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Alignment for radish unigene UN19303

               1      -     51
UN19303        --> GGGAACACATACAGATTTGTTTCCTTAAATTCTAGAAAATCAAAGACTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- ..................................................
FD959149       <-- ..................................................
EX774845       <-- ..................................................
EX775339       <-- ..................................................
FD959269       <-- ..................................................
FD534435       --> GGGAACACATACAGATTTGTTTCCTTAAATTCTAGAAAATCAAAGACTTT
FD962645       --> ..................................................
FD962797       --> ..................................................
EW715878       --> ..................................................
EV549046       --> ..................................................

               51     -    101
UN19303        --> CTCACATCGATGGATGATTAGAAACGACGACTCACGCATTTCGAAACGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- ..................................................
FD959149       <-- ..................................................
EX774845       <-- ..................................................
EX775339       <-- ..................................................
FD959269       <-- ..................................................
FD534435       --> CTCACATCGATGGATGATTAGAAACGACGACTCACGCATTTCGAAACGTT
FD962645       --> ...ggATCGATGGATGATTAGAAACGACGACTCACGCATTTCGAAACGTT
FD962797       --> ...ggATCGATGGATGATTAGAAACGACGACTCACGCATTTCGAAACGTT
EW715878       --> ...............GATTAGAAACGACGACTCACGCATTTCGAAACGTT
EV549046       --> ..................................................

               101    -    151
UN19303        --> TGGAGAAATTTCTCTTGAGAGACTAATCAGACCTTTCTCCTTCGTACTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- ..................................................
FD959149       <-- ..................................................
EX774845       <-- ..................................................
EX775339       <-- ..................................................
FD959269       <-- ..................................................
FD534435       --> TGGAGAAATTTCTCTTGAGAGACTAATCAGACCTTTCTCCTTCGTACTTG
FD962645       --> TGGAGAAATTTCTCTTGAGAGACTAATCAGACCTTTCTCCTTCGTACTTG
FD962797       --> TGGAGAAATTTCTCTTGAGAGACTAATCAGACCTTTCTCCTTCGTACTTG
EW715878       --> TGGAGAAATTTCTCTTGAGAGACTAATCAGACCTTTCTCCTTCGTACTTG
EV549046       --> .....................................TCCTTCGTACTTG

               151    -    201
UN19303        --> ACCAGTTTCGATGGCAGAGGGAAGCGCCGCTTCGCGTTACGTGAAATTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- ..................................................
FD959149       <-- ..................................................
EX774845       <-- ..................................................
EX775339       <-- ..................................................
FD959269       <-- ..................................................
FD534435       --> ACCAGTTTCGATGGCAGAGGGAAGCGCCGCTTCGCGTTACGTGAAATTGA
FD962645       --> ACCAGTTTCGATGGCAGAGGGAAGCGCCGCTTCGCGTTACGTGAAATTGA
FD962797       --> ACCAGTTTCGATGGCAGAGGGAAGCGCCGCTTCGCGTTACGTGAAATTGA
EW715878       --> ACCAGTTTCGATGGCAGAGGGAAGCGCCGCTTCGCGTTACGTGAAATTGA
EV549046       --> ACCAGTTTCGATGTCAGAGGGAAGCGCCGCTTCGCGTTACGTGAAATTGA

               201    -    251
UN19303        --> GGAAAGAGCAGGCTCCTGTGGAAGATATCACCCCCGGCGAACTCAACCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- ..................................................
FD959149       <-- ..................................................
EX774845       <-- ..................................................
EX775339       <-- ..................................................
FD959269       <-- ..................................................
FD534435       --> GGAAAGAGCAGGCTCCTGTGGAAGATATCACCCCCGGCGAACTCAACCAG
FD962645       --> GGAAAGAGCAGGCTCCTGTGGAAGATATCACCCCCGGCGAACTCAACCAG
FD962797       --> GGAAAGAGCAGGCTCCTGTGGAAGATATCACCCCCGGCGAACTCAACCAG
EW715878       --> GGAAAGAGCAGGCTCCTGTGGAAGATATCACCCCCGGCGAACTCAACCAG
EV549046       --> GGAAAGAGCAGGCTCCTGTGGAAGATATCACCCCCGGCGAACTCAACCAG

               251    -    301
UN19303        --> CCCATAGATGTTCCTCAGTTGAACGTTCGCAAGTGCCATGAATGTATGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- ..................................................
FD959149       <-- ..................................................
EX774845       <-- ..................................................
EX775339       <-- ..................................................
FD959269       <-- ..................................................
FD534435       --> CCCATTGATGTTCCTCAGTTGAACGTTCGCAAGTGCCATGAATGTATGCA
FD962645       --> CCCATAGATGTTCCTCAGTTGAACGTTCGCAAGTGCCATGAATGTATGCA
FD962797       --> CCCATAGATGTTCCTCAGTTGAACGTTCGCAAGTGCCATGAATGTATGCA
EW715878       --> CCCATTGATGTTCCTCAGTTGAACGTTCGCAAGTGCCATGAATGTATGCA
EV549046       --> CCCATAGATGTTCCTCAGTTGAACGTTCGCAAGTGCCATGAATGTATGCA

               301    -    351
UN19303        --> AGTTCTTCCTGAAACCTATGAACCTCCTTCTGATGAAAACTGGACCACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- .................................TGAAAACTGGACCACTG
FD959149       <-- .......................................CTGGACCACTG
EX774845       <-- ..................................................
EX775339       <-- ..................................................
FD959269       <-- ..................................................
FD534435       --> AGTTCTTCCTGAAACCTATGAACCTCCTTCTGATGAAAACTGGACCACTG
FD962645       --> AGTTCTTCCTGAAACCTATGAACCTCCTTCTGATGAAAACTGGACCACTG
FD962797       --> AGTTCTTCCTGAAACCTATGAACCTCCTTCTGATGAAAACTGGACCACTG
EW715878       --> AGTTCTTCCTGAAACCTATGAACCTCCTTCTGATGAAAACTGGACCACTG
EV549046       --> AGTTCTTCCTGAAACCTATGAACCTCCTTCTGATGAAAACTGGACCACTG

               351    -    401
UN19303        --> GCATCTTTGCTTGCGCTGAAGACCCCGACAGCTGCAGGACTGGTCTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- GCATCTTTGCTTGCGCTGAAGACCCCGACAGCTGCAGGACTGGTCTCTTT
FD959149       <-- GTATCTTTGCTTGCGCTGAAGACCCCGACAGCTGCAGGACTGGTCTCTTT
EX774845       <-- ..................................................
EX775339       <-- ..................................................
FD959269       <-- ..................................................
FD534435       --> GCATTTTCGCTTGCGCTGAAGACCCCGACAGCTGTAGGACTGGTCTCTTT
FD962645       --> GTATCTTTGCTTGCGCTGAAGACCCCGACAGCTGCAGGACTGGTCTCTTT
FD962797       --> GCATCTTTGCTTGCGCTGAAGACCCCGACAGCTGCAGGACTGGTCTCTTT
EW715878       --> GCATCTTTGCTTGCGCTGAAGACCCCGACAGCTGCAGGACTGGTCTCTTT
EV549046       --> GCATCTTTGCTTGCGCTGAAGACCCCGACAGCTGCAGGACTGGTCTCTTT

               401    -    451
UN19303        --> TGCCCCTGTGTACTCTATGGGCGTAACATCGAAGCTGTGAGGGAAGAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- TGCCCCTGTGTACTCTATGGGCGTAACATTGAAGCTGTGAGGGAAGAGAT
FD959149       <-- TGCCCCTGTGTACTCTATGGGCGTAACATCGAAGCTGTGAGGGAAGAGAT
EX774845       <-- ..................................................
EX775339       <-- ..................................................
FD959269       <-- ..................................................
FD534435       --> TGCCCCTGTGTACTCTATGGGCGTAACATCGAAGCCGTGAGGGAAGAGAT
FD962645       --> TGCCCCTGTGTACTCTATGGGCGTAACATCGAAGCTGTGAGGGAAGAGAT
FD962797       --> TGCCCCTGTGTACTCTATGGGCGTAACATCGAAGCTGTGAGGGAAGAGAT
EW715878       --> TGCCCCTGTGTACTCTATGGGCGTAACATTGAAGCTGTGAGGGAAGAGAT
EV549046       --> TGCCCCTGTGTACTCTATGGGCGTAACATCGAAGCTGTGAGGGAAGAGAT

               451    -    501
UN19303        --> TCCTTGGACTCAACCATGTGTGTGCCATGCTGTCTGTGTTGAGGGAGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- TCCTTGGACTCAACCATGTGTGTGCCATGCTGTCTGTGTTGAGGGAGGAA
FD959149       <-- TCCTTGGACTCAACCGTGTGTGTGCCATGCTGTCTGTGTTGAGGGAGGAA
EX774845       <-- ..................................................
EX775339       <-- ..................................................
FD959269       <-- ..................................................
FD534435       --> TCCCTGGACTCAACCATGTGTGTGCCATGCTGTCTGTGTTGAGGGAGGAA
FD962645       --> TCCTTGGACTCAACCGTGTGTGTGCCATGCTGTCTGTGTTGAGGGAGGAA
FD962797       --> TCCTTGGACTCAACCATGTGTGTGCCATGCTGTCTGTGTTGAGGGAGGAA
EW715878       --> TCCTTGGACTCAACCATGTGTGTGCCATGCTGTCTGTGTTGAGGGAGGAA
EV549046       --> TCCTTGGACTCAACCATGTGTGTGCCATGCTGTCTGTGTTGAGGGAGGAA

               501    -    551
UN19303        --> TGGCACTTGCAGCCGTAACCGCACTGTTTAGTGGCTACATTGATCCTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- TGGCACTTGCAGCCGTAACCGCATTGTTTAGTGGCTACATTGATCCTCAA
FD959149       <-- TGGCACTTGCAGCCGTAACCGCACTGTTTAGTGGCTACATTGATCCTCAA
EX774845       <-- ..................................................
EX775339       <-- ..................................................
FD959269       <-- ..................................................
FD534435       --> TGGCACTTGCAGCCGTAACCGCACTGTTTAGTGGCTACATTGATCCTCAA
FD962645       --> TGGCACTTGCAGCCGTAACCGCACTGTTTAGTGGCTACATTGATCCTCAA
FD962797       --> TGGCACTTGCAGCCGTAACCGCACTGTTTAGTGGCTACATTGATCCTCAA
EW715878       --> TGGCACTTGCAGCCGTAACCGCATTGTTTAGTGGCTACATTGATCCTCAA
EV549046       --> TGGCACTTGCAGCCGTAACCGCACTGTTTAGTGGCTACATTGATCCTCAA

               551    -    601
UN19303        --> ACAACAGTCGTCATATGCGAAGGCCTCTTCTTTGCGTGGTGGATGTGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- ACAACAGTCGTCATATGCGAAGGCCTCTTCTTTGCGTGGTGGATGTGTGG
FD959149       <-- ACAACAGTCGTCATATGCGAAGGCCTCTTCTTTGCGTGGTGGATGTGTGG
EX774845       <-- ....................AGGCCTTTTCTTTGCGTGGTGGATGTGTGG
EX775339       <-- ...........................TTCTTTGCGTGGTGGATGTGTGG
FD959269       <-- ..................................................
FD534435       --> ACAACAGTCGTCATATGCGAAGGCCTCTTCTTTGCGTGGTGGATGTGTGG
FD962645       --> ACAACAGTCGTCATATGCGAAGGCCTCTTCTTTGCGTGGTGGATGTGTGG
FD962797       --> ACAACAGTCGTCATATGCGAAGGCCTCTTCTTTGCGTGGTGGATGTGTGG
EW715878       --> ACAACAGTCGTCATATGCGAAGGCCTCTTCTTTGCGTGGTGGATGTGTGG
EV549046       --> ACAACAGTCGTCATATGCGAAGGCCTCTTCTTTGCGTGGTGGATGTGTGG

               601    -    651
UN19303        --> AATCTACTCTGGCTTGTTCCGCCAAGAACTCCAGAAGAAGTATCATCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- AATCTACTCTGGCTTGTTCCGCCAAGAACTCCAGAAGAAGTATCATCTCA
FD959149       <-- AATCTACTCTGGCTTGTTCCGCCAAGAACTCCAGAAGAAGTATCATCTCA
EX774845       <-- AATCTATTCAGGCTTGTTCCGCCAAGAACTCCAGAAGAAGTATCATCTCA
EX775339       <-- AATCTACTCAGGCTTGTTCCGCCAAGAACTCCAGAAGAAGTATCATTTCA
FD959269       <-- .......TCTGGCTTGTTCCGCCAAGAACTCCAGAAGAAGTATCATCTCA
FD534435       --> AATCTACTCTGGCTTGTT................................
FD962645       --> AATCTACTCTGGCTTGTTCCGCCAAGAACTCCAGAAGAAGTATCATCTCA
FD962797       --> AATCTACTCTGGCTTGTTCCGC............................
EW715878       --> AATCTACTCTGGCTTGTTCCGCCAAGAACTCCAGAAGAAGTATCATCTCA
EV549046       --> AATCTACTCTGGCTTGTTCCGCCAAGAACTCCAGAAGAAGTATCATCTCA

               651    -    701
UN19303        --> AGAATGCGCCGTGTGATCACTGCATGGTTCACTGCTGCTTGCATTGGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- AGAATGCGCCGTGTGATCACTGCATGGTTCACTGCTGCTTGTATTGGTGC
FD959149       <-- AGAATGCGCCGTGTGATCACTTCATGGTTCACTGCTGCTTGCATTGGTGC
EX774845       <-- AGAATGCGCCGTGTGATCACTGCATGGTTCACTGCTGCTTGCATTGGTGC
EX775339       <-- AGAATGCGCCGTGTGATCACTGCATGGTTCACTGCTGCTTGCATTGGTGC
FD959269       <-- AGAATGCGCCGTGTGATCACTGCATGGTTCACTGCTGCTTGCATTGGTGC
FD534435       --> ..................................................
FD962645       --> AGAATGCGCCGTGTGATCACTTCATGGTTCACTGCTGCTTGCATTGGTGC
FD962797       --> ..................................................
EW715878       --> AGAATGCGCCGTGTGATCACTGCATGGTTCACTGCTGCTTGTATTGGTGC
EV549046       --> AGAATGCGCCGTGTGATCACTGCATGGTTCACTGCTGCTTGCATTGGTGC

               701    -    751
UN19303        --> GCTCTGTGTCAAGAACACAGGGAGATGAGGAATCATCTCTCTGATGCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- GCTCTGTGTCAAGAACACAGGGAGATGAGGAATCATCTCTCTGATGCAGA  Raphanus sativus var. oleiformis
FD959149       <-- GCTCTGTGTCAAGAACACAGGGAGATGAGGAATCATCTCTCTGATGCAGA  Raphanus raphanistrum subsp. maritimus
EX774845       <-- GCTCTGTGTCAAGAACACAGGGAGATGAGGAATCATCTTTCTGATGCAGA  Raphanus raphanistrum subsp. landra
EX775339       <-- GCTCTGTGTCAAGAACACAGGGAGATGAGGAATCATCTTTTTGATGCAGA  Raphanus raphanistrum subsp. landra
FD959269       <-- GCTCTGTGTCAAGAACACAGGGAGATGAGGAATCATCTTTCTGATGCAGA  Raphanus raphanistrum subsp. maritimus
FD534435       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD962645       --> GCTCTGTGTCAAGAACACAGGGAGATGAGGA-TCATCTCTCTGATGCAGA  Raphanus raphanistrum subsp. maritimus
FD962797       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW715878       --> GCTCTGTGTCAAGAACACAGGGAGATGAGGAATCATCTCTCTGATGCAGA  Raphanus sativus var. oleiformis
EV549046       --> GCTCTGTGTCAAGAACACAGGGAGATGAGGAATCATCTCTCTGATGCAGA  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN19303        --> TGCTTCGTCTTCAACTACTATGGATCCTCCTCCAGTTCAAGCAATGAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- TGCTTCGTCTTCAACTACTATGGATCCTCCTCCAGTTCAAGCAATGAACA
FD959149       <-- TGCTTCGTCTTCAACTACTATGGATCCTCCTCCAGTTCAAGCAATGAACA
EX774845       <-- TGCTTCGTCTTCAACTACTATGGATCCTCCTCCAGTTCAAGCAATGAACA
EX775339       <-- TGCTTCGTCTTCAACTACTATGGATCCTCCTCCAGTTCAAGCAATGAACA
FD959269       <-- TGCTTCGTCTTCAACTACTATGGATCCTCCTCCAGTTCAAGCAATGAACA
FD534435       --> ..................................................
FD962645       --> TGCTTCGTCTTCA-CTACTATGGATCCTCCTC-AGTTCA-GCA-TGAACA
FD962797       --> ..................................................
EW715878       --> TGCTTCGTCTTCAACTACTATGGATCCTCCTCCAGTTC............
EV549046       --> TGCTTCGTCTTCAACTACTATGGATCCTCCTCCCGTTCAAGCAATGAA..

               801    -    851
UN19303        --> CCGAAGGGAACAAAGACGCTTCATCTTCTTTTTCGTCATCATCGTCTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- CCGAAGGGAACAAAGACGCTTCATCTTCTTCTTCGTCATCATCGTCTCCA
FD959149       <-- CCGAAGGGAACAAAGACGCTTCATCTTCTTCTTCGTTATCATCGTCTCCA
EX774845       <-- CCGAAGGGAACAAAGACGCTTCATTTTTTTTTTCGTCATCATCGTCTCCA
EX775339       <-- CCGAAGGGAACAAAGACGCTTCATTTTTTTTTTCGTCAT...........
FD959269       <-- CCGAAGGGAACAAAGACGCTTCATCTTCTTTTTCGTCATCATCGTCTCCA
FD534435       --> ..................................................
FD962645       --> CCGAAGG--ACAA-GACGCTTCATCT-CTCT--CGT-ATCATCGTCTC-A
FD962797       --> ..................................................
EW715878       --> ..................................................
EV549046       --> ..................................................

               851    -    901
UN19303        --> TCATCTGCCAAAAGCCAACACAATGATCTCGAGATGGTCCCTCTTTAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- TCATCTGCCAAAAGCCAACACAATGATCTCGAGATGGTCCCTCTTTAGAA
FD959149       <-- TCATCTGCCAAAAGCCAACACAATGATCTCGAGATGGTCCCTCTTTAGAA
EX774845       <-- TCATCTGCCAAAAGCCAACACAATGATCTCGAGATGGTCCCTCTTTAGAA
EX775339       <-- ..................................................
FD959269       <-- TCATCTGCCAAAAGCCAACACAATGATCTCGAGATGGTCCCTCTTTAGAA
FD534435       --> ..................................................
FD962645       --> TCATCT............................................
FD962797       --> ..................................................
EW715878       --> ..................................................
EV549046       --> ..................................................

               901    -    951
UN19303        --> AACATTCCTTGTCATTTTTGCTACGTAGCTGTCAACGTTTTTGTGCAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- AACATTCCTTGTCATCTCTGCTACGTAGCTGTCAACGTTTTTGTGCAGAG
FD959149       <-- AACATTCCTTGTCATCTCTGCTACGTAGCTGTCAACGTTTTTGTGCAGAG
EX774845       <-- AACATTCCTTGTCATTTTTGCTACGTAGCTGTCAACGTTTTTGTGCAGAG
EX775339       <-- ..................................................
FD959269       <-- AACATTCCTTGTCGTTTTTGCTACGTAGCTGTCAACGTTTTTGTGCAGAG
FD534435       --> ..................................................
FD962645       --> ..................................................
FD962797       --> ..................................................
EW715878       --> ..................................................
EV549046       --> ..................................................

               951    -   1001
UN19303        --> AAGTTTTCTTACCAGCTGATTATGTTGGTTTTACAGATTCAAGTTTGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- AAGTTTTCTTACCGGCTGATTATGTTGGTTTTACAGATTCAAGTTTGTCC
FD959149       <-- AAGTTTTCTTACCAGCTGATTATGTTGGTTTTACAGATTCAAGTTTGTCC
EX774845       <-- AAGTTTTCTTACCAGCTGATTATGTTGGTTTTACAGATTCAAGTTTGTCC
EX775339       <-- ..................................................
FD959269       <-- AAGTTTTCTTACCAGCTGATTATGTTGGTTTTACAGATTCAAGTTTGTCC
FD534435       --> ..................................................
FD962645       --> ..................................................
FD962797       --> ..................................................
EW715878       --> ..................................................
EV549046       --> ..................................................

               1001   -   1051
UN19303        --> TAAGAACAAGTTCATTAGTATTTTTTTTACCTTTTACTGAACTTAACGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- TAAGAACAAGTTCATTAGTATTTTTTTTACCTTTTACTGAACTTAACGTT
FD959149       <-- TAAGAACAAGTTCATTAGTATTTTTTTTACCTTTTACTGAACTTAACGTT
EX774845       <-- TAAGAACAAGTTCATTAGTATTTTTTTTACCTTTTACTGAACTTAACGTC
EX775339       <-- ..................................................
FD959269       <-- TAAGAACAAGTTCATTAGTATTTTTTT-ACCTTTT...............
FD534435       --> ..................................................
FD962645       --> ..................................................
FD962797       --> ..................................................
EW715878       --> ..................................................
EV549046       --> ..................................................

               1051   -   1101
UN19303        --> TGAGGTCATTGAATGTCTTTGGATATGGAAGTAAATTATTTATTTTAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720370       <-- TGAGGTCATTGAATGTCTTTGGATATGGAAGTAAATTATTTATTTTAGTT
FD959149       <-- TGAGGTCATTGAATGTCTTTGGATATGGAAGTAAATTATTTATTTTAGTT
EX774845       <-- TGAGGTCATTGAATGTCTTTGGATATGGAAGTAAATTATTTATTTTAGcc
EX775339       <-- ..................................................
FD959269       <-- ..................................................
FD534435       --> ..................................................
FD962645       --> ..................................................
FD962797       --> ..................................................
EW715878       --> ..................................................
EV549046       --> ..................................................

               1101   -   1151
UN19303        --> ATCGTTATGAACT
                   ~~~~~~~~~~~~~
EW720370       <-- ATCGTTATGAACT
FD959149       <-- ATCGTT.......
EX774845       <-- .............
EX775339       <-- .............
FD959269       <-- .............
FD534435       --> .............
FD962645       --> .............
FD962797       --> .............
EW715878       --> .............
EV549046       --> .............