Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN18873

               1      -     51
UN18873        --> GGGCCAAAGAGGGAATCGAGAGGAGAGACTACGATTCACTTACGAGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- ........................ggGACTACGATTCACTTACGAGAAGA
EV565200       <-- ..................................................
EV565199       <-- ..................................................
FD542823       <-- ..................................................
EX750143       <-- ..................................................
EY905315       <-- ..................................................
FD571139       --> GGGCCAAAGAGGGAATCGAGAGGAGAGACTACGATTCACTTACGAGAAGA
EX898285       --> ..........cGGAATCGAGAGGAGAGACTACGATTCACTTACGAGAAGA
EY906938       --> ........................ggGACTACGATTCACTTACGAGAAGA
EY937745       --> ........................ggGACTACGATTCACTTACGAGAAGA
EX753679       --> ..................................................
EV570517       --> ..................................................
EX750971       --> ..................................................
EV570516       --> ..................................................
FD538796       --> ..................................................

               51     -    101
UN18873        --> TTTCTCACAGGGAAAGAAGCTATGGACTTGGCTCTTCATTTTCCTTCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- TTTCTCACAGGGAAAGAAGCTATGGACTTGGCTCTTCATTTTCCTTCGTT
EV565200       <-- ..................................................
EV565199       <-- ..................................................
FD542823       <-- ..................................................
EX750143       <-- ..................................................
EY905315       <-- ..................................................
FD571139       --> TTTCTCACAGGGAAAGAAGCTATGGACTTGGCTCTTCATTTTCCTTCGTT
EX898285       --> TTTCTCACAGGGAAAGAAGCTATGGACTTGGCTCTTCATTTTCCTTCGTT
EY906938       --> TTTCTCACAGGGAAAGAAGCTATGGACTTGGCTCTTCATTTTCCTTCGTT
EY937745       --> TTTCTCACAGGGAAAGAAGCTATGGACTTGGCTCTTCATTTTCCTTCGTT
EX753679       --> ..................................................
EV570517       --> ..................................................
EX750971       --> ..................................................
EV570516       --> ..................................................
FD538796       --> ..................................................

               101    -    151
UN18873        --> GATCAAACAAGGATTCACCAGAGCCAATCATCTTCCTGTTCGAGATTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- GATCAAACAAGGATTCACCAGAGCCAATCATCTTCCTGTTCGAGATTCTC
EV565200       <-- ..................................................
EV565199       <-- ..................................................
FD542823       <-- ..................................................
EX750143       <-- ..................................................
EY905315       <-- ..................................................
FD571139       --> GATCAAACAAGGATTCACCAGAGCCAATCATCTTCCTGTTCGAGATTCTC
EX898285       --> GATCAAACAAGGATTCACCAGAGTCAATCATCTTCCTGTTCGAGATTCTC
EY906938       --> GATCAAACAAGGATTCACCAGAGCCAATCATCTTCCTGTTCGAGATTCTC
EY937745       --> GATCAAACAAGGATTCACCAGAGCCAATCATCTTCCTGTTCGAGATTCTC
EX753679       --> ..................................................
EV570517       --> ..................................................
EX750971       --> ..................................................
EV570516       --> ..................................................
FD538796       --> ..................................................

               151    -    201
UN18873        --> TTTCAACAAGCTTTGGGCAGAGTTTTTCGAGAACAGCGTTTGATGGTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- TTTCAACAAGCTTTGGGCAGAGTTTTTCGAGAACAGCGTTTGATGGTGAT
EV565200       <-- ..................................................
EV565199       <-- ..................................................
FD542823       <-- ..................................................
EX750143       <-- ..................................................
EY905315       <-- ..................................................
FD571139       --> TTTCAACAAGCTTTGGGCAGAGTTTTTCGAGAACAGCGTTTGATGGTGAT
EX898285       --> TTTCAACAAGCATTGGGCAGAGTTTTTCGAGAACAGCGTTTGATGGTGAT
EY906938       --> TTTCAACAAGCTTTGGGCAGAGTTTTTCGAGAACAGCGTTTGATGGTGAT
EY937745       --> TTTCAACAAGCATTGGGCAGAGTTTTTCGAGAATAGCGTTTGATGGTGAT
EX753679       --> ..................................................
EV570517       --> ..................................................
EX750971       --> ..................................................
EV570516       --> ..................................................
FD538796       --> ..................................................

               201    -    251
UN18873        --> AGAAGAAGCTGGCCTGGAGAGAAGGCTTGGTGGTCTTCCTCCCTAACTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- AGAAGAAGCTGGCCTGGAGAGAAGGCTTGGTGGTCTTCCTCCCTAACTAG
EV565200       <-- ..................................................
EV565199       <-- ..................................................
FD542823       <-- ..................................................
EX750143       <-- ..................................................
EY905315       <-- ..................................................
FD571139       --> ATAAGAAGCTGGCCTGGAGAGAAGGCTTGGTGGTCTTCCTCCCTAACTAG
EX898285       --> AGAAGAAGCTGGCCTGGAGAGAAGGCTTGGTGGTCTTCCTCCCTAACTAG
EY906938       --> AGAAGAAGCTGGCCTGGAGAGAAGGCTTGGTGGTCTTCCTCCCTAACTAG
EY937745       --> AGAAGAAGCTGGCCTGGAGAGAAGGCTTGGTGGTCTTCCTCCCTAACTAG
EX753679       --> ..................................................
EV570517       --> ..................................................
EX750971       --> ..................................................
EV570516       --> ..................................................
FD538796       --> ..................................................

               251    -    301
UN18873        --> GAGATCCAAGAAAGGATCTGTTGTTTGTTGCAAGAATCCGTCTGATGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- GAGATCCAAGAAAGGATCTGTTGTTTGTTGCAAGAATCCGTCTGATGAAC
EV565200       <-- ..................................................
EV565199       <-- ..................................................
FD542823       <-- ..................................................
EX750143       <-- ..................................................
EY905315       <-- ..................................................
FD571139       --> GAGATCCAAGAAAGGATCTGTTGTTTGTTGCAAGAATCCGTCTGATGAAC
EX898285       --> GAGATCCAAGAAAGGATCTGTTGTTTGTTGCAGGAATCCGTCTGATGAAC
EY906938       --> GAGATCCAAGAAAGGATCTGTTGTTTGTTGCAAGAATCCGTCTGATGAAC
EY937745       --> GAGATCCAAGAAAGGATCTGTTGTTTGTTGCAAGAATCCGTCTGATGAAC
EX753679       --> ..................................................
EV570517       --> ..................................................
EX750971       --> ..................................................
EV570516       --> ..................................................
FD538796       --> ..................................................

               301    -    351
UN18873        --> AGAGCTCAGACTCGAGTAAATCGAAGCAAGAGGAGATCATTGCTCTCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- AGAGCTCAGACTCGAGTAAATCGAAGCAAGAGGAGATCATTGCTCTCTTA
EV565200       <-- ..................................................
EV565199       <-- ..................................................
FD542823       <-- ..................................................
EX750143       <-- ..................................................
EY905315       <-- ..................................................
FD571139       --> AGAGCTCAGACTCGAGTAAATCGAAGCAAGAGGAGATCATTGCTCTCTTA
EX898285       --> AGAGCTCACACT......................................
EY906938       --> AGAGCTCAGACTCGAGTAAATCGAAGCAAGAGGAGATCATTGCTCTCTTA
EY937745       --> AGAGCTCAGACTCGAGTAAATCGAAGCAAGAGGAGATCATTGCTTTCTTA
EX753679       --> ..................................................
EV570517       --> ..................................................
EX750971       --> ..................................................
EV570516       --> ..................................................
FD538796       --> ..................................................

               351    -    401
UN18873        --> AGTCGGATTCAAGCTTCAATCTCCAAAGGAGAGTCTCAGGGAGCTGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- AGTCGGATTCAAGCTTCAATCTCCAAAGGAGAGTCTCAGGGAGCTGATGA
EV565200       <-- ..................................................
EV565199       <-- ..................................................
FD542823       <-- ..................................................
EX750143       <-- ..................................................
EY905315       <-- ..................................................
FD571139       --> AGTCGGATTCAAGCTTCAATCTCCAAAGGAGAGTCTCAGGGAGCTGATGA
EX898285       --> ..................................................
EY906938       --> AGTCGGATTCAAGCTTCAATCTCCAAAGGAGAGTCTCAGGGAGCTGATGA
EY937745       --> AGTCGGATTCAAGCTTCAATCTCCAAAGGAGAGTCTCAGGGAGCTGATGA
EX753679       --> ..................................................
EV570517       --> ..................................................
EX750971       --> ..................................................
EV570516       --> ..................................................
FD538796       --> ..................................................

               401    -    451
UN18873        --> GAAGAACAGCAATGACTCTTGTGGGAATGGGTCGCTGAGTAAAGCTATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- GAAGAACAGCAATGACTCTTGTGGGAATGGGTCGCTGAGTAAAGCTATTC
EV565200       <-- ..................................................
EV565199       <-- ..................................................
FD542823       <-- ..................................................
EX750143       <-- ..................................................
EY905315       <-- ..................................................
FD571139       --> GAAGAACAGCAATGACTCTTGTGGGAATGGGTCGCTGAGTAAAGCTATTC
EX898285       --> ..................................................
EY906938       --> GAAGAACAGCAATGACTCTTGTGGGAATGGGTCGCTGAGTAAAGCTATTC
EY937745       --> GAAGAACAGCAATGACTCTTGTGGGAATGGGTCGCTGAGTAAAGCTATTC
EX753679       --> ..................................................
EV570517       --> ..................................................
EX750971       --> ..................................................
EV570516       --> ..................................................
FD538796       --> ..................................................

               451    -    501
UN18873        --> TTGACGTTCTTGAGAAACCAAGAGAGAAAACTGAAGGAGATGCTGGTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- TTGACGTTCTTGAGAAACCAAGAGAGAAAACTGAAGGAGATGCTGGTCTA
EV565200       <-- ..................................................
EV565199       <-- ..................................................
FD542823       <-- ..................................................
EX750143       <-- ..................................................
EY905315       <-- ..................................................
FD571139       --> TTGACGTTCTTGAGAAACCAAGAGAGAAAACTGAAGGAGATGCTGGTCTA
EX898285       --> ..................................................
EY906938       --> TTGACGTTCTTGAGAAACCAAGAGAGAAAACTGAAGGAGATGCTGGTCTA
EY937745       --> TTGACGTTCTTGAGAAACCAAGAGAGAAAACTGAAGGAGATGCTGGTCTA
EX753679       --> ..................................................
EV570517       --> ..................................................
EX750971       --> ..................................................
EV570516       --> ..................................................
FD538796       --> ..................................................

               501    -    551
UN18873        --> AGGAAAGAGCCACCTAAGAGACAAGTAGCTCGGCCACCGTTTAGTTTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- AGGAAAGAGCCACCTAAGAGACAAGTAGCTCGGCCACCGTTTAGTTTTGC
EV565200       <-- ..................................................
EV565199       <-- ..................................................
FD542823       <-- ..................................................
EX750143       <-- ..................................................
EY905315       <-- ..................................................
FD571139       --> AGGAAAGAGCCACCTAAGAGACAAGTAGCTCGGCCACCGTCTAGTTTTGC
EX898285       --> ..................................................
EY906938       --> AGGAAAGAGCCACCTAAGAGACAAGTAGCTCGGCCACCGTTTAGTTTTGC
EY937745       --> AGGAAAGAGCCACCTAAGAGACAAGTAGCTCGGCCACCGTCTAGTTTTGC
EX753679       --> ..................................................
EV570517       --> ..................................................
EX750971       --> ..................................................
EV570516       --> ..................................................
FD538796       --> ..................................................

               551    -    601
UN18873        --> CAAGAGAGCTCCTACTAGACCATCTGCTTCAGATCCAAGAGAGCTCAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- CAAGAGAGCTCCTACTAGACCATCTGCTTCAGATCCAAGAGAGCTCAAAG
EV565200       <-- ..................................................
EV565199       <-- ..................................................
FD542823       <-- ..................................................
EX750143       <-- ..................................................
EY905315       <-- ..................................................
FD571139       --> CAAGAGAGCTCCTACTAGACCATCTGCTTCAGA.................
EX898285       --> ..................................................
EY906938       --> CAAGAGAGCTCCTACTAGACCATCTGCTTCAGATCCAAGAGAGCTCAAAG
EY937745       --> CAAGAGAGCTCCTACTAGACCATCTGCTTCAGATCCAAGAGAGCTCAAAG
EX753679       --> ..................................................
EV570517       --> ..................................................
EX750971       --> ..................................................
EV570516       --> ..................................................
FD538796       --> ..................................................

               601    -    651
UN18873        --> AAGTTGCAAAGAACAGAGGACTCAAAGGATACTCAAAGCTAAAGAAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- AAGTTGCAAAGAACAGAGGACTCAAAGGATACTCAAAGCTAAAGAAGAGT
EV565200       <-- ..................................................
EV565199       <-- ..................................................
FD542823       <-- ..................................................
EX750143       <-- ..................................................
EY905315       <-- ..................................................
FD571139       --> ..................................................
EX898285       --> ..................................................
EY906938       --> AAGTTGCAAAGAACAGAGGACTCAAAGGATACTCAAAGCTAAAGAAGAGT
EY937745       --> AAGTTGCAAAGAACAGAGGGCTCAAAG-ATACTCAAAGCTAAAGAAGAGT
EX753679       --> ..................................................
EV570517       --> ..................................................
EX750971       --> ..................................................
EV570516       --> ..................................................
FD538796       --> ..................................................

               651    -    701
UN18873        --> GAGATTCTGGAGCTACTCAGATCCTCCTAATTTTAATGTTCAGTCCACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- GAGATTCTGGAGCTACTCAGATCCTCCTAATTTTAATGTTCAGTCCACAT
EV565200       <-- ..................................................
EV565199       <-- ..................................................
FD542823       <-- ..................................................
EX750143       <-- ..................................................
EY905315       <-- ..................................................
FD571139       --> ..................................................
EX898285       --> ..................................................
EY906938       --> GAGATTCTGGAGCTACTCAGATCCTCCTAATTTTAATGTTCAGTCCACAT
EY937745       --> GAGATTCTGGAGCTAATCAGATCCTCCTGAATTTAAATCTCAGTCCACAT
EX753679       --> ..................................................
EV570517       --> ..................................................
EX750971       --> ..................................................
EV570516       --> ..................................................
FD538796       --> ..................................................

               701    -    751
UN18873        --> TCTCTCTGCTATGTAAATTAGAAACACAGATATGGCTTGGACTTGTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- TCTCTCTGCTATGTAAATTAGAAACACAGATATGGCTTGGACTTGTTTTT
EV565200       <-- ..................................................
EV565199       <-- ..................................................
FD542823       <-- ..................................................
EX750143       <-- ..................................................
EY905315       <-- ..................................................
FD571139       --> ..................................................
EX898285       --> ..................................................
EY906938       --> TCTCTCTGCTATGTAAATTAGAAACACAGATATGGCTTGGACTTGT....
EY937745       --> TCTCTCTGCTATGTAAATTAGAg...........................
EX753679       --> .................................GGCTTGGACTTGTTTTT
EV570517       --> ..................................................
EX750971       --> ..................................................
EV570516       --> ..................................................
FD538796       --> ..................................................

               751    -    801
UN18873        --> AAAATAGATAAAGAGTTT-AAAATTGAAAACGATAACCTCCAAAAATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- AAAATAGATAAAGAGTTT-AAAATTGAAAACGc.................
EV565200       <-- .................T-AAAATTGAAAACGATAACCTCCAAAAATTGT
EV565199       <-- ..............................CGATAACCTCCAAAAATTGT
FD542823       <-- ....................................CCTCCAAAA-TTGT
EX750143       <-- ..................................................
EY905315       <-- ..................................................
FD571139       --> ..................................................
EX898285       --> ..................................................
EY906938       --> ..................................................
EY937745       --> ..................................................
EX753679       --> AAAATAGATAAAGAGTTTTAAAATTGAAAACGATAACCTCCAAAAATTGT
EV570517       --> ............agtTTT-AAAATTGAAAACGATAACCTCCAAAAATTGT
EX750971       --> .................T-AAAACTGAAAACGATAACCTCCAAAAATTGT
EV570516       --> .........................GAAAACGATAACCTCCAAAAATTGT
FD538796       --> ....................................CCTCCAAAAATTGT

               801    -    851
UN18873        --> TCATATCTCGAGAGTACTTAA--GGATTCTACCACAACAAGAAAGACTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565200       <-- TCATATCTCGAGAGTACTTAA--GGATTCTACCACAACAAGAAAGACTTA  Raphanus raphanistrum subsp. landra
EV565199       <-- TCATATCTCGAGAGTACTTAA--GGATTCTACCACAACAAGAAAGACTTA  Raphanus raphanistrum subsp. landra
FD542823       <-- TCATATCTCGAGAGTACTTAAAAGGATTCTACCACAACAAGAAA-ACTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750143       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY905315       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571139       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX898285       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY906938       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937745       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX753679       --> TCATATCTCGAGAGTACTTAA--GGATTCTACCACAACAAGAAAGACTTA  Raphanus raphanistrum subsp. maritimus
EV570517       --> TCATATCTCGAGAGTACTTAA--GGATTCTACCACAACAAGAAAGACTTA  Raphanus raphanistrum subsp. landra
EX750971       --> TCATATCTCGAGAGTACTTAAAAGGATTCTACCACAACAAGAAAGCCTTA  Raphanus raphanistrum subsp. maritimus
EV570516       --> TCATATCTCGAGAGTACTTAA--GGATTCTACCACAACAAGAAAGACTTA  Raphanus raphanistrum subsp. landra
FD538796       --> TCATATCTCGAGAGTACTTAAAAGGATTCTACCACAACAAGAAAACCTTA  Raphanus raphanistrum subsp. raphanistrum (MS)

               851    -    901
UN18873        --> TCATC---CAGAATCGCAAATTATAACAACTTGAAACAGAGCCAAAACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565200       <-- T---C---AAGAATCGCAAATTATAACAACTTGAAACAGAGCCAAAACAC  Raphanus raphanistrum subsp. landra
EV565199       <-- T---C---AAGAATCGCAAATTATAACAACTTGAAACAGAGCCAAAACAC  Raphanus raphanistrum subsp. landra
FD542823       <-- TCATC---CAGATTCGCAAATTATAACAACTTGAAACAGAGCCAAAACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750143       <-- ........................AACAACTTGAAACAGAGCCAAAACAC  Raphanus raphanistrum subsp. maritimus
EY905315       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571139       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX898285       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY906938       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937745       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX753679       --> TCATC---CAGAATCGCAAATTATAACAACTTGAAACAGAGCCAAAACAC  Raphanus raphanistrum subsp. maritimus
EV570517       --> TCA------AGAATCGCAAATTATAACAACTTGAAACAGAGCCAAAACAC  Raphanus raphanistrum subsp. landra
EX750971       --> TCATCATCCAGAATCGCAAATTATAACAACTT-AAACAGAGCCAAA-CAC  Raphanus raphanistrum subsp. maritimus
EV570516       --> TCA------AGAATCGCAAATTATAACAACTTGAAACAGAGCCAAAACAC  Raphanus raphanistrum subsp. landra
FD538796       --> TCATC---CAGATTCGCAAATTATAACAACTTGAAACAGAGCCAAAACAC  Raphanus raphanistrum subsp. raphanistrum (MS)

               901    -    951
UN18873        --> CA-CAAAACAAAATGAAACTCTTCAACCGGTGATGTTCTGAGACTTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565200       <-- CA-CAAAACAAAATGAAACTCTTCAACCGGTGATGT--TGAGACTTGTTG  Raphanus raphanistrum subsp. landra
EV565199       <-- CAACAAAACAAAATGAAACTCTTCAACCGGTGATGT--TGAGACTTGTTG  Raphanus raphanistrum subsp. landra
FD542823       <-- CA-CAAAACAAAATGAAACTCTTCAACCGGTGATGTTCTGAGACTTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750143       <-- CA-CAAAACAAAATGAAACTCTTCAACCGGTGATGTTCTGAGACTTGTTG  Raphanus raphanistrum subsp. maritimus
EY905315       <-- ................AACTCTTCAACCGGTGATGTTCTGAGACTTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571139       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX898285       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY906938       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937745       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX753679       --> CA-CAAAACAAAATGAAACTCTTCAACCGGTGATGTTCTGAGACTTGTTG  Raphanus raphanistrum subsp. maritimus
EV570517       --> CA-CAAAACAAAATGAAACTCTTCAACCGGTGATGTT--GAGACTTGTTG  Raphanus raphanistrum subsp. landra
EX750971       --> GA-CAAAACAAAACAAAACTCTTCAACCAGTGATGTTCTGAGACTTGTTG  Raphanus raphanistrum subsp. maritimus
EV570516       --> CA-CAAAACAAAATGAAACTCTTCAACCGGTGATGTT--GAGACTTGTTG  Raphanus raphanistrum subsp. landra
FD538796       --> CA-CAAAACAAAATGAAACTCTTCAACCGGTGATGTTCTGAGACTTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)

               951    -   1001
UN18873        --> AGGATAACACCTTCATACTTAACTTGGAACCACTTCATGGCATCATCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- ..................................................
EV565200       <-- AGGATAACACCTTCATACTTAACTTGGAACCACTTCATGGCATCATCCTT
EV565199       <-- AGGATAACACCTTCATACTTAACTTGGAACCACTTCATGGCATCATCCTT
FD542823       <-- AGGATAACACCTTCATACTTAACTTGGAACCACTTCATGGCATCATCCTT
EX750143       <-- AGGATAACACCTTCATACTTAACTTGGAACCACTTCATGGCATCATCCTT
EY905315       <-- AGGATAACACCTTCATACTTAACTTGGAACCACTTCATGGCATCATCCTT
FD571139       --> ..................................................
EX898285       --> ..................................................
EY906938       --> ..................................................
EY937745       --> ..................................................
EX753679       --> AGGATAACACCTTCATACTTAACTTGGAACCACTTCATGGCATCATCCTT
EV570517       --> AGGATAACACCTTCATACTTAACTTGGAACCACTTCATGGCATCATCCTT
EX750971       --> AGGATAACACCTTCATACTTAACTTGGAACCACTTCATGGCATCATCCTT
EV570516       --> AGGATAACACCTTCATACTTAACTTGGAACCACTTCATGGCATCATCCTT
FD538796       --> AGGATAACACCTTCATACTTAACTTGGAACCACTTCATGGCATCATCCTT

               1001   -   1051
UN18873        --> TGTAACCCTATGTTGAATCCCAACGCGAGTCTTGCACCTACGGCGACGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- ..................................................
EV565200       <-- TGTAACCCTATGTTGAATCCCAACGCGAGTCTTGCACCTACGGCGACGTG
EV565199       <-- TGTAACCCTATGTTGAATCCCAACGCGAGTCTTGCAC.............
FD542823       <-- TGTAACCCTATGTTGAATCCCAACGCGAGTCTTGCACCTACGGCGACGTG
EX750143       <-- TGTAACCCTATGTTGAATCCCAACGCGAGTCTTGCACCTACGGCGACGTG
EY905315       <-- TGTAACCCTATGTTGAATCCCAACGCGAGTCTTGCACCTACGGCGACGTG
FD571139       --> ..................................................
EX898285       --> ..................................................
EY906938       --> ..................................................
EY937745       --> ..................................................
EX753679       --> TGTAACCCTATGTTGAATCCCAACGCGAGTCTTGCACCTACGGCGACGTG
EV570517       --> TGTAACCCTATGTTGAATCCCAACGCGAGTCTTGCACCTACGGCGACGTG
EX750971       --> TGTAACCCTATGTTGAATCCCAACGCGAGTCTTGCACCTACGGCGACGTG
EV570516       --> TGTAACCCTATGTTGAATCCCAACGCGAGTCTTGCACCTACGGCGACGTG
FD538796       --> TGTAACCCTATGTTGAATCCCAACGCGAGTCTTGCACCTACGGCGACGTG

               1051   -   1101
UN18873        --> CAACACGGTATCCAGGACGCTCAAGAACAACGTAGAAGTCCATTCCATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- ..................................................
EV565200       <-- CAACACGGTATCCAGGACGCTCAAGAACAACGTAGAAGTCCATTCCATAG
EV565199       <-- ..................................................
FD542823       <-- CAACACGGTATCCAGGACGCTCAAGAACAACGTAGAAGTCCATTCCATAG
EX750143       <-- CAACACGGTATCCAGGACGCTCAAGAACAACGTAGAAGTCCATTCCATAG
EY905315       <-- CAACACGGTATCCAGGACGCTCAAGAACAACGTAGAAGTCCATTCCATAG
FD571139       --> ..................................................
EX898285       --> ..................................................
EY906938       --> ..................................................
EY937745       --> ..................................................
EX753679       --> CAACACGGTATCCAGGACGCTCAAGAACAACGTAGAAGTCCATTCCATAG
EV570517       --> CAACACGGTATCCAGGACGCTCAAGAACAACGTAGAAGTCCATTCCATAG
EX750971       --> CAACACGGTATCCAGGACGCTCAAGAACAACATAGAAGTCCATTCCATAG
EV570516       --> CAACACGGTATCCAGGACGCTCAAGAACAACGTAAAAGTCCATTCCATAG
FD538796       --> CAACACGGTATCCAGGACGCTCAAGAACAACGTAAAAGTCCATTCCATAG

               1101   -   1151
UN18873        --> ATACCCGTAGAAGGATCGTACTTGATACCAAGATCAATGTGCTCCTGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- ..................................................
EV565200       <-- ATACCCGTAGAAGGATCGTACTTGATACCAAGATCAATGTGCTCCTGGAT
EV565199       <-- ..................................................
FD542823       <-- ATACCAGTAGAAGGATCGTACTTGATACCAAGATCAATGTGCTCCTGGAT
EX750143       <-- ATACCCGTAGAAGGATCGTACTTGATACCAAGATCAATGTGCTCCTGGAT
EY905315       <-- ATACCCGTAGAAGGATCGTACTTGATACCAAGATCAATGTGCTCCTGGAT
FD571139       --> ..................................................
EX898285       --> ..................................................
EY906938       --> ..................................................
EY937745       --> ..................................................
EX753679       --> ATACCCGTAGAAGGATCGTACTTGATACCAAGATCAATGTGCTCCTGGAT
EV570517       --> ATACCCGTAGAAGGATCGTACTTGATACCAAGATCAATGTGCTCCTGGAT
EX750971       --> ATACCAGTAGAAGGATCGTACTTGATACCAAGATCAATGTGCTCCTGGAT
EV570516       --> ATACCCGTAAAAGGATCGTACTTGATACCAAGATCAATGTGCTCCTGGAT
FD538796       --> ATACCAGTAGAAGGATCGTACTTGATACCAAGATCAATGTGCTCCTGGAT

               1151   -   1201
UN18873        --> ACCGAATCCAAAACAGCCAGTGTCACTGAAGTTCCTCCTCAACAGCTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- ..................................................
EV565200       <-- ACCGAATCCAAAACAGCCAGTGTCACTGAAGTTCCTCCTCAACAGCTCGT
EV565199       <-- ..................................................
FD542823       <-- ACCGAATCCAAAACAGCCAGTGTCACTGAAGTTCCACCTCAACAGCTCGT
EX750143       <-- ACCGAATCCAAAACAGCCGGTGTCACTGAAGTTCCTCCTCAACAGCTCGT
EY905315       <-- ACCGAATCCAAAACAGCCAGTGTCACTGAAGTTCCTCCTCAACAGCTCGT
FD571139       --> ..................................................
EX898285       --> ..................................................
EY906938       --> ..................................................
EY937745       --> ..................................................
EX753679       --> ACCGAATCCAAAACAGCCGGGGTCACTGAAGTTCCTCCTCAACAGCTCGT
EV570517       --> ACCGAATCCAAAACAGCCAGTGTCACTGAAGTTCCTCCTCAACAGCTCGT
EX750971       --> ACCGAATCCAAAACAGCCAGTGTCACTGAAGTTCCTCCTCAACAGCTCGT
EV570516       --> ACCGAATCCAAAACAGCCAGTGTCACTGAAGTTCCTCCTCAACAGCTCGT
FD538796       --> ACCGAATCCAAAACAGCCAGTGTCACTGAAGTTCCACCTCAACAGCTCGT

               1201   -   1251
UN18873        --> ACTCCTTCACTTTCAAACCACTCTCAAGAAGCTGCATTGCCTTGTCTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- ..................................................
EV565200       <-- ACTCCTTCACTTTCAAACCACTCTCAAGAAGCTGCATTGCCTTGTCTCCT
EV565199       <-- ..................................................
FD542823       <-- GCTCCTTAACTTTCGAACCACTCTCAAGAAGCTGCATTGCCTTGTCTCCT
EX750143       <-- ACTCCTTCACTTTCAAACCACTCTCAAGAAGCTGCATTGCCTTGTCTCCT
EY905315       <-- ACTCCTTAACTTTCAAACCACTCTCAAGAAGCTGCATTGCCTTGTCTCCT
FD571139       --> ..................................................
EX898285       --> ..................................................
EY906938       --> ..................................................
EY937745       --> ..................................................
EX753679       --> ACTCCTTCACTTTCAAACCACTCTCAAGAAGCTGCATTGCCTTGTCTCCT
EV570517       --> ACTCCTTCACTTTCAAACCACTCTCAAGAAGCTGCATTGCCTTGTCTCCT
EX750971       --> ACTCCTTCACTTTCAAACCACTCTCAAGAAGCTGCATTGCCCTGTCTCCT
EV570516       --> ACTCCTTCACTTTCAAACCACTCTCAAGAAGCTGCATTGCCTTGTCTCCT
FD538796       --> GCTCCTTAACTTTCGAACCACTCTCAAGAAGCTGCATTGCCTTGTCTCCT

               1251   -   1301
UN18873        --> CTCACGGTGACGTAGCACGCAATCTTTTCGTTACGCCTAATACCGAATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- ..................................................
EV565200       <-- CTCACGGTGACGTAGCACGCAATCTTTTCGTTACGCCTAATACCGAATGA
EV565199       <-- ..................................................
FD542823       <-- CTCACGGTGACGTAGCAAGCAATCTTTTCGTTACGCCTAATACCGAATGA
EX750143       <-- CTCACGGTGACGTAGCACGCAATCTTTTCGTTACGCCTAATACCGAATGA
EY905315       <-- CTCACGGTGACGTAGCACGCAATCTTTTCGTTACGCCTAATACCGAATGA
FD571139       --> ..................................................
EX898285       --> ..................................................
EY906938       --> ..................................................
EY937745       --> ..................................................
EX753679       --> CTCACGGTGACGTAGCACGCAATCTTTTCGTTACGCCTAATACCGAATGA
EV570517       --> CTCACGGTGACGTAGCACGCAATCTTTTCGTTACGCCTAATACCGAATGA
EX750971       --> CTCACGGTGACGTAGCACGCAATCTTTTCGTTACGCCTAATACCGAATGA
EV570516       --> CTCACGGTGACGTAGCACGCAATCTTTTCGTTACGCCTAATACCGAATGA
FD538796       --> CTCACGGTGACGTAGCAAGCAATCTTTTCGTTACGCCTAATACCGAATGA

               1301   -   1351
UN18873        --> CCTCACAGTGTACCTCGCCTTGGAGAAAACAGGAGTTTGACCACTGAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- ..................................................
EV565200       <-- CCTCACAGTGTACCTCGCCTTGGAGAAAACAGGAGTTTGACCACTGAGCT
EV565199       <-- ..................................................
FD542823       <-- CCTCACAGTGTACCTCGCCTTGGAGAAGACAGGAGTTTGACCACTGAGCT
EX750143       <-- CCTCACAGTGTACCTCGCCTTGGAGAAAACAGGAGTTTGACCACTGAGCT
EY905315       <-- CCTTACAGTGTACCTCGCCTTGGAGAAAACAGGAGTTTGACCACTGAGCT
FD571139       --> ..................................................
EX898285       --> ..................................................
EY906938       --> ..................................................
EY937745       --> ..................................................
EX753679       --> CCTCACAGTGTACCTCGCCTTGGAGAAAACAGGAGTTTGACCACTGAGCT
EV570517       --> CCTCACAGTGTACCTCGCCTTGGAGAAAACAGGAGTTTGACCACTGAGCT
EX750971       --> CCTCACAGTGTACCTTGCCTTGGAGAAGACAGGGGTTTGACCACTGAGCT
EV570516       --> CCTCACAGTGTACCTCGCCTTGGAGAAAACAGGAGTTTGACCACTGAGCT
FD538796       --> CCTCACAGTGTACCTCGCCTTGGAGAAGACAGGAGTTTGACCACTGAGCT

               1351   -   1401
UN18873        --> GTTCCAACACCTTGGAGGCACGGGTGAGACGATCACCACTCTCACCAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- ..................................................
EV565200       <-- GTTCCAACACCTTGGAGGCACGGGTGAGACGATCACCACTCTCACCAACA
EV565199       <-- ..................................................
FD542823       <-- GTTCCAACACCTTGGAGGCACGGGTGAGACGATCACCACTCTCACCAACA
EX750143       <-- GTTCCAACACCTTGGAGGCACGGGTGAGACGATCACCACTCTCACCAACA
EY905315       <-- GTTCCAACACCTTGGAGGCACGGGTGAGACGATCACCACTCTCACCAACA
FD571139       --> ..................................................
EX898285       --> ..................................................
EY906938       --> ..................................................
EY937745       --> ..................................................
EX753679       --> GTTCCAACACCTTGGAGGCACGGGTGAGACGATCACCACTCTCACCAACA
EV570517       --> GTTCCAACACCTTGGAGGCACGGGTGAGACGATCACCACTCTCACCAACA
EX750971       --> GTTCCAACACCTTGGAGGCACGGGTGAGACGATCACCACTCTCACCAACA
EV570516       --> GTTCCAACACCTTGGAGGCACGGGTGAGACGATCACCACTCTCACCAACA
FD538796       --> GTTCCAACACCTTGGAGGCACGGGTGAGACGATCACCACTCTCACCAACA

               1401   -   1451
UN18873        --> GAGATGTTAAGGACGAGCTTCTGAACCTTGATATCCCTCATTGGGTTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- ..................................................
EV565200       <-- GAGATGTTAAGGACGAACTTCTGAACCTTGATATCCCTCATTGGGTTCGA
EV565199       <-- ..................................................
FD542823       <-- GAGATGTTAAGGACGAGCTTCTGAACCTTGATATCCCTCATTGGGTTCGA
EX750143       <-- GAGATGTTAAGGACGAGCTTCTGAACCTTGATATCCCTCATTGGGTTCGA
EY905315       <-- GAGATGTTAAGGACGAGCTTCTGAACCTTGATATCCCTCATTGGGTTCGA
FD571139       --> ..................................................
EX898285       --> ..................................................
EY906938       --> ..................................................
EY937745       --> ..................................................
EX753679       --> GAGATGTTAAGGACGAGCTTCTGAACCTTGATATCCCTCATTGGGTTCGA
EV570517       --> GAGATGTTAAGGACGAACTTCTGAACCTTGATATCCCTCATTGGGTTCGA
EX750971       --> GAGATGTTAAGGACGAGCTTCTGAACCTTGATATCCCTCATTGGGTTCGA
EV570516       --> GAGATGTTAAGGACGAACTTCTGAACCTTGATATCCCTCATTGGGTTCGA
FD538796       --> GAGATGTTAAGGACGAGCTTCTGAACCTTGATATCCCTCATTGGGTTCGA

               1451   -   1501
UN18873        --> GAGCTTCTTCTCTGACGCCATCTCAGGATTCAGGGATGCGAGAAAAACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- ..................................................
EV565200       <-- GAGCTTCTTCTCTGACGCCATCTCAGGATTCAGGGATGCGAG........
EV565199       <-- ..................................................
FD542823       <-- GAGCTTCTTCTCTGACGCCATCTCAGGATTCAGGGATGCGAGAAAAA...
EX750143       <-- GAGCTTCTTCTCTGACGCCATCTCAGGATTCAGGGATGCGAGAAAAACGA
EY905315       <-- GAGCTTCTTCTCTGACGCCATCTCAGGATTCAGGGATGCGA.........
FD571139       --> ..................................................
EX898285       --> ..................................................
EY906938       --> ..................................................
EY937745       --> ..................................................
EX753679       --> GAGCTTCTTCTCTGACGCCATC............................
EV570517       --> GAGCTTCTTCTCTGACGCCATCTCAGGATTCAGGGATGCGAG........
EX750971       --> GAGCTTCTTCTCTGACGCCATC............................
EV570516       --> GAGCTTCTTCTCTGACGCCATCTCAGGATTCAGGGATGCGAG........
FD538796       --> GAGCTTCTTCTCTGACGCCATC............................

               1501   -   1551
UN18873        --> GGGAGCTGATCAGCAAAGAGAGTGGCAGAGTAATAACGGCCGGTTGCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902992       <-- ..................................................
EV565200       <-- ..................................................
EV565199       <-- ..................................................
FD542823       <-- ..................................................
EX750143       <-- GGGAGCTGATCAGCAAAGAGAGTGGCAGAGTAATAACGGCCGGTTGCGAG
EY905315       <-- ..................................................
FD571139       --> ..................................................
EX898285       --> ..................................................
EY906938       --> ..................................................
EY937745       --> ..................................................
EX753679       --> ..................................................
EV570517       --> ..................................................
EX750971       --> ..................................................
EV570516       --> ..................................................
FD538796       --> ..................................................

               1551   -   1601
UN18873        --> TCC
                   ~~~
EY902992       <-- ...
EV565200       <-- ...
EV565199       <-- ...
FD542823       <-- ...
EX750143       <-- TCC
EY905315       <-- ...
FD571139       --> ...
EX898285       --> ...
EY906938       --> ...
EY937745       --> ...
EX753679       --> ...
EV570517       --> ...
EX750971       --> ...
EV570516       --> ...
FD538796       --> ...