1      -     51
UN19105        --> GGAAGAAACCTGTAACAACTTCACTTTGTAACCGGAGAAGATGAAGGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916333       --> GGAAGAAACCTGTAACAACTTCACTTTGTAACCGGAGAAGATGAAGGTGG
EW717710       --> ....................ggACTTTGTAACCGGAGAAGATGAAGGTGG
FD970961       --> .........................ggGTAACCGGAGAAGACGAAGGTGG
FD571799       --> .............................gACCGGAGAAGATGAAGGTGG
EW724110       --> ..................................................
EV537615       --> ..................................................

               51     -    101
UN19105        --> TAGATAAGATCAAGTCATGGACCGACGAAGGCAAAACGACCTTCTCCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916333       --> TAGATAAGATCAAGTCATGGACCGACGAAGGCAAAACGACCTTCTCCTTC
EW717710       --> TAGATAAGATCAAGTCATGGACCGACGAAGGCAAAACGACCTTCTCCTTC
FD970961       --> TAGATAAGATCAAGTCATGGACCGACGAAGGCAAAACGACCTTCTCCTTC
FD571799       --> TAGATAAGATCAAGTCATGGACCGACTAAGGCAAAACGACCTTCTCCTTC
EW724110       --> ...........AAGTCATGGACCGACGAAGGCAAAACGACCTTCTCCTTC
EV537615       --> ..................................................

               101    -    151
UN19105        --> GAGTTCTTCCCACCGAGGACGGAGGATGGAGTCGACAACCTCTTCGAGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916333       --> GAGTTCTTCCCACCGAGGACGGAGGATGGAGTCGACAACCTCTTCGAGCG
EW717710       --> GAGTTCTTCCCACCGAGGACGGAGGATGGAGTCGACAACCTCTTCGAGCG
FD970961       --> GAGTTCTTCCCACCGAGGACGGAGGATGGAGTCGACAACCTCTTCGAGCG
FD571799       --> GAGTTCTTCCCACCGAGGACGGAGGATGGAGTCGACAACCTCTTCGAGCG
EW724110       --> GAGTTCTTCCCACCGAGGACGGAGGATGGAGTCGACAACCTCTTCGAGCG
EV537615       --> .......TCCCACCGAGGACGGAAGATGGAGTCGACAACCTCTTCGAGCG

               151    -    201
UN19105        --> TATGGATCGTCTCGTCGCATACGGTCCAGCCTTCTGCGATATCACGTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916333       --> TATGGATCGTCTCGTCGCATACGGTCCAGCCTTCTGCGACATCACATGGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW717710       --> TATGGATCGTCTCGTCGCATACGGTCCAGCCTTCTGCGATATCACGTGGG  Raphanus sativus var. oleiformis
FD970961       --> TATGGATCGTCTCGTCGCATACGGTCCAGCCTTCTGCGACATCACGTGGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571799       --> TATGGATCGTCTCGTCGCATACGGTCCAGCCTTCTGCGATATCACGTGGG  Raphanus sativus cv Early Scarlet Globe
EW724110       --> TATGGATCGTCTCGTCGCATACGGTCAAGCCTTCTGCGATATCACGTGGG  Raphanus sativus cv Early Scarlet Globe
EV537615       --> TATGGATCGTCTCGTCGCATACGGTCCAGCCTTCTGCGACATCACGTGGG  Raphanus raphanistrum subsp. raphanistrum (MS)

               201    -    251
UN19105        --> GAGCTGGTGGAACAACGGCGGATCTCACGCTCGACATTGTCTCTAGGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916333       --> GAGCTGGTGGAACAACGGCAGATCTCACGCTCGATATCGTCTCGAGGATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW717710       --> GAGCTGGTGGAACAACGGCGGATCTCACGCTCGACATTGTCTCTAGGATG  Raphanus sativus var. oleiformis
FD970961       --> GAGCTGGTGGAACAACGGCGGATCTCACGCTCGATATTGTCTCGAGGATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571799       --> GAGCTGGTGGAACAACGGCGGATCTCACGCTCGACATTGTCTCTAGGATG  Raphanus sativus cv Early Scarlet Globe
EW724110       --> GAGCTGGTGGAACAACGGCGGATCTCACGCTCGACATTGTCTCTAGGATG  Raphanus sativus cv Early Scarlet Globe
EV537615       --> GAGCTGGTGGAACAACGGCGGATCTCACGCTCGACATCGTCTCGAGGATG  Raphanus raphanistrum subsp. raphanistrum (MS)

               251    -    301
UN19105        --> CAGAACGTTGTCTGCGTCGAGAGCATGATGCATCTCACGTGTACTAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916333       --> CAGAACGTTGTCTGCGTGGAGAGCATGATGCATCTCACGTGCACGAACAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW717710       --> CAGAACGTTGTCTGCGTCGAGAGCATGATGCATCTCACGTGTACTAACAT  Raphanus sativus var. oleiformis
FD970961       --> CAGAACGTTGTCTGCGTCGAGAGCATGATGCATCTCACGTGCACTAACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571799       --> CAGAACGTTGTCTGCGTCGAGAGCATGATGCATCTCACGTGTACTAACAT  Raphanus sativus cv Early Scarlet Globe
EW724110       --> CAGAACGTTGTCTGCGTCGAGAGCATGATGCATCTCACGTGTACTAACAT  Raphanus sativus cv Early Scarlet Globe
EV537615       --> CAAAACGTTGTCCGCGTCGAGAGCATGATGCATCTCACGTGCACTAACAT  Raphanus raphanistrum subsp. raphanistrum (MS)

               301    -    351
UN19105        --> GCCTGTTGAGAAGATCGATCATGCGCTTGAGACGATACGGTCTAATGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916333       --> GCCTGTCGAGAAGATCGATCATGCGCTCGAGACGATACGGTCTAATGGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW717710       --> GCCTGTTGAGAAGATCGATCATGCGCTTGAGACGATACGGTCTAATGGGA  Raphanus sativus var. oleiformis
FD970961       --> GCCTGTTGAGAAGATCGATCATGCGCTCGAGACGATAAGGTCTAATGGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571799       --> TCCTGTTGAGAAGATCGATCATGCGCTTGAGACGATACGGTCTAATGGGA  Raphanus sativus cv Early Scarlet Globe
EW724110       --> GCCTGTTGAGAAGATCGATCATGCGCTTGAGACGATACGGTCTAATGGGA  Raphanus sativus cv Early Scarlet Globe
EV537615       --> GCCTGTTGAGAAGATCGATCATGCGCTCGAGACGATACGGTCTAATGGGA  Raphanus raphanistrum subsp. raphanistrum (MS)

               351    -    401
UN19105        --> TTCAGAACGTTCTTGCGCTTAGAGGTGATCCTCCTCACGGTGAGAACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916333       --> TTCAGAACGTTCTTGCGCTTA-AGGAGATCCTCCTCACGGTGAGAACAAG
EW717710       --> TTCAGAACGTTCTTGCGCTTAGAGGTGATCCTCCTCACGGTGAGAACAAG
FD970961       --> TTCAGAACGTTCTTGCACTTAGAGGTGATCCTCCTCACGGTGAGAACAAG
FD571799       --> TTCAGAACGTTCTTGCGCTTAGAGGTGATCCTCCTCACGGTGAGAACAAG
EW724110       --> TTCAGAACGTTCTTGCGCTTAGAGGTGATCCTCCTCACGGTGAGAACAAG
EV537615       --> TTCAGAACGTTCTTGCGCTTAGAGGAGATCCTCCTCATGGTGAGAACAAG

               401    -    451
UN19105        --> TTTGTTCAGGTTGAAGGAGGGTTTGGTTGCGCTTTGGATCTTGTGAATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916333       --> TTTGTTCAGGTTGAAGGAGGGTTTGGTTGCGCTTTGGATCTTGTGAACCA
EW717710       --> TTTGTTCAGGTTGAAGGAGGGTTTGGTTGCGCTTTGGATCTTGTGAATCA
FD970961       --> TTTGTTCAGGTTGAAGGAGGGTTTGGCTGCGCTTTGGATCTTGTGAATCA
FD571799       --> TTTGTTCAGGTTGAAGGAGGGTTTGGTTGCGCTTTGGATCTTGTGAATCA
EW724110       --> TTTGTTCAGGTTGAAGGAGGGTTTGGTTGCGCTTTGGATCTTGTGAATCA
EV537615       --> TTTGTTCAGGTTGAAGGAGGGTTTGGCTGCGCTTTGGATCTTGTGAATCA

               451    -    501
UN19105        --> TATTAGGAGCAAGTATGGTGATTACTTTGGTGTCGCCGTTGCTGGTTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916333       --> TATTAGGAGCAAGTATGGTGATTACTTTGGTGTCGCCGTTGCTGGTTATC
EW717710       --> TATTAGGAGCAAGTATGGTGATTACTTTGGTGTCGCCGTTGCTGGTTATC
FD970961       --> TATTAGGAGCAAGTATGGTGATTACTTTGGTGTCGCCGTTGCTGGTTATC
FD571799       --> TATTAGGAGCAAGTATGGTGATTACTTTGGTGTCGCCGTTGCTGGTTATC
EW724110       --> TATTAGGAGCAAGTATGGTGATTACTTTGGTGTCGCCGTTGCTGGTTATC
EV537615       --> TATTAGGAGCAAGTATGGTGATTACTTTGGTGTCGCCGTTGCTGGTTATC

               501    -    551
UN19105        --> CTGAGGCTCATCCTGATGTCATTGGTGAAAATGGCCTAGCGTCCAAGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916333       --> CTGAGGCTCATCCTGATGACATTGGTGAAAATGGCCTAGCGTCCAAAGAA
EW717710       --> CTGAGGCTCATCCTGATGTCATTGGTGAAAATGGCCTAGCGTCCAAGGAA
FD970961       --> CTGAGGCTCATCCTGATGTCATTGGTGAAAATGGCCTAGCGTCCAAGGAA
FD571799       --> CTGAGGCTCATCCTGATGTCATTGGTGAAAATGGCCTAGCGTCCAAGGAA
EW724110       --> CTGAGGCTCATCCTGATGTCATTGGTGAAAATGGCCTAGCGTCCAAGGAA
EV537615       --> CTGAGGCTCATCCTGATGTCATTGGTGAAAATGGCCTAGCGTCCAAGGAA

               551    -    601
UN19105        --> GCTTATGAGAGTGATCTTGAGTACCTTAAGAAAAAGGTTGATGCTGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916333       --> GCTTATGAGAGTGATCTTGAGTACCTTAAGAAAAAG-TTGATGCTGGAGC
EW717710       --> GCTTGTGAGAGTGATCTTGAGTACCTTAAGAAAAAGGTTGATGCTGGAGC
FD970961       --> GCTTATGAGAGTGATCTTCAGTACCT........................
FD571799       --> GCTTATGAGAGTGATCTTGAGTACCTTAAGAAAAAGGTTGATGCTGGAGC
EW724110       --> GCTTATGAGAGTGATCTTGAGTACCTTAAGAAAAAGGTTGATGCTGGAGC
EV537615       --> GCTTATGAGAGTGATCTTGAGTACCTTAAGAAAAAGGTTGTTGCTGGAGC

               601    -    651
UN19105        --> TGATCTGATTGTTACTCAGCTTTTCTTTGACACTGATATACTCTTAAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916333       --> TGATCTGATTGTTACTCAGCTTTTCTTTGACACTGATGTACTCTTAAAAT
EW717710       --> TGATCTGATTGTTACTCAGCTTTTCTTTGACACTGATATACTCTTAAA-T
FD970961       --> ..................................................
FD571799       --> TGATCTGATTGTTACTCAGCTTTTCTTTGACACTGATATACTCTTAAAAT
EW724110       --> TGATCTGATTGTTACTCAGCTTTTCTTTGACACTGATATACTCTTAAAAT
EV537615       --> TGATCTGATTGTTACTCAGCTTTTCTTTGACACTGATATACTCTTAAAGT

               651    -    701
UN19105        --> TTGTGAATGACTGTCGGCAAATTGGTATCAAGTGTCCCATTGTTCCTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916333       --> TTGTGAATGACTGT....................................
EW717710       --> TTGTGAATGACTGTCGGCAA-TTGGTATCAAGTGTCCCATTGTTCCTGGA
FD970961       --> ..................................................
FD571799       --> TTGTGAATGACTGTCGGCAAATTGGTATCAAGTGTCCCATTGTTCCTGGA
EW724110       --> TTGTGAATGACTGTCGGCAAATTGGTATCAAGTGTCCCATTGTTCCTGGA
EV537615       --> TTGTGAATGACTGTCGGCAAATTGGTATCAAGTGTCCCATTG........

               701    -    751
UN19105        --> ATCATGCCCATTAATAACTACAAAGGATTCTTGCGTATGATTGGTTTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916333       --> ..................................................
EW717710       --> ATCATGCCCATTA-T-ACTACAAAGatctgcg..................
FD970961       --> ..................................................
FD571799       --> ATCATGCCCATTAATAACTACAAAGGATTCTTGCGTATGATTGGTTTTTG
EW724110       --> ATCATGCCCATTAATAAC................................
EV537615       --> ..................................................

               751    -    801
UN19105        --> CAGACCAAGATACCAGCTGAAGTCATGGCAGCATTGGAGCCTATCCAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916333       --> ..................................................
EW717710       --> ..................................................
FD970961       --> ..................................................
FD571799       --> CAGACCAAGATACCAGCTGAAGTCATGGCAGCATTGGAGCCTATCCAGGA
EW724110       --> ..................................................
EV537615       --> ..................................................

               801    -    851
UN19105        --> T
                   ~
EY916333       --> .
EW717710       --> .
FD970961       --> .
FD571799       --> T
EW724110       --> .
EV537615       --> .