RadishBase

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Alignment for radish unigene UN19373

               1      -     51
UN19373        --> GGCACAAACAGCATATTTTTACCATTTATTTTCCTATTTAGTTTATCATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921469       <-- ..................................................
FD532880       <-- ..................................................
FD981119       <-- ..................................................
EX770166       <-- ..................................................
EV526521       <-- ..................................................
EY924012       <-- ..................................................
FY434382       <-- ..................................................
FD978634       <-- ..................................................
FD939980       <-- ..................................................
FD966279       <-- ..................................................
EX887371       <-- ..................................................
FD935968       --> GGCACAAACAGCATATTTTTACCATTTATTTTCCTATTTAGTTTATCATA
FD961796       --> GGCACAAACAGCATATTTTTACCATTTATTTACCTATTTAGTTTATCATA
FD529226       --> .GCACAAACAGCATATTTTTACCATTTATTTACCTATTTAGTTTATCATA
FY436601       --> ....................ACCATTTATTTTCCTATTTAGTTTATCATA
EY917609       --> ....................gCCATTTATTTTCCTATTTAGTTTATCATA
FD976896       --> ..................................................
EV530974       --> ..................................................
FD974835       --> ..................................................
EX774414       --> ..................................................

               51     -    101
UN19373        --> TTCCTAAGAAAATTATAGGGAGAGACATAAATTTACATACAATTTATAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921469       <-- ........AAAATTATAGGGAGAGACATAAATTTACATACAATTTATAAA  Raphanus raphanistrum subsp. landra
FD532880       <-- ...........ATTATAGGGAGAGACATAAATCTACATACAATTTATAAA  Raphanus raphanistrum subsp. maritimus
FD981119       <-- .................GGGAGAGACATAAATTTACATACAATTTATAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX770166       <-- .....................GAGACATAAATTTACATACAATTTATAAA  Raphanus raphanistrum subsp. landra
EV526521       <-- ................................................AA  Raphanus raphanistrum subsp. maritimus
EY924012       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY434382       <-- ..................................................  Raphanus sativus cv GSK3-1
FD978634       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939980       <-- ..................................................  Raphanus sativus var. oleiformis
FD966279       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX887371       <-- ..................................................  Raphanus sativus var. oleiformis
FD935968       --> TTCCTAAGAAAATTATAGGGAGAGACATAAATCTACATACAATTTATAAA  Raphanus sativus var. oleiformis
FD961796       --> TTCCTAAGAAAATTATAGGGAGAGACATAAATCTACATACAATTTATAAA  Raphanus raphanistrum subsp. maritimus
FD529226       --> TTCCTAAGAAAATTATAGGGAGAGACATAAATCTACATACAATTTATAAA  Raphanus raphanistrum subsp. maritimus
FY436601       --> TTCCTAAGAAAATTATAGGGAGAGACATAAATCTACATACAATTTATAAA  Raphanus sativus cv GSK3-1
EY917609       --> TTCCTAAGAAAATTATAGGGAGAGACATAAATTTACATACAATTTATAAA  Raphanus raphanistrum subsp. landra
FD976896       --> ..CCTAAAAAAATTATAGGGAGAGACATAAATTTACATACAATTTATAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530974       --> ................................................AA  Raphanus raphanistrum subsp. maritimus
FD974835       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX774414       --> ..................................................  Raphanus raphanistrum subsp. landra

               101    -    151
UN19373        --> CCAGGAAAAAAGCACTTATGGAACCATTCATACTATAACAAATCACGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921469       <-- CCAGGAAAAAAGCACTTATGGAACCATTCATACTATAACAAATCACGGTC
FD532880       <-- CCAGGAAAAAAGCACTTATGGAACCATTCATACTATAACAAATCACGGTC
FD981119       <-- CCAGGAAAAAAGCACTTATGGAACCATTCATACTATAACAAATCACGGTC
EX770166       <-- CCAGGAAAAAAGCACTTATGGAACCATTCATACTATAACAAATCACGGTC
EV526521       <-- CCAGGAAAAAAGCACTTATGGAACCATTCATACTATAACAAATCACGGTC
EY924012       <-- ...GGAAAAAAGCACTTATGGAACCATTCATACTATAACAAATCACGGTC
FY434382       <-- .................ATGGAACCATTCATACTATAACAAATCACGGTC
FD978634       <-- ...............................gCTATAACAAATCACGGTC
FD939980       <-- .............................................CGGTC
FD966279       <-- ..................................................
EX887371       <-- ..................................................
FD935968       --> CCAGGAAAAAAGCACTTATGGAACCATTCATACTATAACAAATCACGGTC
FD961796       --> CCAGGAAAAAAGCACTTATGGAACCATTCATACTATAACAAATCACGGTC
FD529226       --> CCAGGAAAAAAGCACTTATGGAACCATTCATACTATAACAAATCACGGTC
FY436601       --> CCAGGAAAAAAGCACTTATGGAACCATTCATACTATAACAAATCACGGTC
EY917609       --> CCAGGAAAAAAGCACTTATGGAACCATTCATACTATAACAAATCACGGTC
FD976896       --> CCAGGAAAAAAGCACTTATGGAACCATTCATACTATAACAAATCACGGTC
EV530974       --> CCAGGAAAAAAGCACTTATGGAACCATTCATACTATAACAAATCACGGTC
FD974835       --> ...............................gCTATAACAAATCACGGTC
EX774414       --> ..................................................

               151    -    201
UN19373        --> CATTCGACTCAACACTCTTTAGAATTACAAAAAGGAAAGCCTCTACTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921469       <-- CATTCGACTCAACACTCTTTAGAATTACAAAAAGGAAAGCCTCTACTTTG
FD532880       <-- CATTCGACTCAACACTCTTTAGAAT-ACAAAAAGGAAAGCCTCTACTTTG
FD981119       <-- CATTCGACTCAACACTCTTTAGAATTACAAAAAGGAAAGCCTCTACTTTG
EX770166       <-- CATTCGACTCAACACTCTTTAGAATTACAAAAAGGAAAGCCTCTACTTTG
EV526521       <-- CATTCGACTCAACACTCTTTAGAATTACAAAAAGGAAAGCCTCTACTTTG
EY924012       <-- CATTCGACTCAACACTCTTTAGAATTACAAAAAGGAAAGCCTCTACTTTG
FY434382       <-- CATTCGACTCAACACTCTTTAGAATTACAAAAAGGAAAGCCTCTACTTTG
FD978634       <-- CATTCGACTCAACACTCTTTAGAATTACAAAAAGGAAAGCCTCTACTTTG
FD939980       <-- CATTCGACTCAACACTCTTTAGAATTACAAAAAGGAAAGCCTCTACTTTG
FD966279       <-- ................................AGGAAAGCCTCTACTTTG
EX887371       <-- ............................................ACTTTG
FD935968       --> CATTCGACTCAACACTCTTTAGAATTACAAAAAGGAAAGCCTCTACTTTG
FD961796       --> CATTCGACTCAACACTCTTTAGAATTACAAAAAGGAAAGCCTCTACTTTG
FD529226       --> CATTCGACTCAACACTCTTTAGAATTACAAAAAGGAAAGCCTCTACTTTG
FY436601       --> CATTCGACTCAACACTCTTTAGAATTACAAAAAGGAAAGCCTCTACTTTG
EY917609       --> CATTCGACTCAACACTCTTTAGAATTACAAAAAGGAAAGCCTCTACTTTG
FD976896       --> CATTCAACTCAACACTCTTTAAAATTACAAAAAGGAAAGCCTCTACTTTG
EV530974       --> CATTCGACTCAACACTCTTTAGAATTACAAAAAGGAAAGCCTCTACTTTG
FD974835       --> CATTCGACTCAACACTCTTTAGAATTACAAAAAGGAAAGCCTCTACTTTG
EX774414       --> ..................................................

               201    -    251
UN19373        --> GTTCAGAGACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921469       <-- GTTCAGAGACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
FD532880       <-- GTTCAGAGACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
FD981119       <-- GTTCAGAGACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
EX770166       <-- GTTCAGAGACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
EV526521       <-- GTTCAGAGACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
EY924012       <-- GTTCAGAGACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
FY434382       <-- GTTCAGAGACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
FD978634       <-- GTTCAGAGACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
FD939980       <-- GTTCAGAGACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
FD966279       <-- GTTCAGAGACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
EX887371       <-- GTTCAGAGACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
FD935968       --> GTTCAGAGACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
FD961796       --> GTTCAGAAACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
FD529226       --> GTTCAGAGACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
FY436601       --> GTTCAGAGACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
EY917609       --> GTTCAGAAACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
FD976896       --> GTTCAAAAACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
EV530974       --> GTTCAGAGACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
FD974835       --> GTTCAGAGACACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG
EX774414       --> .........CACTCTTTCACTTACATTCACACTTTATTTAGTTAACGGTG

               251    -    301
UN19373        --> ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAGAAGCTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921469       <-- ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAGAAGCTGTA
FD532880       <-- ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAGAAGCTGTA
FD981119       <-- ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAGAAGCTGTA
EX770166       <-- ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAGAAGCTGTA
EV526521       <-- ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAGAAGCTGTA
EY924012       <-- ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAGAAGCTGTA
FY434382       <-- ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAGAAGCTGTA
FD978634       <-- ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAGAAGCTGTA
FD939980       <-- ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAGAAGCTGTA
FD966279       <-- ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAGAAGCTGTA
EX887371       <-- ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAGAAGCTGTA
FD935968       --> ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAGAAGCTGTA
FD961796       --> ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAAAAGCTGTA
FD529226       --> ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAGAAGCTGTA
FY436601       --> ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAGAAGCTGTA
EY917609       --> ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAAAAGCTGTA
FD976896       --> ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAAAAGCTGTA
EV530974       --> ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAGAAGCTGTA
FD974835       --> ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAGAAGCTGTA
EX774414       --> ACTTTACCGACCATACCAGCACCCTGATGGGGCGCACAATAAAAGCTGTA

               301    -    351
UN19373        --> AGTCCCAGGCTCGGTCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921469       <-- AGTCCCAGGCTCGCTCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus raphanistrum subsp. landra
FD532880       <-- AGTCCCAGGCTCGGTCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus raphanistrum subsp. maritimus
FD981119       <-- AGTCCCAGGCTCGCTCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX770166       <-- AGTCCCAGGCTCGCTCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus raphanistrum subsp. landra
EV526521       <-- AGTCCCAGGCTCGGTCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus raphanistrum subsp. maritimus
EY924012       <-- AGTCCCAGGCTCGCTCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus raphanistrum subsp. landra
FY434382       <-- AGTCCCAGGCTCGATCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus sativus cv GSK3-1
FD978634       <-- AGTCCCAGGCTCGGTCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939980       <-- AGTCCCAGGCTCGGTCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus sativus var. oleiformis
FD966279       <-- AGTCCCAGGCTCGGTCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus raphanistrum subsp. maritimus
EX887371       <-- AGTCCCAGGCTCGATCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus sativus var. oleiformis
FD935968       --> AGTCCCAGGCTCGGTCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus sativus var. oleiformis
FD961796       --> AGTCCCAGGCTCGGTCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus raphanistrum subsp. maritimus
FD529226       --> AGTCCCAGGCTCGGTCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus raphanistrum subsp. maritimus
FY436601       --> AGTCCCAGGCTCGATCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus sativus cv GSK3-1
EY917609       --> AGTCCCAGGCTCGCTCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus raphanistrum subsp. landra
FD976896       --> AGTCCCAGGCTCGCTCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530974       --> AGTCCCAGGCTCGGTCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus raphanistrum subsp. maritimus
FD974835       --> AGTCCCAGGCTCGGTCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX774414       --> AGTCCCAGGCTCGCTCAAAGCAACCTCGTACGTCTCTCCCGCAGCGTTGA  Raphanus raphanistrum subsp. landra

               351    -    401
UN19373        --> GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCACTCGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921469       <-- GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCACTCGGG  Raphanus raphanistrum subsp. landra
FD532880       <-- GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCACTAGGG  Raphanus raphanistrum subsp. maritimus
FD981119       <-- GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCACTCGGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX770166       <-- GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCACTCGGG  Raphanus raphanistrum subsp. landra
EV526521       <-- GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCGCTAGGG  Raphanus raphanistrum subsp. maritimus
EY924012       <-- GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCACTCGGG  Raphanus raphanistrum subsp. landra
FY434382       <-- GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCACTCGGG  Raphanus sativus cv GSK3-1
FD978634       <-- GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCACTCGGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939980       <-- GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCACTCGGG  Raphanus sativus var. oleiformis
FD966279       <-- GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCACTAGGG  Raphanus raphanistrum subsp. maritimus
EX887371       <-- GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCACTCGGG  Raphanus sativus var. oleiformis
FD935968       --> GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCACTCGGG  Raphanus sativus var. oleiformis
FD961796       --> GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCACTAGGG  Raphanus raphanistrum subsp. maritimus
FD529226       --> GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCACTAGGG  Raphanus raphanistrum subsp. maritimus
FY436601       --> GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCACTCGGG  Raphanus sativus cv GSK3-1
EY917609       --> GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCACTCGGG  Raphanus raphanistrum subsp. landra
FD976896       --> GTAAATCTTGCTCGTCCATGGAAATCTTGCTCGCGTCAACACCACTCGGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530974       --> GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCGCTAGGG  Raphanus raphanistrum subsp. maritimus
FD974835       --> GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCACTCGGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX774414       --> GTAGATCTTGCTCGTCCATGGAGATCTTGCTCGCGTCAACACCACTCGGG  Raphanus raphanistrum subsp. landra

               401    -    451
UN19373        --> ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921469       <-- ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
FD532880       <-- ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
FD981119       <-- ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
EX770166       <-- ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
EV526521       <-- ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
EY924012       <-- ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
FY434382       <-- ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
FD978634       <-- ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
FD939980       <-- ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
FD966279       <-- ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
EX887371       <-- ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
FD935968       --> ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
FD961796       --> ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
FD529226       --> ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
FY436601       --> ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
EY917609       --> ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
FD976896       --> ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
EV530974       --> ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
FD974835       --> ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT
EX774414       --> ATCTCGTCCTCATCGAACACAACATTGTGTGGGAATCCAGCGTTGTTCTT

               451    -    501
UN19373        --> GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGAACGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921469       <-- GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGAACGAAAG
FD532880       <-- GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGAACGAAAG
FD981119       <-- GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGGACGAAAG
EX770166       <-- GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGAACGAAAG
EV526521       <-- GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGAACGAAAG
EY924012       <-- GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGAACGAAAG
FY434382       <-- GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGGACGAAAG
FD978634       <-- GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGAACGAAAG
FD939980       <-- GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGAACGGAAG
FD966279       <-- GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGAACGAAAG
EX887371       <-- GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGGACGAAAG
FD935968       --> GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGAACGGAAG
FD961796       --> GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGAACGAAAG
FD529226       --> GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGAACGAAAG
FY436601       --> GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGG........
EY917609       --> GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGAACGAAAG
FD976896       --> GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGGACAAAAG
EV530974       --> GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGAACGAAAG
FD974835       --> GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGAACGAAAG
EX774414       --> GAACACAATCTTCTCTCCTTTCGCTATTGTGAACTCGTTGGGAACGAAAG

               501    -    551
UN19373        --> CTAACGCTCCATCTCCTGATCCCAAGAGAACATCTATCGCCATGGCGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921469       <-- CTAACGCTC-ATCTCCTGATCCCAAGAGAACATCTATCGCCATGGCGTTT
FD532880       <-- CTAACGCTCCATCTCCTGATCCCAAGAGAACATCTATCGCCATGGCGTTT
FD981119       <-- CTAACGCTCCATCTCCTGATCCCAAGAGAACATCTATCGCCATGGCGTTT
EX770166       <-- CTAACGCTCCATCTCCTGATCCCAAGAGAACATCTATCGCCATGGCGTTT
EV526521       <-- CTAACGCTCCATCTCCTGATCCCAAGAGAACATCTATCGCCATGGCGTTT
EY924012       <-- CTAACGCTCCATCTCCTGATCCCAAGAGAACATCTATCGCCATGGCGTTT
FY434382       <-- CTAACGCTCCATCTCCTGATCCCAAGAGAACATCTATCGCCATGGCGTTT
FD978634       <-- CTAACGCTCCATCTCCTGATCCCAAGAGAACATCTATCGCCATGGCGTTT
FD939980       <-- CTAACGCTCCATCTCCTGATCCCAAGAGAACATCTATCGCCATGGCGTTT
FD966279       <-- CTAACGCTCCATCTCCTGATCCCAAGAGAACATCTATCGCCATGGCGTTT
EX887371       <-- CTAACGCTCCATCTCCTGATCCCAAGAGAACATCTATCGCCATGGCGTTT
FD935968       --> CTAACGCTCCATCTCCTGATCCCA..........................
FD961796       --> CTAACGCTCCATCTCCTGATCCCA..........................
FD529226       --> CTAACGCTCCATCTCCTGATCCCAAGAGAACATCTATCGCCATGGCGTTT
FY436601       --> ..................................................
EY917609       --> CTAACGCTC-ATCTCCTGATCCCAAGAGAACATCTATCGCCATGGCGTTT
FD976896       --> CTAACGCTCCATCTCCTGATCCCAAAAAAACATCTATCGCCATGGCGTTT
EV530974       --> CTAACGCTCCATCTCCTGATCCCAAGAGAACATCTATCGCCATGGCGTTT
FD974835       --> CTAACGCTCCATCTCCTGATCCCAAGAGAACATCTATCGCCATGGCGTTT
EX774414       --> CTAACGCTCCATCTCCTGATCCCAAGAGAACATCTATCGCCATGGCGTTT

               551    -    601
UN19373        --> CCAGCCAAAGCGATTGAAGCTGCAGCCGCTACGGCCGCGACTCCGAAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921469       <-- CCAGCCAAAGCGATTGAAGCTGCAGCAGCTACGGCCGCGACTCCGAAGTC  Raphanus raphanistrum subsp. landra
FD532880       <-- CCAGCCAAAGCGATTGAAGCCGCAGCCGCTACGGCCGCGACTCCGAAGTC  Raphanus raphanistrum subsp. maritimus
FD981119       <-- CCAGCCAAAGCGATTGAAGCTGCAGCAGCTACGGCCGCGACTCCGAAGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX770166       <-- CCAGCCAAAGCGATTGAAGCTGCAGCAGCTACGGCCGCGACTCCGAAGTC  Raphanus raphanistrum subsp. landra
EV526521       <-- CCAGCCAAAGCGATTGAAGCCGCAGCCGCTACGGCCGCGACTCCGAAGTC  Raphanus raphanistrum subsp. maritimus
EY924012       <-- CCAGCCAAAGCGATTGAAGCTGCAGCAGCTACGGCCGCGACTCCGAAGTC  Raphanus raphanistrum subsp. landra
FY434382       <-- CCAGCCAAAGCGATTGAAGCTGCAGCAGCTACGGCCGCGACTCCGAAGTC  Raphanus sativus cv GSK3-1
FD978634       <-- CCAGCCAAAGCGATTGAAGCTGCAGCCGCAACAGCCGCGACTCCGAAGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939980       <-- CCAGCCAAAGCGATTGAAGCTGCAGCCGCAACAGCCGCGACTCCGAAGTC  Raphanus sativus var. oleiformis
FD966279       <-- CCAGCCAAAGCGATTGAAGCCGCAGCCGCTACGGCCGCGACTCCGAAGTC  Raphanus raphanistrum subsp. maritimus
EX887371       <-- CCAGCCAAAGCGATTGAAGCTGCAGCAGCTACGGCCGCGACTCCGAAGTC  Raphanus sativus var. oleiformis
FD935968       --> ..................................................  Raphanus sativus var. oleiformis
FD961796       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD529226       --> CCAGCCAAAGCGATTGAAGCCGCAGCCGCTACGGCCGCGACTCCGAAGTC  Raphanus raphanistrum subsp. maritimus
FY436601       --> ..................................................  Raphanus sativus cv GSK3-1
EY917609       --> ..................................................  Raphanus raphanistrum subsp. landra
FD976896       --> CCAGCCAAAGCGATTGAAGCTGCAGCAGCTACGGC...............  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530974       --> CCAGCCAAAGCGATTGAAGCCGCAGCCGCTACGGCCGCGACTCCGAAGTC  Raphanus raphanistrum subsp. maritimus
FD974835       --> CCAGCCAAAGCGATTGAAGCTGCAGCCGCAACAGCCGCGACTCCGAAGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX774414       --> CCAGCCAAAGCGATTGAAGCTGCAGCAGCTACGGCCGCGACTCCGAAGTC  Raphanus raphanistrum subsp. landra

               601    -    651
UN19373        --> CTTTAGAGATGACTTCACGGTGAGCTTCCGTGATGTTGTGGGGATTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921469       <-- CTTTAGAGATGACTTCACGGTGAGCTTCCGTGATGTTGAGGGGATTTTGA  Raphanus raphanistrum subsp. landra
FD532880       <-- CTTTAGAGATGACTTCACGGTGAGCTTCCGTGATGTTGTGGGGATTTTGA  Raphanus raphanistrum subsp. maritimus
FD981119       <-- CTTTAGAGATGACTTCACGGTGAGCTTCCGTGATGTTGTGGGGATTTTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX770166       <-- CTTTAGAGATGACTTCACGGTGAGCTTCCGTGATGTTGTGGGGATTTTGA  Raphanus raphanistrum subsp. landra
EV526521       <-- CTTTAGAGATGACTTCACGGTGAGCTTCCGTGATGTTGTGGGGATTTTGA  Raphanus raphanistrum subsp. maritimus
EY924012       <-- CTTTAGAGATGACTTCACGGTGAGCTTCCGTGATGTTGTGGGGATTTTGA  Raphanus raphanistrum subsp. landra
FY434382       <-- CTTTAGAGATGACTTCACGGTGAGCTTCCGTGATGTTTTGGGGATTCTGA  Raphanus sativus cv GSK3-1
FD978634       <-- CTTTAGAGATGACTTCACGGTGAGCTTCCGTGATGTTTTGGGGATTCTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939980       <-- CTTTAGAGATGACTTCACGGTGAGCTTCCGTGATGTTTTGGGGATTCTGA  Raphanus sativus var. oleiformis
FD966279       <-- CTTTAGAGATGACTTCACGGTGAGCTTCCGTGATGTTGTGGGGATTTTGA  Raphanus raphanistrum subsp. maritimus
EX887371       <-- CTTTAGAGATGACTTCACGGTGAGCTTCCGTGATATTTTGGGGATTCTGA  Raphanus sativus var. oleiformis
FD935968       --> ..................................................  Raphanus sativus var. oleiformis
FD961796       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD529226       --> CTTTAGAGATGACTTCACGGTGAGCTTCCGTGATGTTGTGGGGATTTTGA  Raphanus raphanistrum subsp. maritimus
FY436601       --> ..................................................  Raphanus sativus cv GSK3-1
EY917609       --> ..................................................  Raphanus raphanistrum subsp. landra
FD976896       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530974       --> CTTTAGAGATGACTTCACGGTGAGCTTCCGTGATGTTGTGGGGATTTTGA  Raphanus raphanistrum subsp. maritimus
FD974835       --> CTTTAGAGATGACTTCACGGTGAGCTTCCGTGATGTTTTGGGGATTCTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX774414       --> CTTTAGAGATGACTT...................................  Raphanus raphanistrum subsp. landra

               651    -    701
UN19373        --> CGATGGCGGAGGGTTTGGAGATTGTGGATTTGAGACCGGTGAACGATGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921469       <-- CGATGGCGGAGGGTTTGGAGATTGTGGATTTGAGACCGGTGAACGATGGG
FD532880       <-- CGATGGCGGAGGGTTTGGAGATTGTGGATTTGAGACCGGTGAACGATGGG
FD981119       <-- CGATGGCGGAGGGTTTGGAGATTGTGGATTTGAGACCGGTGAACGATGGG
EX770166       <-- CGATGGCGGAGGGTTTGGAGATTGTGGATTTGAGACCGGTGAACGATGGG
EV526521       <-- CGATGGCGGAGGGTTTGGAGATCGTGGATTTGAGACCGGTGAACGATGGG
EY924012       <-- CGATGGCGGAGGGTTTGGAGATTGTGGATTTGAGACCGGTGAACGATGGG
FY434382       <-- CGATGGCGGAGGGTTTGGAGATTGTGGATTTGAGACCGGTGAACGATGGG
FD978634       <-- CGATGGCGGAGGGTTTGGAGATTGTGGATTTGAGACCGGTGAACGATGGG
FD939980       <-- CGATGGCGGAGGGTTTGGAGATCGTGGATTTGAGACCGGTGAACGATGGG
FD966279       <-- CGATGGCGGAGGGTTTGGAGATTGTGGATTTGAGACCGGTGAACGATGGG
EX887371       <-- CGATGGCGGAGGGTTTGGAGATTGTGGATTTGAGACCGGTGAACGATGGG
FD935968       --> ..................................................
FD961796       --> ..................................................
FD529226       --> CGATGGCGGAGGGTTTGGAGATTGTGGATTTGAGACCGGTGAACGATGGG
FY436601       --> ..................................................
EY917609       --> ..................................................
FD976896       --> ..................................................
EV530974       --> CGATGGCGGAGGGTTTGGAGATCGTGGATTTGAGACCGGTGAACGATGGG
FD974835       --> CGATGGCGGAGGGTTTGGAGATTGTGGATTTGAGACCGGTGAACGATGGG
EX774414       --> ..................................................

               701    -    751
UN19373        --> ATTGCGACGGTGGCTGAGGTTACTGAGGCCATGATGAAGAATATTAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921469       <-- ATTGCGACGGTGGCTGAGGTTACTGAGGCCATGATGAAGAATATTAGAGG  Raphanus raphanistrum subsp. landra
FD532880       <-- ATTGCGACGGTGGCTGAGGTTACTGAGGCCATGATGAA---GATTAGAGG  Raphanus raphanistrum subsp. maritimus
FD981119       <-- ATTGCGACGGTGGCTGAGGTTACTGAGGCCATGATGAAGAATATTAGAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX770166       <-- ATTGCGACGGTGGCTGAGGTTACTGAGGCCA...................  Raphanus raphanistrum subsp. landra
EV526521       <-- ATTGCGACGGTGGCTGAGGTTACTGAGGCCATGATGAA---GATTAGAGG  Raphanus raphanistrum subsp. maritimus
EY924012       <-- ATTGCGACGGTGGCTGAGGTTACTGAGGCCATGATGAAGAATATTAGAGG  Raphanus raphanistrum subsp. landra
FY434382       <-- ATTGCGACGGTGGCTGAGGTTACTGAGGCCATGATGAAGAATAT......  Raphanus sativus cv GSK3-1
FD978634       <-- ATTGCGACGGTGGCTGAGGTTACTGAGGCCATGATGAAGAATATTAGAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939980       <-- ATTGCGACGGTGGCTGAGGTTACTGAGGCCATGATGAAGAATATTAGAGG  Raphanus sativus var. oleiformis
FD966279       <-- ATTGCGACGGTGGCTGAGGTTACTGAGGCCATGATGAA---GATTAGAGG  Raphanus raphanistrum subsp. maritimus
EX887371       <-- ATTGCGACGGTGGCTGAGGTTACTGAGGCCACGATGAAGAATATTAGAGG  Raphanus sativus var. oleiformis
FD935968       --> ..................................................  Raphanus sativus var. oleiformis
FD961796       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD529226       --> ATTGCGACGGTGGCTGAGGTTACTGAGGCCATG.................  Raphanus raphanistrum subsp. maritimus
FY436601       --> ..................................................  Raphanus sativus cv GSK3-1
EY917609       --> ..................................................  Raphanus raphanistrum subsp. landra
FD976896       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530974       --> ATTGCGACGGTGGCTGAGGTTACTGAGGCCATGATGAAGA---TTAGAGG  Raphanus raphanistrum subsp. maritimus
FD974835       --> ATTGCGACGGTGGCTGAGGTTACTGAGGCCATGATGAAGAATATTAGAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX774414       --> ..................................................  Raphanus raphanistrum subsp. landra

               751    -    801
UN19373        --> CTTAGATTTACTT----TTTTTTT-GATATCTTTGTGTCGATTGAGAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921469       <-- CTTAGATTTACTT----TTTTTTT-TATATCTTTGTGTCGATTcc.....  Raphanus raphanistrum subsp. landra
FD532880       <-- CTTAGATTTACTTCTTTTTTTTTT-GATATCTTTGTGTCcc.........  Raphanus raphanistrum subsp. maritimus
FD981119       <-- CTTAGATTTACTT----TTTTTTT-TATATCc..................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX770166       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV526521       <-- CTTAGATTTACTTCTTTTTTTTTT-GATATCTTTGTGTCcc.........  Raphanus raphanistrum subsp. maritimus
EY924012       <-- CTTAGATTTACTT----TTTTTTT-TATATCTTTGTGTCc..........  Raphanus raphanistrum subsp. landra
FY434382       <-- ..................................................  Raphanus sativus cv GSK3-1
FD978634       <-- CTTAGATTTACTT----TTTTTTTTGATATCTTTGTGTCcc.........  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939980       <-- CTTAGATTTACTT----TTTTTTTTGATATCTTTGTGTCc..........  Raphanus sativus var. oleiformis
FD966279       <-- CTTAGATTTACTTCTTTTTTTTTT-GATATCTTTGTGTCcacc.......  Raphanus raphanistrum subsp. maritimus
EX887371       <-- CTTAGATTTACTT----TTTTTT--GATATCTTTGTGTCGATTGAGAAAT  Raphanus sativus var. oleiformis
FD935968       --> ..................................................  Raphanus sativus var. oleiformis
FD961796       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD529226       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FY436601       --> ..................................................  Raphanus sativus cv GSK3-1
EY917609       --> ..................................................  Raphanus raphanistrum subsp. landra
FD976896       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530974       --> CTTAGATTTACTTCTTTTTTTTTT-GATATCTTTGTGTCcc.........  Raphanus raphanistrum subsp. maritimus
FD974835       --> CTT...............................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX774414       --> ..................................................  Raphanus raphanistrum subsp. landra

               801    -    851
UN19373        --> TGTGAGGTGTATTAGTTTTATGTGGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921469       <-- ............................
FD532880       <-- ............................
FD981119       <-- ............................
EX770166       <-- ............................
EV526521       <-- ............................
EY924012       <-- ............................
FY434382       <-- ............................
FD978634       <-- ............................
FD939980       <-- ............................
FD966279       <-- ............................
EX887371       <-- TGTGAGGTGTATTAGTTTTATGTGGTTC
FD935968       --> ............................
FD961796       --> ............................
FD529226       --> ............................
FY436601       --> ............................
EY917609       --> ............................
FD976896       --> ............................
EV530974       --> ............................
FD974835       --> ............................
EX774414       --> ............................