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Alignment for radish unigene UN19133

               1      -     51
UN19133        --> GGGAGAATAATGGCTTCTCTCGTCTCTTCTCCTCATGCCTTGACTCTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- ..................................................
EW728747       <-- ..................................................
EV570533       <-- ..................................................
EW738341       <-- ..................................................
EV570532       <-- ..................................................
FD941634       --> GGGAGAATAATGGCTTCTCTCGTCTCTTCTCCTCATGCCTTGACTCTTCC
EW723557       --> ..................................................
EV565214       --> ..................................................
FD941493       --> ..................................................
AB447922       --> ..................................................

               51     -    101
UN19133        --> CTTCTCCTCTCCTCACCGTCTCCATCACACCCCTCCCAATCTCTCCACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- ..................................................
EW728747       <-- ..................................................
EV570533       <-- ..................................................
EW738341       <-- ..................................................
EV570532       <-- ..................................................
FD941634       --> CTTCTCCTCTCCTCACCGTCTCCATCACACCCCTCCCAATCTCTCCACTC
EW723557       --> ..................................................
EV565214       --> ..................................................
FD941493       --> ..................................................
AB447922       --> ..................................................

               101    -    151
UN19133        --> TCCGTTTCTCCCGACCAATCAAAAACAACTCCCTCCGATGCTCCGTCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- ..................................................
EW728747       <-- ..................................................
EV570533       <-- ..................................................
EW738341       <-- ..................................................
EV570532       <-- ..................................................
FD941634       --> TCCGTTTCTCCCGACCAATCAAAAACAACTCCCTCCGATGCTCCGTCTCG
EW723557       --> ..................................................
EV565214       --> ..................................................
FD941493       --> ..................................................
AB447922       --> ..................................................

               151    -    201
UN19133        --> ATCGAGAAAGAAGTCCCCGAAACCGAACGACCCTTCACTTTCCTCAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- ..................................................
EW728747       <-- ..................................................
EV570533       <-- ..................................................
EW738341       <-- ..................................................
EV570532       <-- ..................................................
FD941634       --> ATCGAGAAAGAAGTCCCCGAAACCGAACGACCCTTCACTTTCCTCAGAGA
EW723557       --> ..................................................
EV565214       --> ..................................................
FD941493       --> ..................................................
AB447922       --> ..................................................

               201    -    251
UN19133        --> CTCCGACGATTCCTCCACTCACTCTTCTTCTCCAACTTCGGTCAGAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- ..................................................
EW728747       <-- ..................................................
EV570533       <-- ..................................................
EW738341       <-- ..................................................
EV570532       <-- ..................................................
FD941634       --> CTCCGACGATTCCTCCACTCACTCTTCTTCTCCAACTTCGGTCAGAGCTC
EW723557       --> ..................................................
EV565214       --> ..................................................
FD941493       --> ..................................................
AB447922       --> ..................................................

               251    -    301
UN19133        --> GTTTCGAGACCATGATTAGAGCGGCGCAGGACAACGTCTGCGAGGCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- ..................................................
EW728747       <-- ..................................................
EV570533       <-- ..................................................
EW738341       <-- ..................................................
EV570532       <-- ..................................................
FD941634       --> GTTTCGAGACCATGATTAGAGCGGCGCAGGACAACGTCTGCGAGGCCATC
EW723557       --> ..................................................
EV565214       --> ..................................................
FD941493       --> ..................................................
AB447922       --> ..................................................

               301    -    351
UN19133        --> GAAGCCGTAGAAGGCGGTCCGAAGTTCAGAGAAGACGTCTGGTCTCGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- ..................................................
EW728747       <-- ..................................................
EV570533       <-- ..................................................
EW738341       <-- ..................................................
EV570532       <-- ..................................................
FD941634       --> GAAGCCGTAGAAGGCGGTCCGAAGTTCAGAGAAGACGTCTGGTCTCGACC
EW723557       --> ............................................TCGACC
EV565214       --> ..................................................
FD941493       --> ..................................................
AB447922       --> ..................................................

               351    -    401
UN19133        --> AGGCGGAGGAGGCGGGATCAGCAGAGTTCTGCAGGACGGGAACGTGTTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- ..................................................
EW728747       <-- ..................................................
EV570533       <-- ..................................................
EW738341       <-- ..................................................
EV570532       <-- ..................................................
FD941634       --> AGGCGGAGGAGGCGGGATCAGCAGAGTTCTGCAGGACGGGAACGTGTTCG
EW723557       --> AGGCGGAGGAGGCGGGATCAGCAGAGTTCTGCAGGACGGGAACGTGTTCG
EV565214       --> ........GAGGAGGGATCAGCAGAGTTCTGCAGGACGGGAACGTGTTCG
FD941493       --> ..................................................
AB447922       --> ..................................................

               401    -    451
UN19133        --> AGAAAGCTGGGGTTAACGTCTCTGTGGTTTACGGTGTGATGCCTCCCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- ..................................................
EW728747       <-- ..................................................
EV570533       <-- ..................................................
EW738341       <-- ..................................................
EV570532       <-- ..................................................
FD941634       --> AGAAAGCTGGGGTTAACGTCTCTGTGGTTTACGGTGTGATACCTCCCGAG
EW723557       --> AGAAAGCTGGGGTTAACGTCTCTGTGGTTTACGGTGTGATGCCTCCCGAG
EV565214       --> AGAAAGCTGGGGTGAACGTCTCTGTGGTTTACGGTGTGATGCCTCCCGAG
FD941493       --> ..................................................
AB447922       --> ..................................................

               451    -    501
UN19133        --> GCGTACAGAGCAGCTAAAGGGCTCTGCTTCTTCGGATCAGAAGCCTGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- ..................................................
EW728747       <-- ..................................................
EV570533       <-- ..................................................
EW738341       <-- ..................................................
EV570532       <-- ..................................................
FD941634       --> GCGTACAGAGCAGCTAAAGG-CTCTGCTTCTTCGGATCAGAAGCCTGGTC
EW723557       --> GCGTACAGAGCAGCTAAAGGGCTCTGCTTCTTCGGATCAGAAGCCTGGTC
EV565214       --> GCGTACAGAGCAGCTAAAGG-CTCTGCTTCTTCGGATCAGAAGCCTGGTC
FD941493       --> ..................................................
AB447922       --> ..................................................

               501    -    551
UN19133        --> CGGTTCCGTTCTTCGCAGCTGGGGTTAGCTCGGTTTTGCATCCCAAGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- ..................................................
EW728747       <-- ..................................................
EV570533       <-- ..................................................
EW738341       <-- ..................................................
EV570532       <-- ..................................................
FD941634       --> CGGTTCCGTTCTTCGCAGCTGGGGTTAGCTCGGTTTTGCATCCCAAGAAC
EW723557       --> CGGTTCCGTTCTTCGCAGCTGGGGTTAGCTCGGTTTTGCATCCCAAGAAC
EV565214       --> CGGTTCCGTTCTTCGCAGCTGGGGTTAGCTCGGTTTTGCATCCCAAGAAC
FD941493       --> ..................................................
AB447922       --> ..................................................

               551    -    601
UN19133        --> CCTTTCGCTCCGACTCTGCATTTTAACTATCGTTATTTCGAGACTGATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- ..................................................
EW728747       <-- ..................................................
EV570533       <-- ..................................................
EW738341       <-- ..................................................
EV570532       <-- ..................................................
FD941634       --> CCTTTCGCTCCGACTCTGCATTTTAACTATCGTTATTTCGAGACTGATGC
EW723557       --> CCTTTCGCCCCGACTCTGCATTTTAACTATCGTTATTTCGAGACTGATGC
EV565214       --> CCTTTCGCTCCGACTCTGCATTTTAACTATCGTTATTTCGAGACTGATGC
FD941493       --> ..................gATTTTAATTATCGTTACTTCGAGACTGATGC
AB447922       --> ..................................................

               601    -    651
UN19133        --> TCCCAAGGATGTTCCTGGAGCTCCGAGGCAGTGGTGG-TTCGGTGGTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- .....................TCCGAGGCAGTGGTGG-TTCGGTGGTGGA
EW728747       <-- ..................................................
EV570533       <-- ..................................................
EW738341       <-- ..................................................
EV570532       <-- ..................................................
FD941634       --> TCCCAAGGATGTTCCTGGAGCTCCGAGGCAGTGGTGGGTTCGGTGGTGGA
EW723557       --> TCCCAAGGATGTTCCTGGAGCTCCGAGGCAGTGGTGGGTTCGGTGGTGGA
EV565214       --> TCCCAAGGATGTTCCTGGAGCTCCGAGGCAGTGGTGG-TTCGGTGGTGGA
FD941493       --> TCCCAAGGATGTTCCTGGAGCTCCGAGGCAGTGGTGG-TTCGGTGGTGGA
AB447922       --> ..................................................

               651    -    701
UN19133        --> ACTGATTTCACACCAGCTTACATCTTCGAAGACGATGTCAAGCATTTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- ACTGATTTCACACCAGCTTACATCTTCGAAGACGATGTCAAGCATTTCCA
EW728747       <-- .........................TCGGAGACGATGTCAAGCATTTCCA
EV570533       <-- .............................AGACGATGTCAAGCATTTCCA
EW738341       <-- ..............................GACGATGTCAAGCATTTCCA
EV570532       <-- ....................................GTCAAGCATTTCCA
FD941634       --> ACTGATTTCACACCAGCTTACATCTTCGAAGACGATGTCAAGCATTTCCA
EW723557       --> ACTGATTTCACACCAGCTTACATCTTCGGAGACGATGTCAAGCATTTCCA
EV565214       --> ACTGATTTCACACCAGCTTACATCCTCGAAGACGATGTCAAGCATTTCCA
FD941493       --> ACTGATTTCACTCCAGCTTACATCTTCGAAGACGATGTCAAGCATTTCCA
AB447922       --> ..................................................

               701    -    751
UN19133        --> TTCGATTCAAAAGCAAGCGTGTGACAAGTTTGACCCTTCCTTCTATCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- TTCGATTCAAAAGCAAGCGTGTGACAAGTTTGACCCTTCCTTCTATCCAC  Raphanus sativus var. oleiformis
EW728747       <-- TTCGATTCAAAAGCAAGCGTGTGACAAGTTTGACCCTTCCTTCTATCCAC  Raphanus sativus cv Early Scarlet Globe
EV570533       <-- TTCGATTCAAAAACAAGCGTGTGACAAGTTTGACCCTTCCTTCTATCCAC  Raphanus raphanistrum subsp. landra
EW738341       <-- TTCGATTCAAAAGCAAGCGTGTGACAAGTTTGACCCTTCCTTCTATCCAC  Raphanus sativus cv Rat-Tail Radish #3870
EV570532       <-- TTCGATTCAAAAACAAGCGTGTGACAAGTTTGACCCTTCCTTCTATCCAC  Raphanus raphanistrum subsp. landra
FD941634       --> TTCGATTCAAAAGCAAGCGTGTGACA-GTTTGACC-TTCCTTCTATC-AC  Raphanus sativus var. oleiformis
EW723557       --> TTCGATTCAAAAGCAAGCGTGTGACAAGTTTGACCCTTCCTTCTATCCAC  Raphanus sativus cv Early Scarlet Globe
EV565214       --> TTCGATTCAAAAACAAGCGTGTGACAAGTTTGACCCTTCCTTCTATCCAC  Raphanus raphanistrum subsp. landra
FD941493       --> TTCTATTCAAAAACAAGCGTGTGACAAGTTTGACCCTTCCTTCTATCCAC  Raphanus sativus var. oleiformis
AB447922       --> ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger

               751    -    801
UN19133        --> GATTCAAGAAGTGGTGCGATGACTACTTTTACATCAAGCACCGTGATGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- GATTCAAGAAGTGGTGCGATGACTACTTTTACATCAAGCACCGTGATGAG
EW728747       <-- GATTCAAGAAGTGGTGCGATGACTACTTTTACATCAAGCACCGTGATGAG
EV570533       <-- GATTCAAGAAGTGGTGCGATGACTACTTTTACATCAAGCACCGTGATGAG
EW738341       <-- GATTCAAGAAGTGGTGCGATGACTACTTCTACATCAAGCACCGTGACGAG
EV570532       <-- GATTCAAGAAGTGGTGCGATGACTACTTTTACATCAAGCACCGTGATGAG
FD941634       --> GATTCAga..........................................
EW723557       --> GATTCAAGAAGTGGTGCGATGACTACTTTTACATCAAGCACCGTGATGAG
EV565214       --> GATTCAAGAAGTGGTGCGATGACTACTTTTACATCAAGCACCGTGATGAG
FD941493       --> GATTCAAGAAGTGGTGCGATGACTACTTTTACATCAAGCACCGTGATGAG
AB447922       --> ..................................................

               801    -    851
UN19133        --> AGACGAGGACTTGGAGGGATATTTTTTGACGATCTTAATGACTATGATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- AGAAGAGGACTTGGGGGGATATTTTTTGACGATCTTAATGATTATGATCA  Raphanus sativus var. oleiformis
EW728747       <-- AGAAGAGGACTTGGGGGGATATTTTTTGACGATCTTAATGATTATGATCA  Raphanus sativus cv Early Scarlet Globe
EV570533       <-- AGACGAGGACTTGGAGGGATATTTTTTGACGATCTTAATGACTATGATCA  Raphanus raphanistrum subsp. landra
EW738341       <-- AGAAGAGGACTTGGAGGGATATTTTTTGACGATCTTAATGATTATGATCA  Raphanus sativus cv Rat-Tail Radish #3870
EV570532       <-- AGACGAGGACTTGGAGGGATATTTTTTGACGATCTTAATGACTATGATCA  Raphanus raphanistrum subsp. landra
FD941634       --> ..................................................  Raphanus sativus var. oleiformis
EW723557       --> AGAa..............................................  Raphanus sativus cv Early Scarlet Globe
EV565214       --> AGACGAGGACTTGGAGGGATATTTTTTGACGATCTTAATGACTATGATCA  Raphanus raphanistrum subsp. landra
FD941493       --> AGACGAGGACTTGGAGGGATATTTTTTGACGATCTTAATGACTATGATCA  Raphanus sativus var. oleiformis
AB447922       --> ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger

               851    -    901
UN19133        --> GGAAATGCTTCTTGCATTCTCCACTGAATGTGCGAACTCAGTGGTACCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- GGAGATGCTTCTGGCTTTCTCCACTGAATGTGCGAACTCAGTGGTACCGG
EW728747       <-- GGAGATGCTTCTGGCTTTCTCCACTGAATGTGCGAACTCAGTGGTACCGG
EV570533       <-- GGAAATGCTTCTTGCATTCTCCACTGAATGTGCGAACTCAGTGGTACCGG
EW738341       <-- GGAGATGCTTCTTGCATTCTCCACTGAATGTGCGAACTCAGTGGTACCGG
EV570532       <-- GGAAATGCTTCTTGCATTCTCCACTGAATGTGCGAACTCAGTGGTACCGG
FD941634       --> ..................................................
EW723557       --> ..................................................
EV565214       --> GGAAATGCTTCTTGCATTCTCCACTGAATGTGCGAACTCAGTGGTACCGG
FD941493       --> GGAAATGCTTCTTGCATTCTCCACTGAATGTGCGAACTCAGTGGTACCGG
AB447922       --> .............................................ACCGG

               901    -    951
UN19133        --> CTTATATACCTATAGTAGAGAAGAGGAAAGACATGGAGTTTACAGAGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- CTTATATACCTATAGTAGAGAAGAGGAAAGACATGGAGTTTACAGAGCAG  Raphanus sativus var. oleiformis
EW728747       <-- CTTATATACCTATAGTAGAGAAGAGGAAAGACATGGAGTTTACAGAGCAG  Raphanus sativus cv Early Scarlet Globe
EV570533       <-- CTTATATACCTATATTAGAGAAGAGGAAAGACATGGAGTTTACAGAGCAG  Raphanus raphanistrum subsp. landra
EW738341       <-- CTTATATACCTATAGTAGAGAAGAGGAAAGACATGGAGTTTACAGAGCAG  Raphanus sativus cv Rat-Tail Radish #3870
EV570532       <-- CTTATATACCTATATTAGAGAAGAGGAAAGACATGGAGTTTACAGAGCAG  Raphanus raphanistrum subsp. landra
FD941634       --> ..................................................  Raphanus sativus var. oleiformis
EW723557       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV565214       --> CTTATATACCTATATTAGAGAAGAGGAAAGACATGGAGTTTACAGAGCAG  Raphanus raphanistrum subsp. landra
FD941493       --> CTTATATACCTATAGTAGAGAAGAGGAAAGACATGGAGTTTACAGAGCAG  Raphanus sativus var. oleiformis
AB447922       --> CTTATATACCTATAGTAGAGAAGAGGAAAGACATGGAGTTTACAGAGCAG  Raphanus sativus cv Sakurajima Daikon var. niger

               951    -   1001
UN19133        --> CACAAGGCATGGCAGCAGCTGCGGCGAGGAAGATATGTCGAATTCAACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- CACAAGGCATGGCAGCAGCTGCGGCGAGGAAGATATGTCGAATTCAACTT
EW728747       <-- CACAAGGCATGGCAGCAGCTGCGGCGAGGAAGATATGTCGAATTCAACTT
EV570533       <-- CACAAGGCATGGCAGCAGCTGCGGCGAGGAAGATATGTCGAATTCAACTT
EW738341       <-- CACAAGGCGTGGCAACAGTTGCGTAGAGGAAGATATGTCGAATTCAACTT
EV570532       <-- CACAAGGCATGGCAGCAGCTGCGGCGAGGAAGATATGTCGAATTCAACTT
FD941634       --> ..................................................
EW723557       --> ..................................................
EV565214       --> CACAAGGCATGGCAGCAGCTGCGGCGAGGAAGATATGTCGAATTCAACTT
FD941493       --> CACAAGGCATGGCAGCAGCTGCGGCGAGGAATATATGTCGAATTCAACTT
AB447922       --> CACAAGGCATGGCAGCAGCTGCGGCGAGGAAGATATGTCGAATTCAACTT

               1001   -   1051
UN19133        --> GGTATATGATCGTGGAACGACATTTGGTCTGAAGACAGGAGGGAGAATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- GGTATATAATCGTGGAACGACATTTGGTCTGAAGACAGGAGGGAGAATAG  Raphanus sativus var. oleiformis
EW728747       <-- GGTATATGATCGTGGAACGACATTTGGTCTGAAGACAGGAGGGAGAATAG  Raphanus sativus cv Early Scarlet Globe
EV570533       <-- GGTATATGATCGTGGAACGACATTTGGTCTGAAGACAGGAGGGAGAGTAG  Raphanus raphanistrum subsp. landra
EW738341       <-- GGTATATGATCGTGGAACGACATTTGGTCTGAAGACAGGAGGGAGAATTG  Raphanus sativus cv Rat-Tail Radish #3870
EV570532       <-- GGTATATGATCGTGGAACGACATTTGGTCTGAAGACAGGAGGGAGAGTAG  Raphanus raphanistrum subsp. landra
FD941634       --> ..................................................  Raphanus sativus var. oleiformis
EW723557       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV565214       --> GGTATATGATCGTGGAACGACATTTGGTCTGAAGACAGGAGGGAGAGTAG  Raphanus raphanistrum subsp. landra
FD941493       --> GGTATATGATCGTGGAACGACATTTGGTCTGAAGGCAGGAGGGAGAATAG  Raphanus sativus var. oleiformis
AB447922       --> GGTATATGATCGTGGAACGACATTTGGTCTGAAGACAGGAGGGAGAATAG  Raphanus sativus cv Sakurajima Daikon var. niger

               1051   -   1101
UN19133        --> AGAGTATTCTTGTCTCTCTTCCACTGTCAGCAAGATGGGAATATGACCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- AGAGTATTCTTGTCTCTCTTCCACTGTCAGCAAGATGGGAATATGACCAT
EW728747       <-- AGAGTATTCTTGTCTCTCTTCCACTGTCAGCAAGATGGGAATATGACCAT
EV570533       <-- AGAGTATTCTTGTCTCTCTTCCACTGTCAGCAAGATGGGAATATGACCAT
EW738341       <-- AGAGTATTCTTGTCTCTCTTCCACTGTCAGCAAGATGGGAATATGACCAT
EV570532       <-- AGAGTATTCTTGTCTTTCTTCCACTGTCAGCAAGATGGGAATATGACCAT
FD941634       --> ..................................................
EW723557       --> ..................................................
EV565214       --> AGAGTATTCTTGTCTCTCTTCCACTGTCAGCAAGATGGGAATATGACCAT
FD941493       --> AGAGTATTCTTGTCTCTCTTCCACTGTCAGCAAGATGGGAATATGACCAT
AB447922       --> AGAGTATTCTTGTCTCTCTTCCACTGTCAGCAAGATGGGAATATGACCAT

               1101   -   1151
UN19133        --> AAACCGGAAGAGGGGACGGAAGAGTGGAAGCTGTTGGATGCTTGTATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- AAACCGGAAGAGGGGACGGAAGAGTGGAAGCTGTTGGATGCTTGTATCAA
EW728747       <-- AAACCGGAAGAGGGGACGGAAGAGTGGAAGCTGTTGGATGCTTGTATCAA
EV570533       <-- AAACCGGAAGAGGGGACGGAAGAGTGGAAGCTGTTGGATGCTTGTATCAA
EW738341       <-- AAACCGGAAGAGGGGACCGAAGAGTGGAAGCTGTTGGATGCTTGTATCAA
EV570532       <-- AAACCGGAAGAGGGGACGGAAGAGTGGAAGCTGTTGGATGCTTGTATCAA
FD941634       --> ..................................................
EW723557       --> ..................................................
EV565214       --> AAACCGGAAGAGGGGACGGAAGAGTGGAAGCTGTTGGATGCTTGTATCAA
FD941493       --> AAACCGGAAGAGGGGACGGAAGAGTGGAAGCTGTTGGATGCTTGTATCAA
AB447922       --> AAACCGGAAGAGGGGACGGAAGAGTGGAAGCTGTTGGATGCTTGTATCAA

               1151   -   1201
UN19133        --> CCCCAAGGAGTGGATATAGCCCACGCTTT-CTGTTGAGACTGAGTT-GAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- CCCCAAGGAGTGGATATAGCCCACGCTTT-CTGTTGAGACTGAGTT-GAT
EW728747       <-- CCCCAAGGAGTGGATATAGCCCACGCTTT-CTGTTGAGACTGAGTT-GAT
EV570533       <-- CCCCAAGGAGTGGATATAGCCCACCCCTT-CTGTTGAGACTGAGTT-GAT
EW738341       <-- CCCCAAGGAGTGGATATAGCCCACGTTTTTCTGTTGAGACTGAGTTTGAT
EV570532       <-- CCCCAAGGAGTGGATATAGCCCACGCCTT-CTGTTGAGACTGAGTT-GAT
FD941634       --> ..................................................
EW723557       --> ..................................................
EV565214       --> CCCCAAGGAGTGGATATAGCCCACGCctt.....................
FD941493       --> CCCCAAGGAGTGGATATAGCCCACGTTTT-CTGTTGAGACTGAGTT-GAT
AB447922       --> CCCCAAGGAGTGGATATAGCCCACGCTTT-CTGTTGAGACTGAGTT-GAT

               1201   -   1251
UN19133        --> GTTGTTTCTATTGTTTCTTGTTTGTTTAGTTGGATT-AGATTATTCAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- GTTGTTTCTATTGTTTCTTGTTTGTTTAGTTGGATT-AGATTATTCAAGA
EW728747       <-- GTTGTTTCTATTGTTTCTTGTTTGTTTAGTTGGATT-AGATTATTCAAGA
EV570533       <-- GTTGTTTCTATTGTTTCTTGTTTGTTTAGTTGGATT-AGATTATTCAAGA
EW738341       <-- GTTGTTTCTATTGTTTCTTGTTTGTTTAGT-GGATTTAGATTATTCAAGA
EV570532       <-- GTTGTTTCTATTGTTTCTTGTTTGTTTAGTTGGATT-AGATTATTCAAGA
FD941634       --> ..................................................
EW723557       --> ..................................................
EV565214       --> ..................................................
FD941493       --> GTTGTTTCTATTGTTTCTTGTTTGTTTAGTTGGATT-AGATTATTCAAGA
AB447922       --> GTTGTTTCTATTGTTTCTTGTTTGTTTAGTTGGATT-AGATTATTCAAGA

               1251   -   1301
UN19133        --> GATGAAGGAAATGGATTTTGTAAGGTTGATGTGCATGTTGTTATAAAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- GATGAAGGAAATGGATTTTGTAAGGTTGATGTGCATGTTGTTATAAAAAC
EW728747       <-- GATGAAGGAAATGGATTTTGTAAGGTTGATGTGCATGTTGTTATAAAAAC
EV570533       <-- GATGAAGGAAATGGATTTTGTAAGGTTGATGTGCATGTTGTTATAAAAAC
EW738341       <-- GATGAAGGAAATGGATTTTGTAAGGT-GATGTGCATGTTGTTATAAAAAC
EV570532       <-- GATGAAGGAAATGGATTTTGTAAGGTTGATGTGCATGTTGTTAT......
FD941634       --> ..................................................
EW723557       --> ..................................................
EV565214       --> ..................................................
FD941493       --> GATGAAG-AAATGGATTTTG..............................
AB447922       --> GATGAAGGAAATGGATTTTGTAAGGTTGATGTGCATGTTGTTATAAAAAC

               1301   -   1351
UN19133        --> GCTGAGTGGCTACCAAGACAAACTTAGGTGATGTGCATGTTACCAATGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- GCTGAGTGGCTACCAAGACAAACTTAGGTGATGTGCATGTTACCAATGCT
EW728747       <-- GCTGAGTGGCTACCAAGAC...............................
EV570533       <-- GCTGAGTGGCTACCAAGACAAACTTAGGTGATGTGCATGTTACCAATGCT
EW738341       <-- GCTGAGTGGCTACC....................................
EV570532       <-- ..................................................
FD941634       --> ..................................................
EW723557       --> ..................................................
EV565214       --> ..................................................
FD941493       --> ..................................................
AB447922       --> GCTGAGTGGCTACCAAGAC...............................

               1351   -   1401
UN19133        --> GTATTTTCACAACTGACATGTTTATTGTCTACAGGCTCCCATCCAGTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD937235       <-- GTATTTTAACAACTGACATGTTTATTGTCTACAGGCTCCCATCCAGTTCA
EW728747       <-- ..................................................
EV570533       <-- GTATTTTCACAACTGACATGTTTATTATCTACAGGCTCCCATCCAGTcc.
EW738341       <-- ..................................................
EV570532       <-- ..................................................
FD941634       --> ..................................................
EW723557       --> ..................................................
EV565214       --> ..................................................
FD941493       --> ..................................................
AB447922       --> ..................................................

               1401   -   1451
UN19133        --> ACTCGTT
                   ~~~~~~~
FD937235       <-- ACTCGTT
EW728747       <-- .......
EV570533       <-- .......
EW738341       <-- .......
EV570532       <-- .......
FD941634       --> .......
EW723557       --> .......
EV565214       --> .......
FD941493       --> .......
AB447922       --> .......