1      -     51
UN18891        --> TTTTTTCTTGTGTGGCCTTTATTTGCAAGAAATGTCTTCGTGTGCCATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976517       <-- ....................ATTTGCAAGAAATGTCTTCGTGTGCCATCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730111       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW729425       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD545794       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980659       --> TTTTTTCTTGTGTGGCCTTTATTTGCAAGAAATGTCTTCGTGTGCCATCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725680       --> ....ggaTTGCGTGGCTGTTATTTGCAAGAAATGGCTTCGTGTGCCATCA  Raphanus sativus cv Early Scarlet Globe
EW726810       --> ....ggaTTGCGTGGCTGTTATTTGCAAGAAATGGCTTCGTGTGCCATCA  Raphanus sativus cv Early Scarlet Globe
FD549761       --> .........ggGTGGCCGTTATTTGCAAGAAATGTCTTCGTGTGCCATCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD571788       --> ..................ggATTTGCAAGAAATGGCTTCGTGTGCCATCG  Raphanus sativus cv Early Scarlet Globe

               51     -    101
UN18891        --> TCTCAAACCCAGTTCATACCGTCAAGATCTTGAAGAGAAGAAGTCCGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976517       <-- TCTCAAACCCAGTTCATACCGTCAAGATATTGAAGAGAAGAAGTCCGTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730111       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW729425       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD545794       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980659       --> TCTCAAACCCAGTTCATACCGTCAAGATATTGAAGAGAAGAAGTCCGTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725680       --> TCTCAAACCCAGTTCATACCGTCAAGATCTTGGAGAGAAGAAGTCCGTAC  Raphanus sativus cv Early Scarlet Globe
EW726810       --> TCTCAAACCCAGTTCATACCGTCAAGATCTTGGAGAGAAGAAGTCCGTAC  Raphanus sativus cv Early Scarlet Globe
FD549761       --> TCTCAAACCCAGTTCATACCGCCAAGATTTTGAAGAGAAGAAGTCCGTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD571788       --> TCTCAAACCCAGCAAATACCGTCAAGATCTTGAAGAGAAGAAGTCCGTAC  Raphanus sativus cv Early Scarlet Globe

               101    -    151
UN18891        --> TGTGGTCTGTTTGGTTGGAACTCCGGCGAGAAACTAGACAATCTCCGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976517       <-- TGTGGTCTGTTTGGTTGGAACTCCGGCGAGAAACTAGACAATCCCCGACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730111       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW729425       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD545794       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980659       --> TGTGGTCTGTTTGGTTGGAACTCCGGCGAGAAACTAGACAATCCCCGACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725680       --> AGTGGTCTGTTTGGTTGGAACTCCGACGAGAAACTAGACAATCTCCGACC  Raphanus sativus cv Early Scarlet Globe
EW726810       --> AGTGGTCTGTTTGGTTGGAACTCCGACGAGAAACTAGACAATCTCCGACC  Raphanus sativus cv Early Scarlet Globe
FD549761       --> TGTGGTCTGTTTGGTTGGAACTCCGGCGAGAAACTAGACAATCTCCGACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD571788       --> AGTGGTCTGTTTGGTTGGAACTCCGGCGAGAAGCTAGACAATCTCCGACT  Raphanus sativus cv Early Scarlet Globe

               151    -    201
UN18891        --> GCCACAGAAAGTGGTCTACCATGACGACGTCGAACTTCCTTTCTCTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976517       <-- GCCACAGAAAGTGGTCTACCATGACGACGTCGAACTTCCTTTCTCTCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730111       <-- ...........................................TCTCTTT  Raphanus sativus cv Early Scarlet Globe
EW729425       <-- ...............................................TTT  Raphanus sativus cv Early Scarlet Globe
FD545794       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980659       --> GCCACAGAAAGTGGTCTACCATGACGACGTCGAACTTCCTTTCTCTCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725680       --> GCCACAGAAAGTGGTCTACCATGACGACGTCCAACTTCCTTTCTCTCTTT  Raphanus sativus cv Early Scarlet Globe
EW726810       --> GCCACAGAAAGTGGTCTACCATGACGACGTCCAACTTCCTTTCTCTCTTT  Raphanus sativus cv Early Scarlet Globe
FD549761       --> GCCACAGAAAGTGGTCTACCATGACGACGTCGAACTTCCTTTCTCTCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD571788       --> GCCACAGAAAGTGGTCTACCATGACGAAGTCCAACTTCCTTTCTCTCTTT  Raphanus sativus cv Early Scarlet Globe

               201    -    251
UN18891        --> CGTTGGTAAACAAGACCTTCCTAAAGGGAAGAGAACTAAAATGTTGCTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976517       <-- CGTTGGTAAACAAGACCTTCCTAAAGGGAAGAGAACTAAAATGTTGCTAC
EW730111       <-- CGTTGGTAAACAAGACCTTCCTAAAGGGAAGAGAACTAAAATGTTGCTAC
EW729425       <-- CGTTGGTAAACAAGACCTTCCTAAAGGGAAGAGAACTAAAATGTTGCTAC
FD545794       <-- ..................................................
FD980659       --> CGTTGGTAAACAAGACCTTCCTAAAGGGAAGAGAACTAAAATGTTGCTAC
EW725680       --> CGTTGGTAAACAAGACCTTCCTAAAGGGAAGAGAACTAAAATGTTGCTAC
EW726810       --> CGTTGGTAAACAAGACCTTCCTAAAGGGAAGAGAACTAAAATGTTGCTAC
FD549761       --> CGTTGGTAAACAAGACCTTCCTAAAGGGAAGAGAACTAAAATGTTGCTAC
FD571788       --> CGTTGGTAAACAAGACCTTCCTAAAGGGAAGAGAACTAAAATGTTGCTAC

               251    -    301
UN18891        --> AAAGCAAGCATCGATGGGTTTAGTGCAACAAAGTTCCACGAACGTTGCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976517       <-- AAAGCAAGCATCGATGGGTTTAGTGCAACAAAGTTCCACGAACGTTGCGA
EW730111       <-- AAAGCAAGCATCGATGGGTTTAGTGCAACAAAGTTCCACGAACGTTGCGA
EW729425       <-- AAAGCAAGCATCGATGGGTTTAGTGCAACAAAGTTCCACGAACGTTGCGA
FD545794       <-- ..................................................
FD980659       --> AAAGCAAGCATCGATGGGTTTAGTGCAACAAAGTTCCACGAACGTTGCGA
EW725680       --> AAAGCAAGCATCGATGGGTTTAGTGCAACAAAGTTCCACGAACGTTGCGA
EW726810       --> AAAGCAAGCATCGATGGGTTTAGTGCAACAAAGTTCCACGAACGTTGCGA
FD549761       --> AAAGCAAGCATCGATGGGTTTAGTGCAACAAAGTTCCACGAACGTCGCGA
FD571788       --> AAAGCAAGCATCGATGGGTTTAGTGCAACAAAGTTCCACGAACGTTGCGA

               301    -    351
UN18891        --> TTTCCAAGGTCCATGTGTTATTATAGCTTACACCAGAGACATGTCTTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976517       <-- TTTCCAAGGTCCATGTGTTATTATAGCTTACACCAGAGACATGTCTTTCA
EW730111       <-- TTTCCAAGGTCCATGTGTTATTATTGCTTACACCAGAGACATGTCTTTCA
EW729425       <-- TTTCCAAGGTCCATGTGTTATTATTGCTTACACCAGAGACATGTCTTTCA
FD545794       <-- .........TCCATGTGTTATTATAGCTTACACCAGAGACATGTCTTTCA
FD980659       --> TTTCCAAGGTCCATGTGTTATTATAGCTTACACCAGAGACATGTCTTTCA
EW725680       --> TTTCCAAGGTCCATGTGTTATTATTGCTTACACCAGAGACATGTCTTTCA
EW726810       --> TTTCCAAGGTCCATGTGTTATTATTGCTTACACCAGAGACATGTCTTTCA
FD549761       --> TTTCCAAGGTCCATGTGTTATTATAGCTTACACCAGAGACATGTCTTTCA
FD571788       --> TTTCCAAGGTCCATGTGTTATTATAGCTTACACCAGAGACATGTCTTTCA

               351    -    401
UN18891        --> AGTTTGGCGGATTTAGCCCTGAAGGCTATCGAAGCACTGATGATTATTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976517       <-- AGTTTGGCGGATTTAGCCCTGAAGGCTATCGAAGCACTGATGATTATTAC
EW730111       <-- AGTTTGGCGGATTTAGCCCTGAAGGCTATCGAAGCACTGATGATTATTAC
EW729425       <-- AGTTTGGCGGATTTAGCCCTGAAGGCTATCGAAGCACTGATGATTATTAC
FD545794       <-- AGTTTGGCGGATTTAGCCCTGAAGGCTATCGAAGCACTGATGATTATTAC
FD980659       --> AGTTTGGCGGATTTAGCCCTGAAGGCTATCGAAGCACTGATGATTATTAC
EW725680       --> AGTTTGGCGGATTTAGCCCTGAAGGCTATCGAAGCACTGATGATTATTAC
EW726810       --> AGTTTGGCGGATTTAGCCCTGAAGGCTATCGAAGCACTGATGATTATTAC
FD549761       --> AGTTTGGCGGATTTAGCCCTGAAGGCTATCGAAGCACTGATGATTATTAC
FD571788       --> AGTTTGGCGGATTTAGCCCTGAAGGCTATCGAAGCACTGATGATTATTAC

               401    -    451
UN18891        --> GATACATTTGACGCTTTCCTCTTCTACTGGCTCGACGAGAGCGATGAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976517       <-- GATACATTTGACGCTTTCCTCTTCTACTGGCTCGACGAGAGCGATGAACC
EW730111       <-- GATACATTTGACGCTTTCCTCTTCTACTGGCTCGACGAGAGCGATGAGCC
EW729425       <-- GATACATTTGACGCTTTCCTCTTTTACTGGCTCGACGAGAGCGATGAGCC
FD545794       <-- GATACATTTGACGCTTTCCTCTTCTTCTGGCTCGACGAGAGCGATGAGCC
FD980659       --> GATACATTTGACGCTTTCCTCTTCTACTGGCTCGACGAGAGCGATGAACC
EW725680       --> GATACATTTGACGCTTTCCTCTTCTACTGGCTCGACGAGAGCGATGAGCC
EW726810       --> GATACATTTGACGCTTTCCTCTTCTACTGGCTCGACGAGAGCGATGAGCC
FD549761       --> GATACATTTGACGCTTTCCTCTTCTTCTGGCTCGACGAGAGCGATGAGCC
FD571788       --> GATACATTTGACGCTTTCCTCTTCTACTGGCTCGACGAGAGCGATGAGCC

               451    -    501
UN18891        --> AATCGTACTTCCTAAGGTTGGAGGAGGTGGAGCGGCTCTGTTTGATTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976517       <-- AATCATACTTCCTAAGGTTGGAGGAGGTGGAGCGGCTCTGTTTGATTATG
EW730111       <-- AATCGTACTTCCTAAGGTTGGAGGAGGTGGAGCGGCTCTGTTTGATTATG
EW729425       <-- AATCGTACTTCCTAAGGTTGGAGGAGGTGGAGCGGCTCTGTTTGATTATG
FD545794       <-- AATCGTACTTCCTAAGGTTGGAGGAGGTGGAGCGGCTCTGTTTGATTATG
FD980659       --> AATCATACTTCCTAAGGTTGGAGGAGGTGGAGCGGCTCTGTTTGATTATG
EW725680       --> AATCGTACTTCCTAAGGTTGGAGGAGGTGGAGCGGCTCTGTTTGATTATG
EW726810       --> AATCGTACTTCCTAAGGTTGGAGGAGGTGGAGCGGCTCTGTTTGATTATG
FD549761       --> AATCGTACTTCCTAAGGTTGGAGGAGGTGGAGCGGCTCTGTTTGATTATG
FD571788       --> AATCGTACTTCCTAAAGTTGGAGGAAGTGGAGCGGCTCTGTTTGATTATG

               501    -    551
UN18891        --> CACGCGGAGGGCCTCAGTTTGGAGCTGACGGGCTTCTTATTGGACCTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976517       <-- CACGCGGAGGGCCTCAGTTTGGAGCTGACGGGCTTCTTATTGGACCTCCT
EW730111       <-- CACGCGGAGGGCCTCAGTTTGGAGCTGACGGGCTTCTTATTGGACCTCCT
EW729425       <-- CACGCGGAGGGCCTCAGTTTGGAGCTGACGGGCTTCTTATTGGACCTCCT
FD545794       <-- CACACGGAGGGCCTCAGTTTGGAGCTGACGGGCTTCTTATTGGACCTCCT
FD980659       --> CACGCGGAGGGCCTCAGTTTGGAGCTGACGGGCTTCTTATTGGACCTCCT
EW725680       --> CACGCGGAGGGCCTCAGTTTGGAGCTGACGGGCTTCTTATTGGACCTCCT
EW726810       --> CACGCGGAGGGCCTCAGTTTGGAGCTGACGGGCTTCTTATTGGACCTCCT
FD549761       --> CACACGGAGGGCCTCAGTTTGGAGCTGACGGGCTTCTTATTGGACCTCCT
FD571788       --> CACGGGGAGGGCCTCAGTTTGGACCTGACGGGCTTCTTATTGGACCTCCT

               551    -    601
UN18891        --> TTAGCTCCCGTGATGGGCGGGTTTGCGGGTCCAGATACGAACTCAGGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976517       <-- TTAGCTCCCGTGATGGGCGGGTTTGCGGTTCCAGATACGAACTCAGGGAT
EW730111       <-- TTAGCTCCCGTGATGGGCGGGTTTGCGGGTCCAGATACGAACTCAGGGAT
EW729425       <-- TTAGCTCCCGTGATGGGCGGGTTTGCGGGTCCAGATACGAACTCAGGGAT
FD545794       <-- TTAGCTCCTGTGATGGGTGGGTTTGCGGGTCCGGATACGAACTCAGGGAT
FD980659       --> TTAGCTCCCGTGATGGGCGGGTTTGCGGTTCCAGATACGAACTCAGGGAT
EW725680       --> TTAGCTCCCGTGATGGGCGGGTTTGCGGGTCCAGATACGAAC........
EW726810       --> TTAGCTCCCGTGATGGGCGGGTTTGCGGGTCCAGATACGAACTCAGGGAT
FD549761       --> TTAGCTCCTGTGATGGGTGGGTTTGCGGGTCC-GATACGAACTCAGGGAT
FD571788       --> TTAGCTCCTGTGATGGGCGGGTTTGCGGGTCCGGATACGAACTCAGGGAT

               601    -    651
UN18891        --> TGGTGATTTGAGGATGGCTAAATCAAGACTGGGTTTGTCATATGCTAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976517       <-- TGGTGATTTGAGGATGGCTAAATCAAGACTGGGTTTGTCATATGCTAAGA
EW730111       <-- TGGTGATTTGAGGATGGCTAAATCAAGACTGGGTTTGTCATATGCTAAGA
EW729425       <-- TGGTGATTTGAGGATGGCTAAATCAAGACTGGGTTTGTCATATGCTAAGA
FD545794       <-- TGGCGATTTGAGGATGGCTAAATCAAGACTGGGTTTGTCATATGCTAAGA
FD980659       --> TGGTGATTTGAGGATGGCTAAATCAAGACTGGGTTTGTCATATGCTA...
EW725680       --> ..................................................
EW726810       --> TGGTGATTTGAGGATGGCTAAATCAAGACTGGGTTTGTCATATGCTAAGA
FD549761       --> TGGCGATTT.........................................
FD571788       --> TGGTGATTTGAGGATGGCTAAATCAAGACTGGGTTTGTCATATGCTAAGA

               651    -    701
UN18891        --> GGAAAGATGGGAAGGAATCTATCTTTGGAGATGAAAGTAAGGTTACTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976517       <-- GGAAAGATGGGAAGGAATCTATCTTTGGAGATGAAAGTAAGGTTACTCTT
EW730111       <-- GGAAAGATGGGAAGGAATCTATCTTTGGAGATGAAAGTAAGGTTACTCTA
EW729425       <-- GGAAAGATGGGAAGGAATCTATCTTTGGAGATGAAAGTAAGGTTACTCTA
FD545794       <-- GGAAAGATGGGAAGGAATCTATCTTTGGAGATGAAAGTAAGGTTACTCTA
FD980659       --> ..................................................
EW725680       --> ..................................................
EW726810       --> GGAAAGATGGGAAG-AATCTATCTTTGGAGATGAAAGTAAG-TTACTCTA
FD549761       --> ..................................................
FD571788       --> GGAAAGATGGAAAGGAATCTATCTTTGGAGATGAAAGTAAG-TTACTCTT

               701    -    751
UN18891        --> GACGATGTCTTGGTCTTTTGTAGCCCTTATATTGCTTCTTTGTATTAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976517       <-- GACGATGTCTTGGTCTTTTGTAGCCCTTATATTGCTTCTTTGTATTAAGA
EW730111       <-- GACGATGTCTTGGTCTTTTGTAGCCCTTATATTGCTTCTTTGTATTAAGA
EW729425       <-- GACGATGTCTTGGTCTTTTGTAGCCCTTATATTGCTTCTTTGTATTAAGA
FD545794       <-- GACGATGTCTTGGTCTTTTGTAGCCCTTATATTGCTTCTTTGTATTAAGA
FD980659       --> ..................................................
EW725680       --> ..................................................
EW726810       --> GACGATGTCTTGGTCTTTTGTAGCCCTTATATTGCTTCTTTGTATTAgat
FD549761       --> ..................................................
FD571788       --> GACGATGTCTTGGTCTTTTGTAGCCCTTATATTGCTTCTTTGTAT-AAGA

               751    -    801
UN18891        --> TTACAAAACCAATCTCACTATATTCCAATAAAAGTTCACAATAATTTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976517       <-- TTACAAAACCAATCTCACTATATTCC........................
EW730111       <-- TTACAAAACCAATCTCACTATATTCCAATAAAAGTTCACAATAATTTATT
EW729425       <-- TTACAAAACCAATCTCACTATATTCCAATAAAAGTT..............
FD545794       <-- TTACAAAACCAATCTCACTATAT...........................
FD980659       --> ..................................................
EW725680       --> ..................................................
EW726810       --> acaaaccat.........................................
FD549761       --> ..................................................
FD571788       --> TTACAAA...........................................

               801    -    851
UN18891        --> TTTT
                   ~~~~
FD976517       <-- ....
EW730111       <-- TTTT
EW729425       <-- ....
FD545794       <-- ....
FD980659       --> ....
EW725680       --> ....
EW726810       --> ....
FD549761       --> ....
FD571788       --> ....