RadishBase

| | | |
Alignment for radish unigene UN18962

               1      -     51
UN18962        --> GGGATCGGCTTTTAATCATTTTGCTAGGGTTCCAATCAGATATCTGCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- ..................................................
EY894808       <-- ..................................................
EY896276       <-- ..................................................
FD546502       <-- ..................................................
EV547370       <-- ..................................................
FD960604       <-- ..................................................
EX753708       <-- ..................................................
EV552453       --> GGGATCGGCTTTTAATCATTT-GCTAGGGTTCCAATCAGATATCTGCAAC
EX750176       --> GGGATCGGCTTTTAATCATTTTGCTAGGGTTCCAATCAGATATCTGCAAC
FD970808       --> GGGATCGGCTTTTAATCATTT-GCTAGGGTTCCAATCAGATATCTGCAAC
EY898874       --> .GGATCGGCTTTTAATCATTTTGCTAGGGTTCCAATCAGATATCTGCAAC
FD965315       --> ...........ggAATCATTTTGCTAGGGTTCCAATCAGATATCTGCAAC
FD532953       --> .................tTTTTGCTAGGGTTCCAATCAGATATCTGCAAC
FD964666       --> .................tTTTTGCTAGGGTTCCAATCAGATATCTGCAAC
EY900821       --> ....................ggGCTAGGGTTCCAATCAGATATCTGCAAC
EY900930       --> .......................................ggATCTGCAAC
EX757507       --> ..............................................gggC
EX758014       --> ..............................................gggC

               51     -    101
UN18962        --> AAGAACAA-AAAAATGGCTATGGCTGGTCGTATCAGATCCGGGATCTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY894808       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY896276       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD546502       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547370       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD960604       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX753708       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV552453       --> AACGACAACAAAAATGGCTTTGGCTGGTCGTATCAGATCCGGGATCTCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750176       --> AAGAACAA-AAAAATGGCTATGGCTGGTCGTATCAGATCCGGGATCTCCT  Raphanus raphanistrum subsp. maritimus
FD970808       --> AA---CAA-AAAAATGGCTTTGGCTGGTCGTATCAGATCCGGGATCTCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898874       --> AAGAACAA-AAAAATGGCTATGGCTGGTCGTATCAGATCCGGGATCTCCT  Raphanus raphanistrum subsp. maritimus
FD965315       --> AAGAACAA-AAAAATGGCTATGGCTGGTCGTATCAGATCCGGGATCTCCT  Raphanus raphanistrum subsp. maritimus
FD532953       --> AAGAACAA-AAAAATGGCTATGGCTGGTCGTATCAGATCCGGGATCTCCT  Raphanus raphanistrum subsp. maritimus
FD964666       --> AAGAACAA-AAAAATGGCTATGGCTGGTCGTATCAGATCCGGGATCTCCT  Raphanus raphanistrum subsp. maritimus
EY900821       --> AAGAACAA-AAAAATGGCTATGGCTGGTCGTATCAGATCCGGGATCTCCT  Raphanus raphanistrum subsp. maritimus
EY900930       --> AAGAACAA-AAAAATGGCTATGGCTGGTCGTATCAGATCCGGGATCTCCT  Raphanus raphanistrum subsp. maritimus
EX757507       --> AACAACAA-AAAAATGGCTTTGGCTGGTCGTATCAGATCCGGGATCTCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758014       --> AACAACAA-AAAAATGGCTTTGGCTGGTCGTATCAGATCCGGGATCTCCT  Raphanus raphanistrum subsp. raphanistrum (MS)

               101    -    151
UN18962        --> TCTTCAAGACCATCGCCGTCTCAGATTCCGTCTCCTCTGTGAGATCTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- ..................................................
EY894808       <-- ..................................................
EY896276       <-- ..................................................
FD546502       <-- ..................................................
EV547370       <-- ..................................................
FD960604       <-- ..................................................
EX753708       <-- ..................................................
EV552453       --> TCTTCAAGACCATCGCCGTCTCAGATTCCGTCTCTTCTGTGAGATCTTAT
EX750176       --> TCTTCAAGACCATCGCCGTCTCAGATTCCGTCTCCTCTGTGAGATCTTAT
FD970808       --> TCTTCAAGACCGTCGCCGTCTCAGATTCCGTCTCCTCTGCGAGATCTTAT
EY898874       --> TCTTCAAGACCATCGCCGTCTCAGATTCCGTCTCCTCTGTGAGATCTTAT
FD965315       --> TCTTCAAGACCATCGCCGTCTCAGATTCCGTCTCCTCTGTGAGATCTTAT
FD532953       --> TCTTCAAGACCATCGCCGTCTCAGATTCCGTCTCCTCTGTGAGATCTTAT
FD964666       --> TCTTCAAGACCATCGCCGTCTCAGATTCCGTCTCCTCTGTGAGATCTTAT
EY900821       --> TCTTCAAGACCATCGCCGTCTCAGATTCCGTCTCCTCTGTGAGATCTTAT
EY900930       --> TCTTCAAGACCATCGCCGTCTCAGATTCCGTCTCCTCTGTGAGATCTTAT
EX757507       --> TCTTCAAGACCGTCGCCGTCTCAGATTCCGTCTCCTCTGCGAGATCTTAT
EX758014       --> TCTTCAAGACCGTCGCCGTCTCAGATTCCGTCTCCTCTGCGAGATCTTAT

               151    -    201
UN18962        --> CCCAGTGGACGTCCTCTTATCCCTGCGTTGAGAGATTATGCAACAGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- ..................................................
EY894808       <-- ..................................................
EY896276       <-- ..................................................
FD546502       <-- ..................................................
EV547370       <-- ..................................................
FD960604       <-- ..................................................
EX753708       <-- ..................................................
EV552453       --> CCCAGTGGACGGCCTCTTATCCCTGCGTTGAGAGATTATGCAACAGCTTC
EX750176       --> CCCAGTGGACGTCCTCTTATCCCTGCGTTGAGAGATTATGCAACAGCTTC
FD970808       --> CCCAGTGGACGTCCTCTTATCCCTGCGTTGAGAGACTATGCAACAGCTTC
EY898874       --> CCCAGTGGACGTCCTCTTATCCCTGCGTTGAGAGATTATGCAACAGCTTC
FD965315       --> CCCAGTGGACGTCCTCTTATCCCTGCGTTGAGAGATTATGCAACAGCTTC
FD532953       --> CCCAGTGGACGTCCTCTTATCCCTGCGTTGAGAGATTATGCAACAGCTTC
FD964666       --> CCCAGTGGACGTCCTCTTATCCCTGCGTTGAGAGATTATGCAACAGCTTC
EY900821       --> CCCAGTGGACGTCCTCTTATCCCTGCGTTGAGAGATTATGCAACAGCTTC
EY900930       --> CCCAGTGGACGTCCTCTTATCCCTGCGTTGAGAGATTATGCAACAGCTTC
EX757507       --> CCCAGTGGACGTCATCTTATCCCTGCGTTGAGAGACTATGCAACAGCTTC
EX758014       --> CCCAGTGGACGTCCTCTTATCCCTGCGTTGAGAGACTATGCAACAGCTTC

               201    -    251
UN18962        --> AGCTCAGAAAACTGGCAATGTTAAGGTGCCAGTGGCTTTAGTTGGTGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- ........................GGTGCCAGTGGCTTTAGTTAGTGAAT
EY894808       <-- ............................CCAGTGGCTTTAGTTGGTGAAT
EY896276       <-- ..................................................
FD546502       <-- ..................................................
EV547370       <-- ..................................................
FD960604       <-- ..................................................
EX753708       <-- ..................................................
EV552453       --> AGCTGAGAAAACTGGCAATGTTAAGGTGCCAGTGGCTTTAGTTGGTGAAT
EX750176       --> AGCTCAGAAAACTGGCAATGTTAAGGTGCCAGTGGCTTTAGTTGGTGAAT
FD970808       --> AGCTCAGAAAACCGGCAATGTTAAGGTGCCAGTGGCTTTAGTTGGTGAAT
EY898874       --> AGCTCAGAAAACTGGCAATGTTAAGGTGCCAGTGGCTTTAGTTGGTGAAT
FD965315       --> AGCTCAAAAAACTGGCAATGTTAAGGTGCCAGTGGCTTTAGTTGGTGAAT
FD532953       --> AGCTCAGAAAACTGGCAATGTTAAGGTGCCAGTGGCTTTAGTTAGTGAAT
FD964666       --> AGCTCAGAAAACTGGCAATGTTAAGGTGCCAGTGGCTTTAGTTGGTGAAT
EY900821       --> AGCTCAGAAAACTGGCAATGTTAAGGTGCCAGTGGCTTTAGTTGGTGAAT
EY900930       --> AGCTCAGAAAACTGGCAATGTTAAGGTGCCAGTGGCTTTAGTTGGTGAAT
EX757507       --> AGCTCAGAAAACCGGCAATGTTAAGGTGCCAGTGGCTTTAGTTGGTGAAT
EX758014       --> AGCTCAGAAAACCGGCAATGTTGAGGTGCCAGTGGCTTTAGTTGGTGAAT

               251    -    301
UN18962        --> CTGGCAACTTTGCTTCGTGGCTGTACATTGCAGCTGTGAAGATGAATTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- CTGGCAACTTTGCTTCGTGGCTGTACATTGCAGCTGTGAAGATGAATTCT  Raphanus raphanistrum subsp. maritimus
EY894808       <-- CTGGCAACTTTGCTTCATGGCTGTACATTGCAGCTGTGAAGATGAATTCT  Raphanus raphanistrum subsp. maritimus
EY896276       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD546502       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547370       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD960604       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX753708       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV552453       --> CTGGCAACTTTGCTTCGTGGCTGTACATTGCAGCTGTGAAGATGAATTCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750176       --> CTGGCAACTTTGCTTCGTGGCTGTACATTGCAGCTGTGAAGATGAATTCT  Raphanus raphanistrum subsp. maritimus
FD970808       --> CTGGCAACTTTGCGTCGTGGCTGTACATTGCAGCTGTGAAAATGAATTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898874       --> CTGGCAACTTTGCTTCATGGCTGTACATTGCAGCTGTGAAGATGAATTCT  Raphanus raphanistrum subsp. maritimus
FD965315       --> CTGGCAACTTTGCTTCGTGGCTGTACATTGCAGCTGTGAAGATGAATTCT  Raphanus raphanistrum subsp. maritimus
FD532953       --> CTGGCAACTTTGCTTCGTGGCTGTACATTGCAGCTGTGAAGATGAATTCT  Raphanus raphanistrum subsp. maritimus
FD964666       --> CTGGCAACTTTGTTTCGTGGCTGTACATTGCAGCTGTGAAGATGAATTCT  Raphanus raphanistrum subsp. maritimus
EY900821       --> CTGGCAACTTTGCTTCGTGGCTGTACATTGCAGCTGTGAAGATGAATTCT  Raphanus raphanistrum subsp. maritimus
EY900930       --> CTGGCAACTTTGCTTCGTGGCTGTACATTGCAGCTGTGAAGATGAATTCT  Raphanus raphanistrum subsp. maritimus
EX757507       --> CTGGCAACTTTGCGTCGTGGCTGTACATTGCAGCTGTGAAAATGAATTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758014       --> CTGGCAACTTTGCGTCGTGGCTGTACATTGCAGCTGTGAAAATGAATTCC  Raphanus raphanistrum subsp. raphanistrum (MS)

               301    -    351
UN18962        --> TTGGAAAAGATTGAGTCGGATCTTTCTGAGCTGGTTGAGGCGATGAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- TTGGAAAAGATTGAGTCGGATCTTTCTGAGCTGGTTGAGGCGATGAAGAC
EY894808       <-- TTGGAAAAGATTGAGTCGGATCTTTCTGAGCTGGTTGAGGCGATGAAGAC
EY896276       <-- ....tttgGATTGAGTCGGATCTTTCTGAGCTGGTTGAGGCGATGAAGAC
FD546502       <-- ....................TCTTTCTGAGCTGGTTGAGGCGATGAAGAC
EV547370       <-- ..................................................
FD960604       <-- ..................................................
EX753708       <-- ..................................................
EV552453       --> TTGGAAAAGATTGAGTCTGATCTTTCTGAGCTGGTTGAGGCGATGAAGAC
EX750176       --> TTGGAAAAGATTGAGTCGGATCTTTCTGAGCTGGTTGAGGCGATGAAGAC
FD970808       --> TTGGAAAAGATTGAGTCGGATCTTTCTGAGCTGGTTGAGGCGATGAAGAC
EY898874       --> TTGGAAAAGATTGAGTCGGATCTTTCTGAGCTGGTTGAGGCGATGAAGAC
FD965315       --> TTGGAAAAGATTGAGTCGGATCTTTCTGAGCTGGTTGAGGCGATGAAGAC
FD532953       --> TTGGAAAAGATTGAGTCGGATCTTTCTGAGCTGGTTGAGGCGATGAAGAC
FD964666       --> TTGGAAAAGATTGAGTCGGATCTTTCTGAGCTGGTTGAGGCGATGAAGAC
EY900821       --> TTGGA-----TTGAGTCGGATCTTTCTGAGCTGGTTGAGGCGATGAAGAC
EY900930       --> TTGGAAAAGATTGAGTCGGATCTTTCTGAGCTGGTTGAGGCGATGAAGAC
EX757507       --> TTGGAAAAGATTGAGTCGGATCTTTCTGAGCTGGTTGAGGCGATGAAGAC
EX758014       --> TTGGAAAAGATTGAGTCGGATCTTTCTGAGCTGGTTGAGGCGATGAAGAC

               351    -    401
UN18962        --> CAGCCCTACTTTCTCACAGTTTACTAAGGATCCCTCTGTTCCTAGAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- CAGCCCTACTTTCTCACAGTTTACTAAGGATCCCTCTGTTCCTAGAGAGA
EY894808       <-- CAGCCCTACTTTCTCACAGTTTACTAAGGATCCCTCTGTTCCTAGAGAGA
EY896276       <-- CAGCCCTACTTTCTCACAGTTTACTAAGGATCCCTCTGTTCCTAGAGAGA
FD546502       <-- CAGCCCTACTTTCTCACAGTTTACTAAGGATCCCTCTGTTCCTAGAGAGA
EV547370       <-- .....................................GTTCCTAGAGAGA
FD960604       <-- ..................................................
EX753708       <-- ..................................................
EV552453       --> CAGCCCTACTTTCTCACAGTTTACTAAGG.....................
EX750176       --> CAGCCCTACTTTCTCACAGTTTACTAAGGATCCCTCTGTTCCTAGAGAGA
FD970808       --> CAGCCCTACTTTCTCACAGTTTACTAAGGATCCCTCTGTTCCTAGAGAGA
EY898874       --> CAGCCCTACTTTCTCACAGTTTACTAAGGATCCCTCTGTTCCTAGAGAGA
FD965315       --> CAGCCCTACTTTCTCACAGTTTACTAAGGATCCCTCTGTTCCTAGAGAGA
FD532953       --> CAGCCCTACTTTCTCACAGTTTACTAAGGATCCCTCTGTTCCTAGAGAGA
FD964666       --> CAGCCCTACTTTCTCACAGTTTACTAAGGATCCCTCTGTTCCTAGAGAGA
EY900821       --> CAGCCCTACTTTCTCACAGTTTACTAAGGATCCCTCTGTTCCTAGAGAGA
EY900930       --> CAGCCCTACTTTCTCACAGTTTACTAAGGATCCCTCTGTTCCTAGAGAGA
EX757507       --> CAGCCCTACTTTCTCACAGTTTACTAAGGATCCCTCTGTTCCTAGAGAGA
EX758014       --> CAGCCCTACTTTCTCACAGTTTACTAAGGATCCCTCTGTTCCTAGAGAGA

               401    -    451
UN18962        --> CAAGACTTGCTGCTATTGTCGATGTTTGTGACAAAGCAAAGTTTGCAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- CAAGACTTGCTGCTATTGTCGATGTTTGTGACAAAGCAAAGTTTGCAGAA
EY894808       <-- CAAGACTTGCTGCTATTGTCGATGTTTGTGACAAAGCAAAGTTTGCAGAA
EY896276       <-- CAAGACTTGCTGCTATTGTCGATGTTTGTGACAAAGCAAAGTTTGCAGAA
FD546502       <-- CAAGACTGGCTGCTATTGTCGATGTTTGTGACAAAGCAAAGTTTGCAGAA
EV547370       <-- CAAGACTGGCTGCTATTGTCGATGTTTGTGACAAAGCAAAGTTTGCATAA
FD960604       <-- ............................................GCAGAA
EX753708       <-- ..................................................
EV552453       --> ..................................................
EX750176       --> CAAGACTTGCTGCTATTGTCGATGTTTGTGACAAAGCAAAGTTTGCAGAA
FD970808       --> CAAGACTTGCTGCTATTGTCGATGTTTGTGACAAAGCAAAGTTTGCAGAA
EY898874       --> CAAGACTTGCTGCTATTGTCGATGTTTGTGACAAAGCAAAGTTTGCAGAA
FD965315       --> CAAGACTTGCTGCTATTGTCGATGTTTGTGACAAAGCAAAGTTTGCAGAA
FD532953       --> CAAGACTTGCTGCTATTGTCGATGTTTGTGACAAAGCAAAGTTTGCAGAA
FD964666       --> CAAGACTTGCTGCTATTGTCGATGTTTGTTACAAAGCAAAGTTTGCAGAA
EY900821       --> CAAGACTTGCTGCTATTGTCGATGTTTGTGACAAAGCAAAGTTTGCAGAA
EY900930       --> CAAGACTTGCTGCTATTGTCGATGTTTGTGACAAAGCAAAGTTTGCAGAA
EX757507       --> CAAGACTTGCTGCTATTGTCGATGTTTGTGACAAAGCAAAGTTTGCAGAA
EX758014       --> CAAGACTTGCTGCTATTGTCGATGTTTGTGACAAAGCAAAGTTTGCAGAA

               451    -    501
UN18962        --> CCCACCAAGAACTTCCTCTCTTTGTTAGCTGAGAATGGGAAGCTGAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- CCCACCAAGAACTTCCTCTCTTTGTTAGCTGAGAATGGGAAGCTGAAGAA  Raphanus raphanistrum subsp. maritimus
EY894808       <-- CCCACTAAGAACTTCCTCTCTTTGTTAGCTGAGAATGGGAAGCTGAAGAA  Raphanus raphanistrum subsp. maritimus
EY896276       <-- CCCACCAAGAACTTCCTCTCTTTGTTAGCTGAGAATGGGAAGCTGAAGAA  Raphanus raphanistrum subsp. maritimus
FD546502       <-- CCCACCAAGAACTTCCTATCTTTGTTAGCTGAGAATGGGAAGCTGAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547370       <-- CCCACCAAGAACTTCCTATCTTTGTTAGCTGAGAATGGGAAGCTGAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD960604       <-- CCCACCAAGAACTTCCTTTCTTTGTTAGCTGAGAATGGGAAGCTGAAGAA  Raphanus raphanistrum subsp. maritimus
EX753708       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV552453       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750176       --> CCCACCAAGAACTTCCTCTCTTTGTTAGCTGAGAATGGGAAGCTGAAGAA  Raphanus raphanistrum subsp. maritimus
FD970808       --> CCCACCAAGAACTTCCTATCTTTGTTAGCTGAGAATGGGAAGCTGAAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898874       --> CCCACTAAGAACTTCCTCTCTTTGTTAGCTGAGAATGGGAAGCTGAAGAA  Raphanus raphanistrum subsp. maritimus
FD965315       --> CCCACCAAGAACTTCCTCTCTTTGTTAGCTGAGAATGGGAAGCTGAAGAA  Raphanus raphanistrum subsp. maritimus
FD532953       --> CCCACCAAGAACTTCCTCTCTTTGTTAGCTGAGAATGGGAAGCTGAAGAA  Raphanus raphanistrum subsp. maritimus
FD964666       --> CCCACCAAGAACTTCCTCTCTTTGTTAGCTGAGAATGGGAAGCTGAAGAA  Raphanus raphanistrum subsp. maritimus
EY900821       --> CCCACCAAGAACTTCCTCTCTTTGTTAGCTGAGAATGGGAAGCTGAAGAA  Raphanus raphanistrum subsp. maritimus
EY900930       --> CCCACCAAGAACTTCCTCTCTTTGTTAGCTGAGAATGGGAAGCTGAAGAA  Raphanus raphanistrum subsp. maritimus
EX757507       --> CCCACCAAGAACTTCCTATCTTTGTTAGCTGAGAATGGGAAGCTGAAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758014       --> CCCACCAAGAACTTCCTATCTTTGTTAGCTGAGAATGGGAAGCTGAAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)

               501    -    551
UN18962        --> CCTAGACGTGATTGTGAAAAAATTCATGCAGCTGACAACAGCACATAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- CCTAGACGTGATTGTGAAAAAATTCATGCAGCTGACAACAGCACATAGGG
EY894808       <-- CCTAGACGTGATTGTGAAAAAATTCATGCAGCTGACAACAGCATATAGGG
EY896276       <-- CCTAGACGTGATTGTGAAAAAATTCATGCAGCTGACAACAGCACATAGGG
FD546502       <-- CCTAGACGTGATTGTGAAAAAATTCATGCAGCTGACAACAGCACATAGGG
EV547370       <-- CCTAGACGTGATTGTGAAAAAATTCATGCAGCTGACAACAGCACATAGGG
FD960604       <-- CCTAGACGTGATTGTGAAAAAATTCATGCAGCTGACAACAGCACATAGGG
EX753708       <-- ..................................................
EV552453       --> ..................................................
EX750176       --> CCTAGACGTGATTGTGAAAAAATTCATGCAGCTGACAACAGCACATAGGG
FD970808       --> CCTAGACGTGATTGTGAAAAAATTCATACAGCTGACAACAGCACATAGGG
EY898874       --> CCTAGACGTGATTGTGAAAAAATTCATGCAGCTGACAACAGCATATAGGG
FD965315       --> CCTAGACGTGATTGTGAAAAAATTCATGCAGCTGACAACAGCACATAGGG
FD532953       --> CCTAGACGTGATTGTGAAAAAATTCATGCAGCTGACAACAGCACATAGGG
FD964666       --> CCTAGACGTGATTGTGA.................................
EY900821       --> CCTAGACGTGATTGTGAAAAAATTCATGCAGCTGACAACAGCACATAGGG
EY900930       --> CCTAGACGTGATTGTGAAAAAATTCATGCAGCTGACAACAGCACATAGGG
EX757507       --> CCTAGACGTGATTGTGAAAAAATTCATGCAGCTGACAACAGCACATAGGG
EX758014       --> CCTAGACGTGATTGTGAAAAAATTCATGCAGCTGACAACAGCACATAGGG

               551    -    601
UN18962        --> G-AGATGTCAAAGTCTTGGTTACCACTGTCATGCCACTT-CCCCCTGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- G-AGATGTCAAAGTCTTGGTTACCACTGTCATGCCACTT-CCCCCTGCTG  Raphanus raphanistrum subsp. maritimus
EY894808       <-- G-AGATGTCAAAGTCTTGGTTACCACTGTCATGCCACTT-CCCCCTGCTG  Raphanus raphanistrum subsp. maritimus
EY896276       <-- G-AGATGTCAAAGTCTTGGTTACCACTGTCATGCCACTC-CCCCCTGCTG  Raphanus raphanistrum subsp. maritimus
FD546502       <-- G-AGACGTCAAAGTCTTGGTTACCACTGTCATGCCACTT-CCCCCTGCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547370       <-- G-AGACGTCAAAGTCTTGGTTACCACTGTCATGCCACTT-CCCCCTGCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD960604       <-- G-AGATGTCAAAGTCTTGGTTACCACTGTCATGCCACTT-CCCCCTGCTG  Raphanus raphanistrum subsp. maritimus
EX753708       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV552453       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750176       --> GGAGATGTCAAAGTCTTGGTTACCACTGTCATGCCACTTTCCCCCTGCTG  Raphanus raphanistrum subsp. maritimus
FD970808       --> G-AGACGTCAAAGTCTTGGTTACCACTGTCATGCCACTT-CCCCCTGCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898874       --> G-AGATGTCAAAGTCTTGGTTACCACTGTCATGCCACTT-CCCCCTGCTG  Raphanus raphanistrum subsp. maritimus
FD965315       --> G-AGATGTCAAAGTCTTGGTTACCACTGTCATGCCACTT-CCCCCTGCTG  Raphanus raphanistrum subsp. maritimus
FD532953       --> G-AGATGTCAAAGTCTTGGTTACCACTGTCATGCCACTT-CCCCCTGCTG  Raphanus raphanistrum subsp. maritimus
FD964666       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY900821       --> G-AGATGTCAAAGTCTTGGTTACCACTGTCATGCCACTT-CCCCCTGCTG  Raphanus raphanistrum subsp. maritimus
EY900930       --> G-AGATGTCAAAGTCTTGGTTACCACTGTCATGCCACTT-CCCCCTGCTG  Raphanus raphanistrum subsp. maritimus
EX757507       --> G-AGACGTCAAAGTCTTGGTTACCACTGTC-TGCCACTT-CCCCCTGCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758014       --> G-AGACGTCAAAGTCTTGGTTACCACTGTCATGCCACTT-CCCCCTGCTG  Raphanus raphanistrum subsp. raphanistrum (MS)

               601    -    651
UN18962        --> AGGAGAAGGAACTTAAGGAGACACTTCAGGAGATCATTGGAGAAGGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- AGGAGAAGGAACTTAAGGAGACACTTCAGGAGATCATTGGAGAAGGGAAG
EY894808       <-- AGGAGAAGGAACTTAAGGAGACACTTCAGGAGATCATTGGAGAAGGGAAG
EY896276       <-- AGGAGAAGGAACTTAAGGAGACACTTCAGGAGATCATTGGAGAAGGGAAG
FD546502       <-- AGGAGAAGGAACTCAAAGAGACACTTCAGGAGATCATTGGAGAAGGGAAG
EV547370       <-- AGGAGAAGGAACTcaaaga...............................
FD960604       <-- AGGAGAAGGAACTTAAGGAGACACTTCAGGAGATCATTGGAGAAGGGA-G
EX753708       <-- .gggGAAGGAACTTAAGGAGACACTTCAGGAGATCATTGGAGAAGGGAAG
EV552453       --> ..................................................
EX750176       --> AGGAGAAGGAACTTAAGGAGACACT.........................
FD970808       --> AGGAGAAGGAACTTAGGGAGACACTTC.......................
EY898874       --> AGGAGAAGGAACTTAAGGAGACACTTCAGGAGATCATTGGAGAAGGGAAG
FD965315       --> AGGAGAAGGAACTTAAGGAGACACTTCAGGAGATCATTGGAGAAGGGAAG
FD532953       --> AGGAGAAGGAACTTAAGGAGACACTTCAGGAGATCATTGGAGAAGGGAAG
FD964666       --> ..................................................
EY900821       --> AGGAGAAAGAACTTAAAGAGACACTT........................
EY900930       --> AGGAG.............................................
EX757507       --> AGGAGAAGGAACTTAGGGAGACACTTCAGGAGATCATTGGAGAAGGGAAG
EX758014       --> AGGAGAAGGAAC......................................

               651    -    701
UN18962        --> AAAGTAACTGTGGAACAGAAGATTGATCCGAGTATATATGGAGGGCTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- AAAGTAACTGTGGAACAGAAGATTGATCCGAGTATATATGGAGGGCTAAT
EY894808       <-- AAAGTAACTGTGGAACAGAAGATTGATCCGAGTATATATGGAGGGCTAAT
EY896276       <-- AAAGTAACTGTGGAACAGAAGATTGATCCGAGTATATATGGAGGGCTAAT
FD546502       <-- AAAGTAACTGTGGAACAGAAGATTGATCCGAGTATATATGGAGGGCTAAT
EV547370       <-- ..................................................
FD960604       <-- AAAGTAACTGTGGAACAGAAGATTGATCCGAGTATATATGGAGGGCTAAT
EX753708       <-- AAAGTAACTGTGGAACAGAAGATTGATCCGAGTATATATGGAGGGGTAAT
EV552453       --> ..................................................
EX750176       --> ..................................................
FD970808       --> ..................................................
EY898874       --> AAAGTAACTGTGGAACAGAAGATTGATCCGAGTATATATGGAGGGCTAAT
FD965315       --> AAAGTAACTGTGGAACAGAAGATTGATCCGAGTATATATGGAGGGCTAAT
FD532953       --> AAAGTAACTGTGGAACAGAAGATTGATCCGAGTATATATGGAGGGCTAAT
FD964666       --> ..................................................
EY900821       --> ..................................................
EY900930       --> ..................................................
EX757507       --> AAAGTAACCGTGGAACAGAAGATTGATCCGAGTATCTATGGAGGGCTAAT
EX758014       --> ..................................................

               701    -    751
UN18962        --> AGTAGAGTTCCAACAAAAGGTGTTGGACATGTCAATCAGGACAAGAGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- AGTAGATTTCCAACAAAAGGTGTTGGACATGTCAATCAGGACAAGCGCAC
EY894808       <-- AGTAGAGTTCCAACAAAAGGTGTTGGACATGTCAATCAGGACAAGAGCAC
EY896276       <-- AGTAGAGTTCCAACAAAAGGTGTTGGACATGTCAATCAGGACAAGAGCAC
FD546502       <-- AGTAGAGTTCCAGCAAAAGGTGTTGGACATGTCAATCAGGACAAGAGCAC
EV547370       <-- ..................................................
FD960604       <-- AGTAGAGTTCCAACAAAAGGTGTTGGACATGTCAATCAGGACAAGAGCAC
EX753708       <-- AGTAGAGTTCCAACAAAAGGTGTTGGACATGTCAATCAGGACAAGAGCAC
EV552453       --> ..................................................
EX750176       --> ..................................................
FD970808       --> ..................................................
EY898874       --> AGTAGAGTTCCAACAAAAG-TGTTGGACATGTCAATCAG-ACAAGAGCAC
FD965315       --> AGTAGAGTCCCA-CAAAAG-TGTTGGACATGTCAATCAG-AC-AGAGCAC
FD532953       --> AGTAGATTTCCAACAAAAG-TGTTGGACATGTCAATCAG-ACAAGCGCAC
FD964666       --> ..................................................
EY900821       --> ..................................................
EY900930       --> ..................................................
EX757507       --> AGTAGAGTTCaac.....................................
EX758014       --> ..................................................

               751    -    801
UN18962        --> AGCAGATGGAGAGGCTCCTCCGTGAACCTGTTGACCTCAGCAACCTCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- AGCAGATGGAGAGGCTCCTCCGTGAACCTGTTGACCTCAGCAACCTTTGA
EY894808       <-- AGCAGATGGAGAGGCTCCTCCGTGAACCTGTTGACCTCAGCAACCTCTGA
EY896276       <-- AGCAGATGGAGAGGCTCCTCCGTGAACCTGTTGACCTCAGCAACCTCTGA
FD546502       <-- AGCAGATGGAGAGGCTCCTCCGTGAACCTGTTGACCTCAGCAACCTCTAA
EV547370       <-- ..................................................
FD960604       <-- AGCAGATGGAGAGGCTCCTCCGTGAACCTGTTGACCTCAGCAACCTCTGA
EX753708       <-- AGCAGATGGAGAGGCTCCTCCGTGAACCTGTTGACCTCAGCAACCTTTGA
EV552453       --> ..................................................
EX750176       --> ..................................................
FD970808       --> ..................................................
EY898874       --> AGCAGATGGAGAGGCTC.................................
FD965315       --> AGCAGATGGAGAG-CTCCTCCGTGA-CCTGTTGAC-TCAGCA-CCTCTGA
FD532953       --> AGCAGATGGAGAG.....................................
FD964666       --> ..................................................
EY900821       --> ..................................................
EY900930       --> ..................................................
EX757507       --> ..................................................
EX758014       --> ..................................................

               801    -    851
UN18962        --> AAATCTTTGAGAGTTTTCCCTTAAGAAACATGTTTGTGATGCTGCAAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- AAATCTTTGAGAGTTTTCCCTTAAGAAACATGTTTGTGATGCTGCAAAGC
EY894808       <-- AAATCTTTGAGAGTTTTCCCTTAAGAAACATGTTTGTGATGCTGCAAAGC
EY896276       <-- AAATCTTTGAGAGTTTTCCCTTAAGAAACATGTTTGTGATGCTGCAAAGC
FD546502       <-- AAATCTTTGAGAGTTTTCCCTTAAGAAACATGTTTGTGATGCTGCAAAGC
EV547370       <-- ..................................................
FD960604       <-- AAATCTTTGAGAGTTTTCCCTTAAGAAACATGTTTGTGATGCTGCAAAGC
EX753708       <-- AAATTTTTGAGAGTTTTCCCTTAAGAAACATGTTTGTGATGCTGCAAAGC
EV552453       --> ..................................................
EX750176       --> ..................................................
FD970808       --> ..................................................
EY898874       --> ..................................................
FD965315       --> AA-TCTTTGAGA......................................
FD532953       --> ..................................................
FD964666       --> ..................................................
EY900821       --> ..................................................
EY900930       --> ..................................................
EX757507       --> ..................................................
EX758014       --> ..................................................

               851    -    901
UN18962        --> AAACCCAGTTGACAAAAATAAAACATTATGACCCTCTCCACCTGGGAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- AAACCCAGTTGACAAAAATAAAACATTATGACCCTCTCCACCTGGGAAAC
EY894808       <-- AAACCCAGTTGACAAAAATAAAACATTATGACCCTCTCCACCTGGGAAAC
EY896276       <-- AAACCCAGTTGACAAAAATAAAACATTATGACCCTCTCCACCTGGGAAAC
FD546502       <-- AAACCCAGTTGACAAAAATAAAACATTATGACCC-CTCAACCTGGGAAAC
EV547370       <-- ..................................................
FD960604       <-- AAACCCAGTTGACAAAAATAAAACATTATGACCCTCTCCACCTGGGAAAC
EX753708       <-- AAACCCAGTTGACAAAAATAAAACATTATGACCCTTTCCACCTGGGAAAC
EV552453       --> ..................................................
EX750176       --> ..................................................
FD970808       --> ..................................................
EY898874       --> ..................................................
FD965315       --> ..................................................
FD532953       --> ..................................................
FD964666       --> ..................................................
EY900821       --> ..................................................
EY900930       --> ..................................................
EX757507       --> ..................................................
EX758014       --> ..................................................

               901    -    951
UN18962        --> AATTACATTGTCGTTTTTTTTGAAATTTGTCATTGCATTTTGTTTCCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- AATTACATTGTCGTTTTTTTTG............................
EY894808       <-- AATTACATTGTCGTTTTTTTTGAAATTTGTCATTGCATTTTGTTTCCAAT
EY896276       <-- AATTACATTGTCGTTTTTTTTGAAATTTGTCATTGCATTTTGTTTCC...
FD546502       <-- AATTAC............................................
EV547370       <-- ..................................................
FD960604       <-- AATTACATTGTCGTTTTTTTTGAAATTTGTCATTGCATTTTGTTTCC...
EX753708       <-- AATTACATTGTCGTTTTTTTTGAAATTTGTCATTGCATTTTGTTTCCAAT
EV552453       --> ..................................................
EX750176       --> ..................................................
FD970808       --> ..................................................
EY898874       --> ..................................................
FD965315       --> ..................................................
FD532953       --> ..................................................
FD964666       --> ..................................................
EY900821       --> ..................................................
EY900930       --> ..................................................
EX757507       --> ..................................................
EX758014       --> ..................................................

               951    -   1001
UN18962        --> TGTTGTTTGCTTCGAAATAAGCTTTTGGAGATTATTTACATATGAAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- ..................................................
EY894808       <-- T.................................................
EY896276       <-- ..................................................
FD546502       <-- ..................................................
EV547370       <-- ..................................................
FD960604       <-- ..................................................
EX753708       <-- TGTTGTTTGCTTCGAAATAAGCTTTTGGAGATTATTTACATATGAAAGAG
EV552453       --> ..................................................
EX750176       --> ..................................................
FD970808       --> ..................................................
EY898874       --> ..................................................
FD965315       --> ..................................................
FD532953       --> ..................................................
FD964666       --> ..................................................
EY900821       --> ..................................................
EY900930       --> ..................................................
EX757507       --> ..................................................
EX758014       --> ..................................................

               1001   -   1051
UN18962        --> TAAAAATTCAATTTGGTCAAACATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~
FD529277       <-- .........................
EY894808       <-- .........................
EY896276       <-- .........................
FD546502       <-- .........................
EV547370       <-- .........................
FD960604       <-- .........................
EX753708       <-- TAAAAATTCAATTTGGTCAAACATG
EV552453       --> .........................
EX750176       --> .........................
FD970808       --> .........................
EY898874       --> .........................
FD965315       --> .........................
FD532953       --> .........................
FD964666       --> .........................
EY900821       --> .........................
EY900930       --> .........................
EX757507       --> .........................
EX758014       --> .........................