1      -     51
UN19307        --> GGGAGCTTGGGCGAGAGAGAGAGA-AGAAGCCATGGTTAAGTTCCTAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY895596       <-- GGGAGCTTGGGCGAGAGAGAGAGAGAGAAGCCATGGTTAAGTTCCTAAAG
FD555345       <-- .....gggGGGGGAGAGAGAGAGA-AGAAGCCATGGTTAAGTTCCTAAAG
FD936683       <-- .....ggggtgtGAGAGAGAGAGA-AGAAGCCATGGTTAAGTTCCTAAAG
FD961465       <-- ..................................................
EY899929       --> GGGAGCTTGGGCGAGAGAGAGAGAGAGAAGCCATGGTTAAGTTCCTAAAG
FD559681       --> .....gggGGGGGAGAGAGAGAGA-AGAAGCCATGGTTAAGTTCCTAAAG
FD940919       --> .....ggggtgtGAGAGAGAGAGA-AGAAGCCATGGTTAAGTTCCTAAAG
FD964976       --> ..gggagggagcttggGAGAGAG--AGAAGCCATGGTTAAGTTCCTAAAG
FD965839       --> ..................................................
EX762970       --> ..................................................

               51     -    101
UN19307        --> CAGAACAAAGCGGTGATCCTCCTCCAAGGCCGTTACGCCGGCAAGAAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY895596       <-- CAGAACAAAGCGGTGATCCTCCTCCAAGACCGTTACGCCGGCAAGAAGGC
FD555345       <-- CAGAACAAAGCGGTGATCCTCCTCCAAGGCCGTTACGCCGGCAAGAAGGC
FD936683       <-- CAGAACAAAGCGGTGATCCTCCTCCAAGGCCGTTACGCCGGCAAGAAGGC
FD961465       <-- ..................................................
EY899929       --> CAGAACAAAGCGGTGATCCTCCTCCAAGACCGTTACGCCGGCAAGAAGGC
FD559681       --> CAGAACAAAGCGGTGATCCTCCTCCAAGGCCGTTACGCCGGCAAGAAGGC
FD940919       --> CAGAACAAAGCGGTGATCCTCCTCCAAGGCCGTTACGCCGGCAAGAAGGC
FD964976       --> CAGAACAAAGCGGTGATCCTCCTCCAAGGCCGTTACGCTGGCAAGAAGGC
FD965839       --> ..................................................
EX762970       --> ..................................................

               101    -    151
UN19307        --> GGTGATCATCCGCTCCTTCGACGACGGTAACCGCGAGCGACCATACGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY895596       <-- GGTGATCATCCGCTCCTTCGACGACGGTAACCGCGAGCGACCTTACGGAC
FD555345       <-- GGTGATCATCCGGTCCTTCGACGACGGGAACCGCGAGCGACCATACGGAC
FD936683       <-- GGTGATCATCCGCTCCTTCGACGACGGAAACCGCGAGCGACCATACGGAC
FD961465       <-- ..................................................
EY899929       --> GGTGATCATCCGCTCCTTCGACGACGGTAACCGCGAGCGACCTTACGGAC
FD559681       --> GGTGATCATCCGGTCCTTCGACGACGGGAACCGCGAGCGACCATACGGAC
FD940919       --> GGTGATCATCCGCTCCTTCGACGACGGAAACCGCGAGCGACCATACGGAC
FD964976       --> TGTGATCATCCGCTCCTTCGACGACGGTAACCGCGAGCGTCCATACGGAC
FD965839       --> ..................................................
EX762970       --> ..................................................

               151    -    201
UN19307        --> ACTGCCTCGTCGCGGGACTGAAGAAGTACCCGAGCAAGGTGATCCGCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY895596       <-- ACTGCCTCGTCGCGGGACTGAAGAAGTACCCGAGCAAGGTGATCCGCAAG  Raphanus raphanistrum subsp. maritimus
FD555345       <-- ACTGCCTCGTCGCGGGACTGAAGAAGTACCCGAGCAAGGTGATCCGCAAG  Raphanus raphanistrum subsp. landra
FD936683       <-- ACTGCCTCGTCGCAGGACTCAAGAAGTACCCGAGCAAGGTCATCCGCAAG  Raphanus sativus var. oleiformis
FD961465       <-- ..........................................TCCGCAAG  Raphanus raphanistrum subsp. maritimus
EY899929       --> ACTGCCTCGTCGCGGGACTGAAGAAGTACCCGAGCAAGGTGATCCGCAAG  Raphanus raphanistrum subsp. maritimus
FD559681       --> ACTGCCTCGTCGCGGGACTGAAGAAGTACCCGAGCAAGGTGATCCGCAAG  Raphanus raphanistrum subsp. landra
FD940919       --> ACTGCCTCGTCGCAGGACTCAAGAAGTACCCGAGCAAGGTCATCCGCAAG  Raphanus sativus var. oleiformis
FD964976       --> ACTGCCTCGTCGCGGGACTCAAGAAGTACCCGAGCAAGGTGATCCGCAAG  Raphanus raphanistrum subsp. maritimus
FD965839       --> ........................gGTACCCGAGCAAGGTGATCCGCAAG  Raphanus raphanistrum subsp. maritimus
EX762970       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               201    -    251
UN19307        --> GACTCGGCCAAGAAGACGGCGAAGAAGTCGAGGGTCAAGTGCTTCATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY895596       <-- GACTCGGCCAAGAAGACGGCGAAGAAGTCGAGGGTCAAGTGCTTCATCAA
FD555345       <-- GACTCGGCCAAGAAGACGACGAAGAAGTCGAGGGTCAAGTGCTTCATCAA
FD936683       <-- GACTCAGCCAAGAAGACGGCGAAGAAGTCGAGGGTCAAGTGCTTCATCAA
FD961465       <-- GACTCGGCCAAGAAGACGGCGAAGAAGTCGAGGGTCAAGTGTTTCATCAA
EY899929       --> GACTCGGCCAAGAAGACGGCGAAGAAGTCGAGGGTCAAGTGCTTCATCAA
FD559681       --> GACTCGGCCAAGAAGACGACGAAGAAGTCGAGGGTCAAGTGCTTCATCAA
FD940919       --> GACTCAGCCAAGAAGACGGCGAAGAAGTCGAGGGTCAAGTGCTTCATCAA
FD964976       --> GACTCGGCCAAGAAGACGGCGAAGAAGTCGAGGGTCAAGTGTTTCATCAA
FD965839       --> GACTCGGCCAAGAAGACGGCGAAGAAGTCGAGGGTCAAGTGTTTCATCAA
EX762970       --> ..................................................

               251    -    301
UN19307        --> GGTCGTGAACTACCAGCATCTGATGCCTACTCGTTACACGCTCGACGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY895596       <-- GGTCGTGAACTACCAGCTTCTGATGCCTACTCGTTACACGCTCGACGTGG
FD555345       <-- GGTCGTGAACTACCAGCATCTTATGCCTACTCGTTACACGCTCGACGTGG
FD936683       <-- GGTCGTGAACTACCAGCATCTGATGCCTACTCGTTACACGCTCGACGTGG
FD961465       <-- GGTCGTGAACTACCAGCATCTGATGCCTACTCGTTACACGCTCGACGTGG
EY899929       --> GGTCGTGAACTACCAGCTTCTGATGCCTACTCGTTACACGCTCGACGTGG
FD559681       --> GGTCGTGAACTACCAGCATCTTATGCCTACTCGTTACACGCTCGACGTGG
FD940919       --> GGTCGTGAACTACCAGCATCTGATGCCTACTCGTTACACGCTCGACGTGG
FD964976       --> GGTCGTGAACTACCAGCATCTGATGCCTACTCGTTACACGCTCGACGTGG
FD965839       --> GGTCGTGAACTACCAGCATCTGATGCCTACTCGTTACACGCTCGACGTGG
EX762970       --> ..................................................

               301    -    351
UN19307        --> ATCTGAAGGAGGTGGCGACTCTCGAAGCTCTGTCTTCGAAGGATAAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY895596       <-- ATCTGAAGGAGGTGGCGACATTGGAAGCTCTGTCTTCGAAGGATAAGAAG  Raphanus raphanistrum subsp. maritimus
FD555345       <-- ATCTGAAGGAGGTGGCGACACTCGAGGCTCTGTCTTCGAAGGATAAGAAG  Raphanus raphanistrum subsp. landra
FD936683       <-- ATCTGAAGGAGGTGGCGACTCTCGAAGCTCTGTCTTCGAAGGATAAGAAG  Raphanus sativus var. oleiformis
FD961465       <-- ATCTGAAGGAGGTGGCGACTCTCGAAGCTCTGGCTTCGAAGGATAAGAAG  Raphanus raphanistrum subsp. maritimus
EY899929       --> ATCTGAAGGAGGTG....................................  Raphanus raphanistrum subsp. maritimus
FD559681       --> ATCTGAAGGAGGTGGCGACACTCGAGGCTCTGTCTTCGAAGGATAAGAAG  Raphanus raphanistrum subsp. landra
FD940919       --> ATCTGAAGGAGGTGGCGACTCTCGAAGCTCTGTCTTCGAAGGATAAGAAG  Raphanus sativus var. oleiformis
FD964976       --> ATCTGAAGGAGGTGGCGACTCTCGAAGCTCTGGCTTCGAAGGATAAGAAG  Raphanus raphanistrum subsp. maritimus
FD965839       --> ATCTGAAGGAGGTGGCGACTCTCGAAGCTCTGGCTTCGAAGGATAAGAAG  Raphanus raphanistrum subsp. maritimus
EX762970       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               351    -    401
UN19307        --> GTGGCGGCTCTTAAGGAGGCCAAGGCTAAGCTCGAGGAGAGGTTCAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY895596       <-- GTGGCGGCTCTTAAGGAGGCCAAGGCTAAGCTCGAGGAGAGGTTCAAGAC
FD555345       <-- GTGGCGGCTCTTAAGGAGGCCAAGGCTAAGCTCGAGGAGAGGTTCAAGAC
FD936683       <-- GTGGCGGCTCTTAAGGAGGCCAAGGCTAAGCTCGAGGAGAGGTTCAAGAC
FD961465       <-- GTGGCGGCTCTTAAGGAGGCCAAGGCTAAGCTCGAGGAGAGGTTCAAGAC
EY899929       --> ..................................................
FD559681       --> GTGGCGGCTCTTAAGGAGGCCAAGGCTAAGCTCGAGGAGAGGTTCAAGAC
FD940919       --> GTGGCGGCTCTTAAGGAGGCCAAGGCTAAGCTCGAGGAGAGGTTCAAGAC
FD964976       --> GTGGCGGCTCTTAAGGAGGCCAAGGCTAAGCTCGAGGAGAGGTTCAAGAC
FD965839       --> GTGGCGGCTCTTAAGGAGGCCAAGGCTAAGCTCGAGGAGAGGTTCAAGAC
EX762970       --> ..................................................

               401    -    451
UN19307        --> TGGGAAGAACAGGTGGTTCTTCACCAAGCTCAGGTTTTGAGAAAGTTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY895596       <-- TGGGAAGAACAGGTGGTTCTTCACCAAGCTCAGGTTTTGAGAAAGTTTTA
FD555345       <-- TGGGAAGAACAGGTGGTTCTTCACCAAGCTCAGGTTTTGAGAAAGTTTTA
FD936683       <-- TGGGAAGAACAGGTGGTTCTTCACCAAGCTCAGGTTTTGAGAAAGTTTTA
FD961465       <-- TGGGAAGAACAGGTGGTTCTTCACCAAGCTCAGGTTTTGAGAAAGTTTTA
EY899929       --> ..................................................
FD559681       --> TGGGAAGAACAGGTGGTTCTTCACCAAGCTCAGGTTTTGAGAAAGTTTTA
FD940919       --> TGGGAAGAACAGGTGGTTCTTCACCAAGCTCAGGTTTTGAGAAAGTTTTA
FD964976       --> TGGGAAGAACAGGTGGTTCTTCACCAAGCTCAGGTTTTGAGAAAGTTTTA
FD965839       --> TGGGAAGAACAGGTGGTTCTTCACCAAGCTCAGGTTTTGAGAAAGTTTTA
EX762970       --> gGGGAAGAACAGATGGTTCTTCACCAAGCTCAGGTTTTGAGAAAGTTTTA

               451    -    501
UN19307        --> TCGTTTTTGTAACGGAATCTACAGTATGCTTTTTGTAGTTT-GTCGGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY895596       <-- TCGTTTTTGTAACGGAATCTACAGTATGCTTTTTGTAGTTT-GTCGGAAC
FD555345       <-- TCGTTTTTGTAACGGAATCTACAGTATGCTTTTTGTAGTTT-GTCGGAAC
FD936683       <-- TCGTTTTTGTAACGGAATCTACAGTATGCTTTTTGTAGTTTTGTCGGAAC
FD961465       <-- TCGTTTTTGTAACGGAATCTACAGTATGCTTTTTGTAGTTT-GTCGGAAC
EY899929       --> ..................................................
FD559681       --> TCGTTTTTGTAACGGAATCTACAGTATGCTTTTTGTAGTTT-GTCGGAAC
FD940919       --> TCGTTTTTGTAACGGAATCTACAGTATGCTTTTTGTAGTTTTGTCGGAAC
FD964976       --> TCGTTTTTGTAACGGAATCTACAGTATGCTTTTTGTAGTTT-GTCGGAAC
FD965839       --> TCGTTTTTGTAACGGAATCTACAGTATGCTTTTTGTAGTTT-GTCGGAAC
EX762970       --> TCGTTTTTGTAACGGAATCTACAGTATGCTTTTTGTAGTTT-GTCGGAAC

               501    -    551
UN19307        --> ATGTTTTGGATGGTTTAAGACTTATGGTTTGATATTTGATTCTTGGAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY895596       <-- ATGTTTTGGATGGTTTAAGACTTATGGTTTGATATTTGATTCTTGGAATT
FD555345       <-- ATGTTTTGGATGGTTTAAGACTTATGGTTTGATATTTGATTCTTGGAATT
FD936683       <-- ATGTTTTGGATGGTTTAAGACTTATGGTTTGATATTTGATTCTTGGAATT
FD961465       <-- ATGTTTTGGATGGTTTAAGACTTATGGTTTGATATTTGATTCTTGGAATT
EY899929       --> ..................................................
FD559681       --> ATGTTTTGGATGGTTTAAGACTTATGGTTTGATATTTGATTCTTGGAATT
FD940919       --> ATGTTTTGGATGGTTTAAGACTTATGGTTTGATATTTGATTCTTGGAATT
FD964976       --> ATGTTTTGGATGGTTTAAGACTTATGGTTTGATATTTGATTCTTGGAATT
FD965839       --> ATGTTTTGGATGGTTTAAGACTTATGGTTTGATATTTGATTCTTGGAATT
EX762970       --> ATGTTTTGGATGGTTTAAGACTTATGGTTTGATATTTGATTCTTGGAATT

               551    -    601
UN19307        --> TTTGTTCTTTTATTACGATCATTTGCTATGTTGGTGCTTTAGTTAATATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY895596       <-- TTTGTTCTTTTATTACGATCATTTGCTATGTTGGTGCCTTAGTTAATATA
FD555345       <-- TTTGTTCTTTTATTACGATCATTTGCTATGTT..................
FD936683       <-- TTTGTTC...........................................
FD961465       <-- TTTGTTCTTTTATTACGATCATTTGC........................
EY899929       --> ..................................................
FD559681       --> TTTGTTCTTTTATTACGATCATTTGCTATGTT..................
FD940919       --> TTTGTTC...........................................
FD964976       --> TTTGTTCaaaa.......................................
FD965839       --> TTTGTTCTTTTATTACGATCATTTGC........................
EX762970       --> TTTGTTCTTTTATTACGATCATTTGCTATGTTGGTGCTTTAGTTAATATA

               601    -    651
UN19307        --> TCTTCACTGGTTTAGT
                   ~~~~~~~~~~~~~~~~
EY895596       <-- TCTTCACTGGTTTAGc
FD555345       <-- ................
FD936683       <-- ................
FD961465       <-- ................
EY899929       --> ................
FD559681       --> ................
FD940919       --> ................
FD964976       --> ................
FD965839       --> ................
EX762970       --> TCTTCACTGGTTTAGT