1      -     51
UN19335        --> AAAAGACAACCAAAATTGATATAGATAGAACACTTGAAACAAAAACAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- ..................................................
EV536990       <-- ..................................................
FD970069       <-- ..................................................
FD532922       <-- ..................................................
EY896945       <-- ..................................................
EY906526       <-- ..................................................
EY908170       <-- ..................................................
EY893374       --> AAAAGACAACCAAAATTGATATAGATAGAACACTTGAAACAAAAACAAGA
FD966517       --> .....atAACCAAAATTGATATAGATACAACACTTGAAACAAAAACAAGA
EV541322       --> ........................................AAAAACAAGA
EV531657       --> ..................................................

               51     -    101
UN19335        --> AACGTCTCGAGAACTGAAGCCACTATTGTGGAGTAATGTAATCACCAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- ..................................................
EV536990       <-- ..................................................
FD970069       <-- ..................................................
FD532922       <-- ..................................................
EY896945       <-- ..................................................
EY906526       <-- ..................................................
EY908170       <-- ..................................................
EY893374       --> AACGTCTCGAGAACTGAAGCCACTATTGTGGAGTAATGTAATCACCAGGA
FD966517       --> AACGTCTCGAGAACTGAAGCCACTATTGTGGAGTAATGTAATCACCAGGA
EV541322       --> AACGTCTCGAGAACTGAAGCCACTATTGTGGAGTAATGTAATCACCAGGA
EV531657       --> ..CGTCTCGAGAACTGAAGCCACTATTGTGGAGTAATGTAATCACCAGGA

               101    -    151
UN19335        --> ATGAGTTTATACTGCAAATGATGCTGGAACGCAGCTTAAGCCTGGTTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- ..................................................
EV536990       <-- ..................................................
FD970069       <-- ..................................................
FD532922       <-- ..................................................
EY896945       <-- ..................................................
EY906526       <-- ..................................................
EY908170       <-- ..................................................
EY893374       --> ATGAGTTTATACTGCAAATGATGCTGGAACGCAGCTTAAGCCTGGTTAAA
FD966517       --> ATGAGTTTATACTGCAAATGATGCTGGAACGCAGCTTAAGCCTGGTTAAA
EV541322       --> ATGAGTTTATACTGCAAATGATGCTGGAACGCAGCTTAAGCCTGGTTAAA
EV531657       --> ATGAGTTTATACTGCAAATGATGCTGGAACGCAGCTTAAGCCTGGTTAAA

               151    -    201
UN19335        --> AGAAACACAAGTATATATGATAGTTAAAGGTCTGAGAGGGTTTTGCCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- AGAAACACAAGTAGATATGATAGT-AAAGGTCTGAGAGGGTTT-GCCATT  Raphanus raphanistrum subsp. maritimus
EV536990       <-- ........AAGTATATATGATAGT-AAAGGTC-GAGAGGGTTT-GCCAT-  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970069       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD532922       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY896945       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY906526       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908170       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY893374       --> AGAAACACAAGTAGATATGATAGTTAAAGGTCTGAAAGGGTTTTGCCGTT  Raphanus raphanistrum subsp. maritimus
FD966517       --> AGAAACACAAGTATATATGATAGTTAAAGGTCTGAAAGGGTTTTGCCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541322       --> AGAAACACAAGTATATATGATAGTTAAAGGTCGGAGAGGGTTTTGCCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531657       --> AGAAACACAAGTAGATATGATAGTTAAAGGTCTGAGAGGGTTTTGCCATT  Raphanus raphanistrum subsp. maritimus

               201    -    251
UN19335        --> GATGAAGCTAATGACATTAGTGGCAGTTTCCTCTAGCGCAGAGGTGACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- GATGAAGCTAATGACATTAGTGGCAGTT-CCTCTAGCGCAGAGGTCACAA  Raphanus raphanistrum subsp. maritimus
EV536990       <-- GATGAAGCTAATGACATTAGTGGCAGTTTCCTCTAGCGCAGAGGTGACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970069       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD532922       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY896945       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY906526       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908170       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY893374       --> GATGAAGCTAATGACATTAGTGGCAGTTTCCTCTAGCGCAAAGGTCACAA  Raphanus raphanistrum subsp. maritimus
FD966517       --> GATGAAGCTAATGACATTAGTGGCAGTTTCCTCTAGCGCAAAGGTGACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541322       --> GATGAAGCTAATGACATTAGTGGCAGTTTCCTCTAGCGCAGAGGTGACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531657       --> GATGAAGCTAATGACATTAGTGGCAGTTTCCTCTAGCGCAGAGGTCACAA  Raphanus raphanistrum subsp. maritimus

               251    -    301
UN19335        --> GTGCCAAGTTCTTCAAGAATTCTTCTGCCGTCGGTTTATCACCGTCGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- GTGCCAAGTTCTTCAAGAATTCTTCTGCCGTCGGTTTATCAC-GTCGATG
EV536990       <-- GTGCCAAGTTCTTCAAGAATTCTTCTGCCGTCGGTTTATCAC-GTCGATG
FD970069       <-- ..................................................
FD532922       <-- ..................................................
EY896945       <-- ..................................................
EY906526       <-- ..................................................
EY908170       <-- ..................................................
EY893374       --> G.................................................
FD966517       --> GTGCCAAGTTCTTCAAGAATTCTTCTGCCGTCGGTTTATCACCGTCGATG
EV541322       --> GTGCCAAGTTCTTCAAGAATTCTTCTGCCGTCGGTTTATCACCGTCGATG
EV531657       --> GTGCCAAGTTCTTCAAGAATTCTTCTGCCGTCGGTTTATCACCGTCGATG

               301    -    351
UN19335        --> AGATCGGTCACTGCTTTTAAGAAAATTACTGGTACTTTCAGAAGCTCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- AGATCGGTCACTGCTTTTAAGAAAATTACTGGTACTTTCAGAAGCTCAGC
EV536990       <-- AGATCGGTCACTGCTTTTAAGAAAATTACTGGTACTTTCAGAAGCTCAGC
FD970069       <-- ....................GAAAATTACTGGTACTTTCAGAAGCTCAGC
FD532922       <-- ...................aagAAATTACTGGTACTTTCAGAAGCTCAGC
EY896945       <-- ..................................................
EY906526       <-- ..................................................
EY908170       <-- ..................................................
EY893374       --> ..................................................
FD966517       --> AAATCGGTCACTGCTTTTAAAAAAATTACTGGTACTTTCAAAAGCTCAGC
EV541322       --> AGATCGGTCACTGCTTTTAAGAAAATTACTGGTACTTTCAGAAGCTCAGC
EV531657       --> AGATCGGTCACTGCTTTTAAGAAAATTACTGGTACTTTCAGAAGCTCAGC

               351    -    401
UN19335        --> AACGTAAGCCACGGCAGCACCCTCCATGTCCTTAAGCGTTGCATCATTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- AACGTAAGCCACGGCAGCACCCTCCATGTCCTTAAGCGTTGCATCATTGG
EV536990       <-- AACGTAAGCCACAGCAGCACCCTCCATGTC-TTAAGCGTTGCATCATTGG
FD970069       <-- AACGTAAGCCACGGCAGCACCCTCCATGTC-TTAAGCGTTGCATCATTGG
FD532922       <-- AACGTAAGCCACAGCAGCACCCTCCATGTC-TTAAGCGTTGCATCATTGG
EY896945       <-- ..................................................
EY906526       <-- ..................................................
EY908170       <-- ..................................................
EY893374       --> ..................................................
FD966517       --> AACGTAAGCCACGGCAGCACCCTCCATGTCCTTAAGCGTTGCATCATTGG
EV541322       --> AACGTAAGCCACAGCAGCACCCTCCATGTCCTTAAGCGTTGCATCATTGG
EV531657       --> AACGTAAGCCACGGCAGCACCCTCCATGTCCTTAAGCGTTGCATCATTGG

               401    -    451
UN19335        --> CAATGATGAGTGATTCATCTTGGGTGGACATATCCAAGGAGTCACCAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- CAATGATGAGTGATTCATCTTGGGTGGACATATCCAAGGAGTCACCAGTA
EV536990       <-- CAATGATGAGTGATTCATCTTGGGTGGACATATCCAAGGAGTCACCAGTA
FD970069       <-- CAATGATGAGTGATTCATCTTGGGTGGACATATCCAAGGAGTCACCAGTA
FD532922       <-- CAATGATGAGTGATTCATCTTGGGTGGACATATCCAAGGAGTCACCAGTA
EY896945       <-- ..................................................
EY906526       <-- ..................................................
EY908170       <-- ..................................................
EY893374       --> ..................................................
FD966517       --> CAATGATGAGTGATTCATCTTGGGTGGACATATCCAAGGAGTCACCAGTA
EV541322       --> CAATGATGAGTGATTCATCTTGGGTGGACATATCCAAGGAGTCACCAGTA
EV531657       --> CAATGATGAGTGATTCATCTTGGGTGGACATATCCAAGGAGTCACCAGTA

               451    -    501
UN19335        --> GATAACCTGCCAATCTTGAGATTGAGGTGGTTGAGGAGATTGGGGGTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- GATAACCTGCCAATCTTGAGATTGAGGTGGTTGAGGAGATTGGGGGTTGA
EV536990       <-- GATAACCTGCCAATCTTGAGATTGAGGTGGTTGAGGAGATTGGGGGTTGA
FD970069       <-- GATAACCTGCCAATCTTGAGATTGAGGTGGTTGAGGAGATTGGGGGTTGA
FD532922       <-- GATAACCTGCCAATCTTGAGATTGAGGTGGTTGAGGAGATTGGGGGTTGA
EY896945       <-- ..........CAATCTTGAGATTGAGGTGGTTGAGGAGATTGGGGGTTGA
EY906526       <-- ..........CAATCTTGAGATTGAGGTGGTTGAGGAGATTGGGGGTTGA
EY908170       <-- ..................................................
EY893374       --> ..................................................
FD966517       --> AATAACCTGCCAATCTTGAAATTGAGGTGGTTGAGGAGATTGGGGGTTGA
EV541322       --> GATAACCTGCCAATCTTGAGATTGAGGTGGTTGAGGAGATTGGGGGTTGA
EV531657       --> GATAACCTGCCAATCTTGAGATTGAGGTGGTTGAGGAGATTGGGGGTTGA

               501    -    551
UN19335        --> GAAGGCCTGACGAAGACCAACTCCATACAGATCAAACATAGGGATAGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- GAATGCCTGACGAAGACCAACTCCATACAGATCAAACATAGGGATAGGTA  Raphanus raphanistrum subsp. maritimus
EV536990       <-- GAAGGCCTGACGAAGACCAACTCCATACAGATCAAACATAGGGATAGGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970069       <-- GAAGGCCTGACGAAGACCAACTCCATACAGATCAAACATAGGGATAGGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD532922       <-- GAATGCCTGACGAAGACCAACTCCATACAGATCAAACATAGGGATAGGTA  Raphanus raphanistrum subsp. maritimus
EY896945       <-- GAATGCCTGACGAAGACCAACTCCATACAGATCAAACATAGGGATAGGTA  Raphanus raphanistrum subsp. maritimus
EY906526       <-- GAAGGCCTGACGAAGACCAACTCCATACAGATCAAACATAGGGATAGGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908170       <-- ........GACGAAGACCAACTCCATACAGATCAAACATAGGGATAGGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY893374       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD966517       --> GAAGGCCTGACGAAAACCAACTCCATACAGATCAAACATAGGGATAGGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541322       --> GAAGGCCTGACGAAGACCAACTCCATACAGATCAAACATAGGGATAGGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531657       --> GAATGCCTGACGAAAACCAACTCCATACAGATCAAACATAGGGATAGGTA  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN19335        --> TTCTACGAGCATGGAAGACAACATCAGATGCAAGAAATACATCGCCTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- TTCTACGATCATGGAAGACAACATCAGATGCAAGAAATACATCGCCTATG  Raphanus raphanistrum subsp. maritimus
EV536990       <-- TTCTACGAGCATGGAAGACAACATCAGATGCAAGAAATACATCGCCTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970069       <-- TTCTACGAGCATGGAAGACAACATCAGATGCAAGAAATACATCGCCTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD532922       <-- TTCTACGATCATGGAAGACAACATCAGATGCAAGAAATACATCGCCTATG  Raphanus raphanistrum subsp. maritimus
EY896945       <-- TTCTACGATCATGGAAGACAACATCAGATGCAAGAAATACATCGCCTATG  Raphanus raphanistrum subsp. maritimus
EY906526       <-- TTCTACGAGCATGGAAGACAACATCAGATGCAAGAAATACATCGCCTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908170       <-- TTCTACGAGCATGGAAGACAACATCAGATGCAAGAAATACATCGCCTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY893374       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD966517       --> TTCTACGAGCATGGAAGACAACATCAGATGCAAGAAATA...........  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541322       --> TTCTACGAGCATGGAAGACAACATCAGATGCAAGAAATACATCGCCTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531657       --> TTCTACGATCATGGAAGACAACATCAGATGCAAGAAATACATCGCCTATG  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN19335        --> TTGGCTCCTTTAACCTTAAAGGCACCGCAGGTACCGGCATTGATAAGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- TTGGCTCCTTTAACCTTAAAGGCACCGCAGGTACTGGCATTGATAAGAAT
EV536990       <-- TTGGCTCCTTTAACCTTAGAGGCACCGCAGGTACCGGCATTGATAAGAAT
FD970069       <-- TTGGCTCCTTTAACCTTAAAGGCACCGCAGGTACCGGCATTGATAAGAAT
FD532922       <-- TTGGCTCCTTTAACCTTAAAGGCACCGCAGGTACCGGCATTGATAAGAAT
EY896945       <-- TTGGCTCCTTTAACCTTAAAGGCACCGCAGGTACCGGCATTGATAAGAAT
EY906526       <-- TTGGCTCCTTTAACCTTAAAGGCACCGCAGGTACCGGCATTGATAAGAAT
EY908170       <-- TTGGCTCCTTTAACCTTAAAGGCACCGCAGGTACCGGCATTGATAAGAAT
EY893374       --> ..................................................
FD966517       --> ..................................................
EV541322       --> TTGGCTCCTTTAACCTTAGAGGCACCGCAGGTACCGGCATTGATAAGAAT
EV531657       --> TTGGCTCCTTTAACCTTAAAGGCACCGCAGGTACTGGCATTGATAAGAAT

               651    -    701
UN19335        --> GTCAGGGTGTAAGGCTTGGATAGAAGCAAAGGTAACGAGAGAAGAAGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- GTCAGGGTGTAAGGCTTGGATAGAAGCAAAGGTAACGAGAGAAGAAGGAA
EV536990       <-- GTCAGGGTGTAAGGCTTGGATAGAAGCAAAGGTAACGAGAGAAGAAGGAA
FD970069       <-- GTCAGGGTGTAAGGCTTGGATAGAAGCAAAGGTAACGAGAGAAGAAGGAA
FD532922       <-- GTCAGGGTGTAAGGCTTGGATAGAAGCAAAGGTAACGAGAGAAGAAGGAA
EY896945       <-- GTCAGGGTGTAAGGCTTGGATAGAAGCAAAGGTAACGAGAGAAGAAGGAA
EY906526       <-- GTCAGGGTGTAAGGCTTGGATAGAAGCAAAGGTAACGAGAGAAGAAGGAA
EY908170       <-- GTCAGGGTGTAAGGCTTGGATAGAAGCAAAGGTAACGAGAGAAGAAGGAA
EY893374       --> ..................................................
FD966517       --> ..................................................
EV541322       --> GTCAGGGTGTAAGGCTTGGATAGAAGCAAAGGTAACGAGAGAAGAAGGAA
EV531657       --> GTCAGGGTGTAAGGCTTGGATAGAAGCAAAGGTAACGAGAGAAGAAGGAA

               701    -    751
UN19335        --> CAGTTCCAACACAATCAATCCCTAAAGAAGG-ATCCTTGCCGGGGCAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- CAGTTCCAACACAATCAATCCCTAAAGAAGA-ATCCTTGCCGGGGCAGAC  Raphanus raphanistrum subsp. maritimus
EV536990       <-- CAGTTCCAACACAATCAATCCCTAAAGAAGG-ATCCTTGCCGGGGCAGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970069       <-- CAGTTCCAACACAATCAATCCCTAAAGAAGG-ATCCTTGCCGGGGCAGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD532922       <-- CAGTTCCAACACAATCAATCCCTAAAGAAGA-ATCCTTGCCGGGGCAGAC  Raphanus raphanistrum subsp. maritimus
EY896945       <-- CAGTTCCAACACAATCAATCCCTAAAGAAGA-ATCCTTGCCGGGGCAGAC  Raphanus raphanistrum subsp. maritimus
EY906526       <-- CAGTTCCAACACAATCAATCCCTAAAGAAGG-ATCCTTGCCGGGGCAGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908170       <-- CAGTTCCAACACAATCAATCCCTAAAGAAGG-ATCCTTGCCGGGGCAGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY893374       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD966517       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541322       --> CAGTTCCAACACAATCAATCCCTAAAGAAGGGATCCTTGCCGGGGCAGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531657       --> CAGTTCCAACACAATCAATCCCTAAAGAAGA-ATCCTTGCCGGGGCAGAC  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN19335        --> AACATAGATACGAAGATCTCTATGAAAACCTTGATACACAACCCACGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- AACATAGATACGAAGATGTCTATGAAAACCTTGATACACAACCCACGGCA  Raphanus raphanistrum subsp. maritimus
EV536990       <-- AACATAGATACGAAGATCTCTATGAAAACCTTGATACACAACCCACGGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970069       <-- AACATAGATACGAAGATCTCTATGAAAACCTTGATACACAACCCACGGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD532922       <-- AACATAGATACGAAGATGTCTATGAAAACCTTGATACACAACCCACGGCA  Raphanus raphanistrum subsp. maritimus
EY896945       <-- AACATAGATACGAAGATGTCTATGAAAACCTTGATACACAACCCACGGCA  Raphanus raphanistrum subsp. maritimus
EY906526       <-- AACATAGATACGAAGATCTCTATGAAAACCTTGATACACAACCCACGGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908170       <-- AACATAGATACGAAGATCTCTATGAAAACCTTGATACGCAACCCACGGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY893374       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD966517       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541322       --> AACATAGATACGAAGATCTCTATGAAAACCTTGATACACAACCCACGGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531657       --> AACATAGATACGAAGATGTCTATGAAAACCTTGATACACAACCCACGGCA  Raphanus raphanistrum subsp. maritimus

               801    -    851
UN19335        --> ATCCTTTACTACCACCAAGCGGAGAATCATCACAAGTAGTTTCGGAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- ATCCTTTACTACCACCAAGCGGAGAATCATCACAAGTAGTTTCGGAGAGT
EV536990       <-- ATCCTTTACTACCACCAAGCGGAAAATCATCACAAGTAGTTTCGGAGAGT
FD970069       <-- ATCCTTTACTACCACCAAGCGGAGAATCATCACAAGTAGTTTCGGAGAGT
FD532922       <-- ATCCTTTACTACCACCAAGCGGAGAATCATCACAAGTAGTTTCGGAGAGT
EY896945       <-- ATCCTTTACTACCACCAAGCGGAGAATCATCACAAGTAGTTTCGGAGAGT
EY906526       <-- ATCCTTTACTACCACCAAGCGGAGAATCATCACAAGTAGTTTCGGAGAGT
EY908170       <-- ATCCTTTACTACCACCAAGCGGAGAATCATCACAAGTAGTTTCGGAGAGT
EY893374       --> ..................................................
FD966517       --> ..................................................
EV541322       --> ATCCTTTACTACCACCAAGCGGAAAATCATCACAAGTAGTTTCGGAGAGT
EV531657       --> ATCCTTTACTACCACCAAGCGGAGAATCATCACAAGTAGTTTCGGAGAGT

               851    -    901
UN19335        --> CCCAACTTGTTGACCAGAGGTTGAGCCTCCGCTTGCATAGCGATGACGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- CCCAACTTGTTGACCAGAGGTTGAGCCTCCGCTTGCATAGCGGTGACGAA
EV536990       <-- CCCAACTTGTTGACCAGAGGTTGAGCCTCCGCTTGCATAGCGATGACGAA
FD970069       <-- CCCAACTTGTTGACCAGAGGTTGAGCCTCCGCTTGCATAGCGATGACGAA
FD532922       <-- CCCAACTTGTTGACCAGAGGTTGAGCCTCCGCTTGCATAGCGATGACGAA
EY896945       <-- CCCAACTTGTTGACCAGAGGTTGAGCCTCCGCTTGCATAGCGATGACGAA
EY906526       <-- CCCAACTTGTTGACCAGAGGTTGAGCCTCCGCTTGCATAGCGATGACGAA
EY908170       <-- CCCAACTTGTTGACCAGAGGTTGAGCCTCCGCTTGCATAGCGATGACGAA
EY893374       --> ..................................................
FD966517       --> ..................................................
EV541322       --> CCCAACTTGTTGACC...................................
EV531657       --> CCCAACTTGTTGACCAGAGGTTGAGCCTCCGCTTGCATAGCGGTGACGAA

               901    -    951
UN19335        --> GACGACCGTGGAGATAGGTCGACCAAGACTCTTCTCCGATTCCATCTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- GACGACCGTGGAGATAGGTCGACCAAGACTCTTCTCCGATTCCATCTCAC  Raphanus raphanistrum subsp. maritimus
EV536990       <-- GACGACCGCGGAGATAGGTCGACCAAGACACTTCTCCGATTCCATCTCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970069       <-- GACGACCGTGGAGATAGGTCGACCAAGACACTTCTCCGATTCCATCTCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD532922       <-- GACGACCGTGGAGATAGGTCGACCAAGACTCTTCTCCGATTCCATCTCAC  Raphanus raphanistrum subsp. maritimus
EY896945       <-- GACGACCGTGGAGATAGGTCGACCAAGACTCTTCTCCGATTCCATCTCAC  Raphanus raphanistrum subsp. maritimus
EY906526       <-- GACGACCGTGGAGATAGGTCGACCAAGACACTTCTCCGATTCCATCTCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908170       <-- GACGACCGTGGAGATAGGTCGACCAAGACACTTCTCCGATTCCATCTCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY893374       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD966517       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541322       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531657       --> GACGACCGTGGAGATAGGTCGACCAAGACTCTTCTCCGAT..........  Raphanus raphanistrum subsp. maritimus

               951    -   1001
UN19335        --> TTGTTTCATCTCCTCCCTCACCACCCATTACCTTTCCTCTCTAGTTATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- TTGTTTCATCTCCTCCCTCACCACCCATTACCT.................
EV536990       <-- TTGTTTCATCTCCTCCCTCACCACCCATTACCTTTCCTCTCTAGTTATGC
FD970069       <-- TTGTTTCATCTCCTCCCTCACCACCCATTACCTTTCCTCTCTAGTTATGC
FD532922       <-- TTGTTTCATCTCCTCCCTC...............................
EY896945       <-- TTGTTTCATCTCCTCCCTCACCACCCATTACCTTACCTCTCTCGTTATGC
EY906526       <-- TTGTTTCATCTCCTCCCTCACCACCCATTACCTTTCCTCTCTAGTTATGC
EY908170       <-- TTGTTTCATCTCCTCCCTCACCACCCATTACCTTTCCTCTCTAGTTATGC
EY893374       --> ..................................................
FD966517       --> ..................................................
EV541322       --> ..................................................
EV531657       --> ..................................................

               1001   -   1051
UN19335        --> CTTTTTTATTCTTCCCCCGCCC...
                   ~~~~~~~~~~~~~~~~~~~~~~~~~
EV527400       <-- .........................
EV536990       <-- CTTTTTTAATCTTCCCCCcc.....
FD970069       <-- CTTTTTTATTCTTCCCCCGCCC...
FD532922       <-- .........................
EY896945       <-- CTTTTTTATTCTTCCCCCc......
EY906526       <-- CTTTTTTATTCTTCCCCCGCCC...
EY908170       <-- CTTTTTTATTCTTCCCCCGCaaaaa
EY893374       --> .........................
FD966517       --> .........................
EV541322       --> .........................
EV531657       --> .........................