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Alignment for radish unigene UN18883

               1      -     51
UN18883        --> GGAGATTAGAAAAAACAACAACAAACAACTTCTCTCCTCCCGTCACAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> GGAGATTAGAAAAAACAACAACAAACAACTTCTCTCCTCCCGTCACAACA
EV552065       --> ..................................................
EY941670       --> ..................................................
EV568073       --> ..................................................

               51     -    101
UN18883        --> ATCCTCTAATCTCCGACGAAACCTCTCCGAATCAAAACCCTAATTCCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> ATCCTCTAATCTCCGACGAAACCTCTCCGAATCAAAACCCTAATTCCCCA
EV552065       --> ..................................................
EY941670       --> ..................................................
EV568073       --> ..................................................

               101    -    151
UN18883        --> AAACCCGATCCTTCCCCTCTCGATCTTCTTCTTAGTCGAATCTCACATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> AAACCCGATCCTTCCCCTCTCGATCTTCTTCTTAGTCGAATCTCACATCA
EV552065       --> ..................................................
EY941670       --> ..................................................
EV568073       --> ..................................................

               151    -    201
UN18883        --> GCAGCGAAGATGGTTTTAGCGGAGCTCGGCGGGCAGATCGCCAGCGCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> GCAGCGAAGATGGTTTTAGCGGAGCTCGGCGGGCAGATCGCCAGCGCCTT
EV552065       --> ..................................................
EY941670       --> ..................................................
EV568073       --> ..................................................

               201    -    251
UN18883        --> GCAGAAGATGAGCAACGTGACGATCATCGACGAGAAGGCTCTCAACGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> GCAGAAGATGAGCAACGTGACGATCATCGACGAGAAGGCTCTCAACGAGT
EV552065       --> ..................................................
EY941670       --> ..................................................
EV568073       --> ..................................................

               251    -    301
UN18883        --> GCTTGAAAGAGATCACTCGCGCTCTTCTCCATTCCGATGTCTCTTTCCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> GCTTGAAAGAGATCACTCGCGCTCTTCTCCATTCCGATGTCTCTTTCCCT
EV552065       --> ..................................................
EY941670       --> ..................................................
EV568073       --> ..................................................

               301    -    351
UN18883        --> CTCGTGAGGGAGATGCAGAACAATATCAAGAAGATCGTTAACCTCGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> CTCGTGAGGGAGATGCAGAACAATATCAAGAAGATCGTTAACCTCGAGGA
EV552065       --> ..................................................
EY941670       --> ..................................................
EV568073       --> ..................................................

               351    -    401
UN18883        --> GCTAGCCGCTGGCCACAACAAGCGACGGATCATTGAGCAGGCTATCTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> GCTAGCCGCTGGCCACAACAAGCGACGGATCATTGAGCAGGCTATCTTTA
EV552065       --> ..................................................
EY941670       --> ..................................................
EV568073       --> ..................................................

               401    -    451
UN18883        --> GTGAACTGTGTAAGATGTTAGATCCAGGAAAGCCTGCGTTTTCGCCCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> GTGAACTGTGTAAGATGTTAGATCCAGGAAAGCCTGCGTTTTCGCCCAAG
EV552065       --> ..................................................
EY941670       --> ..................................................
EV568073       --> ..................................................

               451    -    501
UN18883        --> AAGGCTAAACCTAGTGTTGTTATGTTCGTTGGATTACAAGGTGCTGGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> AAGGCTAAACCTAGTGTTGTTATGTTCGTTGGATTACAAGGTGCTGGTAA
EV552065       --> ..................................................
EY941670       --> ..................................................
EV568073       --> ..................................................

               501    -    551
UN18883        --> AACGACAACGTGTACCAAATATGCTTATTATCATCAGAAGAAAGGTTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> AACGACAACGTGTACCAAATATGCTTATTATCACCAGAAGAAAGGTTACA
EV552065       --> ............gACCAAATATGCTTATTATCATCAGAAGAAAGGTTACA
EY941670       --> ..................................................
EV568073       --> ..................................................

               551    -    601
UN18883        --> AACCTGCTCTGGTGTGTGCCGATACTTTCAGGGCTGGTGCTTTTGATCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> AACCTGCTCTGGTGTGTGCCGATACTT.......................
EV552065       --> AACCTGCTCTGGTGTGTGCCGATACTTTCAGGGCTGGTGCTTTTGATCAG
EY941670       --> ..................................................
EV568073       --> ..................................................

               601    -    651
UN18883        --> CTCAAACAGAATGCTACCAAGGCTAGGATTCCCTTTTATGGAAGCTACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> ..................................................
EV552065       --> CTCAAACAGAATGCTACCAAGGCTAGGATTCCCTTTTATGGAAGCTACAC
EY941670       --> ..................................................
EV568073       --> ..................................................

               651    -    701
UN18883        --> GGAATCCGATCCTGTGAAAATTGCTGTTGAGGGAGTTGATACGTTTAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> ..................................................
EV552065       --> GGAATCCGATCCTGTGAAAATTGCTGTTGAGGGAGTTGATACGTTTAAGA
EY941670       --> ..................................................
EV568073       --> ..................................................

               701    -    751
UN18883        --> AAGAAAACTGTGATCTTATTATTGTTGACACCAGTGGTCGACAAACAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> ..................................................
EV552065       --> AAGAAAACTGTGATCTTATTATTGTTGACACCAGTGGTCGACAAACAAGA
EY941670       --> ..................................................
EV568073       --> ..................................................

               751    -    801
UN18883        --> AGCTACTCTCTTTGAAGAAATGCGTCAAGTTGCTGAAGCAACGAAACCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> ..................................................
EV552065       --> AGCTACTCTCTTTGAAGAAATGCGTCAAGTTGCTGAAGCAACGAAACCAG
EY941670       --> ..................................................
EV568073       --> ..................................................

               801    -    851
UN18883        --> ATCTTGTTATATTTGTCATGGACAGCAGTATTGGTCAAGCTGCATTTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> ..................................................
EV552065       --> ATCTTGTTATATTTGTCATGGACAGCAGTATTGGTCAAGCTGCATTTGAC
EY941670       --> ..................................................
EV568073       --> ..................................................

               851    -    901
UN18883        --> CAAGCTCAAGCATTCAAGCAAAGTGTTGCCGTGGGAGCTGTGATCATCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> ..................................................
EV552065       --> CAAGCTCAAGCATTCAAGCAAAGTGTTGCCGTGGGAGCTGTGATCATCAC
EY941670       --> ..........................gGCCGTGGGAGCTGTGATCATCAC
EV568073       --> ..................................................

               901    -    951
UN18883        --> TAAGATGGACGGTCATGCCAAGGGTGGTGGTGCTCTTAGCGCTGTTGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> ..................................................
EV552065       --> TAAGATGGACGGTCATGCCAAGGGTGGTGGTGCTCTTAGCGCTGTTGCAG
EY941670       --> TAAGATGGACGGTCATGCCAAGGGTGGTGGTGCTCTTAGCGCTGTTGCAG
EV568073       --> ...GATGGACGGTCATGCCAAGGGTGGTGGTGCTCTTAGCGCTGTTGCAG

               951    -   1001
UN18883        --> CGACAAAGAGTCCTGTGATATTCATCGGAACAGGAGAGCATATGGATGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ..................................................
EV547054       <-- ..................................................
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> ..................................................
EV552065       --> CGACAAAGAGTCCTGTGATATTCATCGGAACAGGAGAGCATATGGATGAG
EY941670       --> CGACAAAGAGTCCTGTGATATTCATCGGAACAGGAGAGCATATGGATGAG
EV568073       --> CGACGAAGAGTCCTGTGATATTCATCGGAACAGGAGAGCATATGGATGAG

               1001   -   1051
UN18883        --> TTTGAAGTGTTTGACGTCAAACCGTTTGTCAGCCGTCTCTTAGGAATGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- .........................TTGTCAGCCGTCTCTTAGGAATGGG
EV547054       <-- ...............................GCCGTCTCTTAGGAATGGG
FD553936       <-- ..................................................
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> ..................................................
EV552065       --> TTTGAAGTGTTTGACGTCAAACCGTTTGTCAGCCGTCTCTTAGGAATGGG
EY941670       --> TTTGAAGTGTTTGACGTCAAACCGTTTGTCAGCCGTCTCTTAGGAATGGG
EV568073       --> TTTGAAGTGTTTGACGTCAAACCATTTGTCAGCCGTCTCTTAGGAATGGG

               1051   -   1101
UN18883        --> TGATTGGTCTGGATTCGTGGATAAACTACAAGATGTGGTACCTAAAGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- TGATTGGTCTGGATTCGTGGATAAACTACAAGATGTGGTACCTAAAGATC
EV547054       <-- TGATTGGTCTGGATTCGTGGATAAACTACAAGATGTGGTACCTAAAGATC
FD553936       <-- TGATTGGTCTGGATTCGTGGATAAACTACAAGATGTGGTACCTAAAGATC
EY937200       <-- ..................................................
FD544984       <-- ..................................................
FD548681       --> ..................................................
EV552065       --> TGATTGGTCTGGATTCGTGGATAAACTACAAGATGTGGTACCTAAAGATC
EY941670       --> TGATTGGTCTGGATTCATGGATAAACTACAAGATGTGGTACCTAAAGATC
EV568073       --> TGATTGGTCTGGATTCGTGGATAAACTACAAGATGTGGTACCTAAAGATC

               1101   -   1151
UN18883        --> AACAGCCTGAACTTCTGGAAAAGCTCTCTCAGGGTAACTTCACGTTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- AACAGCCTGAACTTCTGGAAAAGCTCTCTCAGGGCAACTTCACGTTGAGA  Raphanus raphanistrum subsp. landra
EV547054       <-- AACAGCCTGAACTTCTGGAAAAGCTCTCTCAGGGTAACTTCACGTTGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD553936       <-- AACAGCCTGAACTTCTGGAAAAGCTCTCTCAGGGCAACTTCACGTTGAGA  Raphanus raphanistrum subsp. landra
EY937200       <-- ..................AAAAGCTCTCTCAGGGTAACTTCACGTTGAGA  Raphanus sativus cv Early Scarlet Globe
FD544984       <-- ...................AAAGCTCTCTCAGGGTAACTTCACGTTGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548681       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV552065       --> AACAGCCTGAACTTCTGGAAAAGCTCTCTCAGGGTAACTTCACGTTGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY941670       --> AACAGCCTGAACTTCTGGAAAAGCTCTCTCAGGGTAACTTCACGTTGAGA  Raphanus sativus cv Early Scarlet Globe
EV568073       --> AACAGCCTGAACTTCTGGAAAAGCTCTCTCAGGGCAACTTCACGTTGAGA  Raphanus raphanistrum subsp. landra

               1151   -   1201
UN18883        --> ATTATGTACGACCAGTTCCAGAACTTACTGAACATGGGCCCACTTAGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ATTATGTACGACCAGTTCCAGAACTTACTGAACATGGGCCCACTTAGTGA
EV547054       <-- ATTATGTACGACCAGTTCCAGAACTTACTGAACATGGGCCCACTTAGTGA
FD553936       <-- ATTATGTACGACCAGTTCCAGAACTTACTGAACATGGGCCCACTTAGTGA
EY937200       <-- ATTATGTACGACCAGTTCCAGAACTTACTGAACATGGGCCCACTTAGTGA
FD544984       <-- ATTATGTACGACCAGTTCCAGAACTTACTGAACATGGGCCCACTTAGTGA
FD548681       --> ..................................................
EV552065       --> ATTATGTACGACCAGTTCCAGAACTTACTGAACATGGGCCCACTTAGTGA
EY941670       --> ATTATGTACGACCAGTTCCAGAACTTACTGAACATGGGCCCACTTAGTGA
EV568073       --> ATTATGTACGACCAGTTCCAGAACTTACTGAACATGGGCCCACTTAGTGA

               1201   -   1251
UN18883        --> GGTTTTCTCAATGCTGCCTGGAGCTGCTGCTCAAATGATGCCTAAAGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- GGTTTTCTCAATGCTGCCTGGAGCTGCTGCTCAAATGATGCCTAAAGGAC
EV547054       <-- GGTTTTCTCAATGCTGCCTGGAGCTGCTGCTCAAATGATGCCTAAAGGAC
FD553936       <-- GGTTTTCTCAATGCTGCCTGGAGCTGCTGCTCAAATGATGCCTAAAGGAC
EY937200       <-- GGTTTTCTCAATGCTGCCTGGAGCTGCTGCTCAAATGATGCCTAAAGGAC
FD544984       <-- GGTTTTCTCAATGCTGCCTGGAGCTGCTGCTCAAATGATGCCTAAAGGAC
FD548681       --> ..................................................
EV552065       --> GGTTTTCTCAATGCTGCCTGGAGCTGCTGCTCAAATGATGCCTAAAGGAC
EY941670       --> GGTTTTCTCAATGCTGCCTGGAGCTGCTGCTCAAATGATGCCTAAAGGAC
EV568073       --> GGTTTTCTCAATGCTGCCTGGAGCTGCTGCTCAAATGATGCCTAAAGGAC

               1251   -   1301
UN18883        --> ACGAGAAAGAAAGCCAAGCCAAGATAAAGCGATACATGACAATGATGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ACGAGAAAGAAAGCCAAGCCAAGATAAAGCGATACACGACAATGATGGAT
EV547054       <-- ACGAGAAAGAAAGCCAAGCCAAGATAAAGCGATACATGACAATGATGGAT
FD553936       <-- ACGAGAAAGAAAGCCAAGCCAAGATAAAGCGATACATGACAATGATGGGT
EY937200       <-- ACGAGAAAGAAAGCCAAGCCAAGATAAAGCGATACATGACAATGATGGAT
FD544984       <-- ACGAGAAAGAAAGCCAAGCCAAGATAAAGCGATACATGACAATGATGGAT
FD548681       --> ..................................................
EV552065       --> ACGAGAAAGAAAGCCAAGCCAAGATAAAGCGATACATGA...........
EY941670       --> ACGAGAAAGAAAGCCAAGCCAAGATAAAGCGATACATGACAATGATGGAT
EV568073       --> ACGAGAAAGAAAGCCAAGCCAAGATAAAGCGATACACGACAATGATGGAT

               1301   -   1351
UN18883        --> TCCATGACAAACGAAGAACTGGACAGCTCGAACCCGAAGATGTTTAACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- TCCATGACAAACGAAGAACTGGACAGTTCGAACCCGAAGATGTTTAACGA  Raphanus raphanistrum subsp. landra
EV547054       <-- TCCATGACAAACGAAGAATTGGACAGCTCGAACCCGAAGATGTTTAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD553936       <-- TCCATGACAAACGAAGAACTGGACAGTTCGAACCCGAAGATGTTTAACGA  Raphanus raphanistrum subsp. landra
EY937200       <-- TCCATGACAAACGAAGAATTGGACAGCTCGAACCCGAAGATGTTTAACGA  Raphanus sativus cv Early Scarlet Globe
FD544984       <-- TCCATGACAAACGAAGAACTGGACAGCTCGAATCCGAAGATGTTTAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548681       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV552065       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY941670       --> TCCATGACAAACGAAGAATTGGACAGCTCGAACCCGAAGATGTTTAACGA  Raphanus sativus cv Early Scarlet Globe
EV568073       --> TCCATGACAAACGAAGAACTGGACAGTTCGAACCCGAAGATGTTTAACGA  Raphanus raphanistrum subsp. landra

               1351   -   1401
UN18883        --> GTCAAGGATGATGAGGATAGCGAGAGGGTCTGGGAGGATGGTAAGAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- GTCAAGGATGATGAGGATAGCGAGAGGGTCAGGGAGGATGGTAAGAGAAG  Raphanus raphanistrum subsp. landra
EV547054       <-- GTCAAGGATGATGAGGATAGCGAGAGGGTCTGGGAGGATGGTAAGAGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD553936       <-- GTCAAGGATGATGAGGATAGCGAGAGGGTCAGGGAGGATGGTAAGAGAAG  Raphanus raphanistrum subsp. landra
EY937200       <-- GTCAAGGATGATGAGGATAGCGAGAGGGTCTGGGAGGATGGTAAGAGAAG  Raphanus sativus cv Early Scarlet Globe
FD544984       <-- ATCAAGGATGATGAGGATAGCGAGAGGGTCTGGGAGGATGGTAAGAGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548681       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV552065       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY941670       --> GTCAAGGATGATGAGGATAGCGAGAGGGTCTGGGAGGATGGTAAGAGAAG  Raphanus sativus cv Early Scarlet Globe
EV568073       --> GTCAAGGATGATGAGGATAGCGAGAGGGTCAGGGAGGATGGTAAGAGAAG  Raphanus raphanistrum subsp. landra

               1401   -   1451
UN18883        --> TGATGGAGATGTTGGAAGAGTACAAGAGGCTAGCAAAGATGTGGAGCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- TGATGGAGATGTTGGAAGAGTACAAGAGGCTAGCAAAGATGTGGAGCAAG
EV547054       <-- TGATGGAGATGTTGGAAGAGTACAAGAGGCTAGCAAAGATGTGGAGCAAG
FD553936       <-- TGATGGAGATGTTGGAAGAGTACAAGAGGCTAGCAAAGATGTGGAGCAAG
EY937200       <-- TGATGGAGATGTTGGAAGAGTACAAGAGGCTAGCAAAGATGTGGAGCAAG
FD544984       <-- TGATGGAGATGTTGGAAGAGTACAAGAGGCTAGCAAAGATGTGGAGCAAG
FD548681       --> ..................................................
EV552065       --> ..................................................
EY941670       --> TGATGGAGATGTTGGAAGAGTACAAGAGGCTAGCAAAGATGTGGAGCAAG
EV568073       --> TGATGGAGATGTTGGAAGAGTACAAGAGGCTAGCAAAGATGTGGAGCAAG

               1451   -   1501
UN18883        --> ATGAAAGGGCTCAAGATCCCAAAGAATGGAGACATGAGCGCACTCTCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ATGAAAGGGCTCAAGATCCCAAAGAATGGAGACATGAGCGCACTCTCGAG
EV547054       <-- ATGAAAGGGCTCAAGATCCCAAAGAATGGAGACATGAGCGCACTCTCGAG
FD553936       <-- ATGAAAGGGCTCAAGATCCCAAAGAATGGAGACATGAGCGCACTCTCGAG
EY937200       <-- ATGAAAGGACTCAAGATCCCAAAGAATGGAGACATGAGCGCACTCTCGAG
FD544984       <-- ATGAAAGGGCTCAAGATCCCAAAGAATGGAGACATGAGCGCACTCTCGAG
FD548681       --> ..................................................
EV552065       --> ..................................................
EY941670       --> ATGAAAGGACTCAAGATCCCAAAGAATGGAGACATGAGCGCACTCTCGAG
EV568073       --> ATGAAAGGGCTCAAGATCCCAAAGAATGGAGACATGAGCGCACTCTCGAG

               1501   -   1551
UN18883        --> AAACATGAACGCTCAGCACATGAGTAAGGTCCTTCCTCCTCAGATGCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- AAACATGAACGCTCAGCACATGAGTAAGGTCCTTCCTCCTCAGATGCTCA
EV547054       <-- AAACATGAACGCTCAGCACATGAGTAAGGTCCTTCCTCCTCAGATGCTCA
FD553936       <-- AAACATGAACGCTCAGCACATGAGTAAGGTCCTTCCTCCTCAGATGCTCA
EY937200       <-- AAACATGAACGCTCAGCACATGAGTAAGGTCCTTCCTCCTCAGATGCTCA
FD544984       <-- AAACATGAACGCTCAGCACATGAGTAAGGTCCTTCCTCCTCAGATGCTCA
FD548681       --> ..................................................
EV552065       --> ..................................................
EY941670       --> AAACATGAACGCTCAGCACATGAGTA-GGTCCTTCCTCCTCAGATGCTCA
EV568073       --> AAACATGAACGCTCAGCACATGAGTAAGGTCCTTCCTCCTCAGATGCTCA

               1551   -   1601
UN18883        --> AGCAGTTTGGAGGCATGGGCGGTCTGCAGAGTCTCATGAAACAGATGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- AGCAGTTTGGAGGCATGGGCGGTCTGCAGAGTCTCATGAAACGGATGGGT
EV547054       <-- AGCAGTTTGGAGGCATGGGCGGTTTGCAGAGTCTCATGAAGCAGATGGGT
FD553936       <-- AGCAGTTTGGAGGCATGGGCGGTCTGCAGAGTCTCATGAAACAGATGGGT
EY937200       <-- AGCAGTTTGGAGGCATGGGCGGTTTGCAGAGTCTCATGAAACAGATGGGT
FD544984       <-- AGCAGTTTGGAGGCATGGGCGGTCTGCAGAGTCTCATGAAACAGATGGGT
FD548681       --> ..................................................
EV552065       --> ..................................................
EY941670       --> AGCAGTTTGGAGGCATGG................................
EV568073       --> AGCAGTTTGGAGGCATGGGCGGTCTGCAGAGTCTCATGAAACGGATGGGT

               1601   -   1651
UN18883        --> TCTGGCAAAGACATGATGGGTATGTTTGGTGGCGGCAAAGACAAATAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- TCTGGCAAAGACATGATGGGTATGTTTGGTGGCGGCAAAGACAAATAGTT
EV547054       <-- TCTGGCAAAGACATGATGGGTATGTTTGGTGGCGGCAAAGACAAATAGTT
FD553936       <-- TCTGGCAAAGACATGATGGGTATGTTTGGTGGCGGCAAAGACAAATAGTT
EY937200       <-- TCTGGCAAAGACATGATGGGTATGTTTGGTGGCGGCAAAGACAAATAGTT
FD544984       <-- TCTGGCAAAGACATGATGGGTATGTTTGGTGGCGGCAAAGACAAATAGTT
FD548681       --> ..................................................
EV552065       --> ..................................................
EY941670       --> ..................................................
EV568073       --> TCTGGCAAAGACATGATGGGTATGTTTGGTGGCGGCAAAGACAAATAGTT

               1651   -   1701
UN18883        --> TCTTTCTTCCTTTCTTACACCCAAAATCTACACCTTCCTCATTTGTCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- TCTTTCTTCCTTTCTTACACCCAAAATCTACACCTTCCTCATTTGTCGTT
EV547054       <-- TCTTTCTTCCTTTCTTACACCCAAAATCTACACCTTCGCCATTTGTCGTT
FD553936       <-- TCTTTCTTCCTTTCTTACACCCAAAATCTACCCCTTCCTCATTTGTCGTT
EY937200       <-- TTTTTTTTCCTTTCTTACACCCAAAATCTACACCTTCCTCATTTGTCGTT
FD544984       <-- TCTTTCTTCCTTTCTTACACCCAAAATCTACACCTTCCTCATTTGTCGTT
FD548681       --> ..................................................
EV552065       --> ..................................................
EY941670       --> ..................................................
EV568073       --> TCTTTCTTCCTTTCTTACACCCAAAATCTACACCTTCCTCATTTGTCGTT

               1701   -   1751
UN18883        --> TACTAGTTTTTTTTT--CCTGTGAAAATATCAACGATTTCCCTTTTTT-A
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- TACTAGTTTTTTTTT-TCCTGTGAAAGTATCAACGATTTCCCTTTTTT-A
EV547054       <-- TACTAGTTTTTTTTTTTCCTGTGAAAATATCAACGATTTCCCTTTTTT-A
FD553936       <-- TACTAGTTTTTTTTT--CCTGTGAAAATATCAACGATTTCCCTTTTTT-A
EY937200       <-- TACTAGTTTTTTTTTTTCCTGTGAAAATATCAGCGATTTCCCTTTTTT-A
FD544984       <-- TACTAGTTTTTTTTT--CCTGTGAAAATATCAACGTTTTCCCTTTTTTTA
FD548681       --> ..................................................
EV552065       --> ..................................................
EY941670       --> ..................................................
EV568073       --> TACTA.............................................

               1751   -   1801
UN18883        --> ATTTTCCTGTATTTCCATTCGCCTTTCAGTTTATCTTTCTTTGTATTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- ATTTTCCTGTATTTCCATTCGCCTTTCAGTTTATCTTTCTTTGTATTTTT
EV547054       <-- ATTTTCCTGTATTTCCATTCGCCTTTCAGTTTATCTTTCTTTGTATTTTT
FD553936       <-- ATTTTCCTGTATTTCCATTCGCCTTTCAGTTTATCTTTCTTTGTATTTTT
EY937200       <-- ATTTTCCTGTATTTCCATTCGCCTTTCAGTTTATCTTTCTTTGTATTTTT
FD544984       <-- ATTTTCCTGTATTTCCATTCGCCTTTCAGTTTATCTTTCTTTGTATTTTT
FD548681       --> ..................................................
EV552065       --> ..................................................
EY941670       --> ..................................................
EV568073       --> ..................................................

               1801   -   1851
UN18883        --> CCTTTCTCGAAGTAAAAGATTTTCAACTATGTTTTTTTC....
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572878       <-- CCTTTCTCG..................................
EV547054       <-- CCTTTCTCGAAGTAAAAGATTTTCAACTATGTTTTTTTCaaag
FD553936       <-- CCTTTCTCGAAATAAAAGATTTTCAACT...............
EY937200       <-- CCTTTCTCGAAGTAAAAGATTTTCAACTATGTTTTTTTCg...
FD544984       <-- CCTTTCTCGAAGTAAAAGATTTTC...................
FD548681       --> ...........................................
EV552065       --> ...........................................
EY941670       --> ...........................................
EV568073       --> ...........................................