTT
FD533971       --> TGTGACTTGGGTCAGTGATCCAATGCATGGAAACACCATCAAGGCTCCTT
FD561846       --> TGTGACTTGGGTCAGTGATCCAATGCATGGAAACACCATCAAGGCTCCTT

               1351   -   1401
UN18739        --> GTGGTCTCAAGACTCGTCCCTTTGACTCCATCTTGGCTGAAGTGAGAGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- GTGGTCTAAAGACTCGTCCCTTTGACTCCATCTTGGCTGAAGTGAGAGCG
FD565895       <-- GTGGTCTCAAGACTCGTCCCTTTGACTCCATCTTGGCTGAAGTGAGAGCG
EY912131       <-- GTGGTCTCAAGACTCGTCCCTTTGACTCCATCTTGGCTGAAGTGAGAGCG
EY944248       <-- GTGGTCTAAAGACTCGTCCCTTTGACTCCATCTTGGCTGAAGTGAGAGCG
FY440517       <-- GTGGTCTAAAGACTCGTCCCTTTGACTCCATCTTGGCTGAAGTGAGAGCG
EY948569       --> ..................................................
FY430498       --> ..................................................
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> GTGGTCTAAAGACTCGTCCCTTTGACTCCATCTTGGCTGAAGTGAGAGCG
EY916449       --> GTGGTCTCAAGACTCGTCCCTTTGACTCCATCTTGGCTGAAGTGAGAGCG
FD533971       --> GTGGTCTCAAGACTCGTCCCTTTGACTCCATCTTGGCTGAAGTGAGAGCG
FD561846       --> GTGGTCTCAAGACTCGTCCCTTTGACTCCATCTTGGCTGAAGTGAGAGCG

               1401   -   1451
UN18739        --> TTCTTCGACGTGCACGAGCAAGAGGGAAGCCACCCGGGAGGTGTTCACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- TTTTTCGACGTGCACGAGCAAGAGGGAAGCCACCCGGGAGGTGTTCACCT
FD565895       <-- TTTTTCGACGTGCACGAGCAAGAGGGAAGCCACCCGGGAGGTGTTCACCT
EY912131       <-- TTCTTCGACGTGCACGAGCAAGAGGGAAGCCACCCGGGAGGTGTTCACCT
EY944248       <-- TTCTTCGACGTGCACGAGCAAGAGGGAAGCCACCCGGGAGGTGTTCACCT
FY440517       <-- TTTTTCGACGTGCACGAGCAAGAGGGAAGCCACCCGGGAGGTGTTCACCT
EY948569       --> ..................................................
FY430498       --> ..................................................
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> TTCTTCGACGTGCACGAGCA-GAGGGAAGCCA..................
EY916449       --> TTCTTCGACGTGCACGAGCA-GAGGGA-GCCACCCG..............
FD533971       --> TTCTTCGACGTGCACGAGCAAGAGGGAAGCCACCCGGGAGGTGTTCACCT
FD561846       --> TTCTTCGACGTGCACGAGCAAGAGGGAAGCCACCCGGGAGGTGTTCACCT

               1451   -   1501
UN18739        --> AGAGATGACAGGTCAGAACGTGACCGAGTGCATCGGTGGTTCACGCACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- AGAGATGACAGGTCAGAACGTGACCGAGTGCATCGGTGGTTCACGCACAG
FD565895       <-- AGAGATGACAGGTCAGAACGTGACCGAGTGCATCGGTGGTTCACGCACAG
EY912131       <-- AGAGATGACAGGTCAGAACGTGACTGAGTGCATCGGTGGTTCACGCACAG
EY944248       <-- AGAGATGACAGGTCAGAACGTGACTGAGTGCATCGGTGGTTCACGCACAG
FY440517       <-- AGAGATGACAGGTCAGAACGTGACCGAGTGCATCGGTGGTTCACGCACAG
EY948569       --> ..................................................
FY430498       --> ..................................................
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> AGAGATGACAGGTCAGAACGTGACCGAGTGCATCGGTGGTTCACGCACAG
FD561846       --> AGAGATGACAGGTCAGAACGTGACCGAGTGCATCGGTGGTTCACGCACAG

               1501   -   1551
UN18739        --> TCACGTTCGATGACTTGGGGTCGCGATACCACACGCACTGTGACCCTCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- TCACGTTCGATGACTTGGGGTCGCGATACCACACGCACTGTGACCCTCGC
FD565895       <-- TCACTTTCGATTACTTGGGGTCGCGATACCACACGCACTGTGACCCTCGC
EY912131       <-- TCACGTTCGATGACTTGGGGTCGCGATACCACACGCACTGTGACCCTCGC
EY944248       <-- TCACGTTCGATGACTTGGGGTCGCGATACCACACGCACTGTGACCCTCGC
FY440517       <-- TCACGTTCGATGACTTGGGGTCGCGATACCACACGCACTGTGACCCTCGC
EY948569       --> ..................................................
FY430498       --> ..................................................
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> TCACGTTCGATGACTTGGGGTCGCGATACCACACGCACTGTGACC-TCGC
FD561846       --> TCACTTTCGATTACTTGGGGTCGCGATACCACACGCACTGTGACCCTCGC

               1551   -   1601
UN18739        --> CTCAACGCCTCGCAGTCTCTCGAGCTCTCTTTCATCATCGCTGAACGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- CTCAACGCCTCGCAGTCTCTCGAGCTCTCTTTCATCATCGCTGAACGCCT
FD565895       <-- CTCAACGCCTCGCAGTCTCTCGAGCTCTCTTTCATCATCGCTGAACGCCT
EY912131       <-- CTCAACGCCTCGCAGTCTCTCGAGCTCTCTTTCATCATCGCTGAACGCCT
EY944248       <-- CTCAACGCCTCGCAGTCTCTCGAGCTCTCTTTCATCATCGCTGAACGCCT
FY440517       <-- CTCAACGCCTCGCAGTCTCTCGAGCTCTCTTTCATCATCGCTGAACGCCT
EY948569       --> ..................................................
FY430498       --> ..................................................
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> CTCAACGCCTCGCAGTCTCTCGAGCTCTCTTTCATCATCGCTGAACGCCT
FD561846       --> CTCAACGCCTCGCAGTCTCTCGAGCTCTCTTTCATCATCGCTGAACGCCT

               1601   -   1651
UN18739        --> TAGAAAGAGACGCATCAAGTCCCAACAGGCTTTTTCTATCTAATTCAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- TAGAAAGAGACGCATCAAGTCCCAACAGGCTTTTTCTATCTAATTCAGAC
FD565895       <-- TAGAAAGAGACGCATCAAGTCCCAACAGGCTTTTTCTATCTAATTCAGAC
EY912131       <-- TAGAAAGAGACGCATCAAGTCCCAACAGGCTTTTTCTATCTAATTCAGAC
EY944248       <-- TAGAAAGAGACGCATCAAGTCCCAACAGGCTTTTTCTATCTAATTCAGAC
FY440517       <-- TAGAAAGAGACGCATCAAGTCCCAACAGGCTTTTTCTATCTAATTCAGAC
EY948569       --> ..................................................
FY430498       --> ..................................................
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> TAGAAAGAGACGCATCAAGTC.............................
FD561846       --> TAGAAAGAGACGCATCAAGTCCCAACAGGCTTTTTCTATCTAATTCAGAC

               1651   -   1701
UN18739        --> ATGTGTTGTGTTATATCTTTATAATAAATGTTTGCGTGTGTGAACTCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ATGTGTTGTGTTATATCTTTATAATAAATGTTTGCGTGTGTGAACTCAAT
FD565895       <-- ATGTGTTGTGTTATATCTTTATAATAAATGTTTGCGTGTGTGAACTCAAT
EY912131       <-- ATGTGTTGTGTTATATCTTTATAATAAATGTTTGCGTGTGTGAACTCAAT
EY944248       <-- ATGTGTTGTGTTATATCTTTATAATAAATGTTTGCGTGTGTGAACTCAAT
FY440517       <-- ATGTGTTGTGTTATATCTTTATAATAAATGTTTGCGTGTGTGAACTCAAT
EY948569       --> ..................................................
FY430498       --> ..................................................
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> ..................................................
FD561846       --> ATGTGTTGTGTTATATCTTTATAATAAATGTTTGCGTGTGTGAACTCAAT

               1701   -   1751
UN18739        --> ACGGTTACGGTCTCGTTTATATTTGATTCAGATGCTGGGTCAACAGAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ACGGTTACGGTCTCGTTTATATTTGATTCAGATGCTGGGTCAACAGAACG
FD565895       <-- ACGGTTACGGTCTCGTTTATATTTGATTCTGATGCTGGGTCAACAGAACG
EY912131       <-- ACGGTTACGGTCTCGTTTATATTTGATTCAGATGCTGGGTCAACAGAACG
EY944248       <-- ACGGTTACGGTCTCGTTTATATTTGATTCAGATGCTGGGTCAACAGAACG
FY440517       <-- ACGGTTACGGTCTCGTTTATATTTGATTCAGATGCTGGGTCAACAGAACG
EY948569       --> ..................................................
FY430498       --> ..................................................
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> ..................................................
FD561846       --> ACGGTTACGGTCTCGTTTATATTTGATTCTGATGCTGGGTCAACAGAACG

               1751   -   1801
UN18739        --> CGTAAGGTTTTGTTTTATCGTTGTTAATGAGTTTTATTATTTCCATTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- CGTAAGGTTTTGTTTTATCGTTGTTAATGAGTTTTATTATTTCCATTTTG
FD565895       <-- CGTAAGGTTTTGTTTTATCGTTGTTAATGAGTTTTATTATTTCCATTTTG
EY912131       <-- CGTAAGGTTTTGTTTTATCGTTGTTAATGAGTTTTATTATTTCCATTTTG
EY944248       <-- CGTAAGGTTTTGTTTTATCGTTGTTGATGAGTTTTATTATTTCCATTTTG
FY440517       <-- CGTAAGGTTTTGTTTTATCGTTGTTAATGAGTTTTATTATTTCCATTTTG
EY948569       --> ..................................................
FY430498       --> ..................................................
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> ..................................................
FD561846       --> ..................................................

               1801   -   1851
UN18739        --> GATTTACTAAAATCATTGAACGTTGGATTTTTAATTCTACGAAGAGGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- GATTTACTAAAATCATTGAACGTTGG........................
FD565895       <-- GATTTACT..........................................
EY912131       <-- GATTTACTAAAATCATTGAACGTTGGATTTTTAATTCTACGAAGAG-TGT
EY944248       <-- GATTTACT..........................................
FY440517       <-- GATTTACTAAAATCATTGAACGTTGGATTTTTAATTCTACGAAGAGGTGT
EY948569       --> ..................................................
FY430498       --> ..................................................
FD564058       --> ..................................................
FY443461       --> ..................................................
FY443632       --> ..................................................
EX762257       --> ..................................................
EY916449       --> ..................................................
FD533971       --> ..................................................
FD561846       --> ..................................................

               1851   -   1901
UN18739        --> GTATTTATAATACTAGTGATAATGCCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766561       <-- ..............................
FD565895       <-- ..............................
EY912131       <-- GTATTTATAATACc................
EY944248       <-- ..............................
FY440517       <-- GTATTTATAATACTAGTGATAATGCCTTCT
EY948569       --> ..............................
FY430498       --> ..............................
FD564058       --> ..............................
FY443461       --> ..............................
FY443632       --> ..............................
EX762257       --> ..............................
EY916449       --> ..............................
FD533971       --> ..............................
FD561846       --> ..............................