Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN19386

               1      -     51
UN19386        --> GGAATCATCACAATCTCAAACCTAAAATAAATTAAAAGGAATCTACGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928926       <-- GGAATCATCACAATCTCAAACCTAAAATAAATTAAAAGGAATCTACGTTG
EV529888       <-- ....gaATCACAATCTCAAACCTAAAATAAATTAAAAGGAATCTACGTTG
EV529944       <-- ....ggATCACAATCTCAAACCTAAAATAAATTAAAAGGAATCTACGTTG
FD975616       <-- ....ggATCACAATCTCAAACCTAAAATAAATTAAAAGGAATCTACGTCG
EY932561       --> GGAATCATCACAATCTCAAACCTAAAATAAATTAAAAGGAATCTACGTTG
EY933459       --> GGAATCATCACAATCTCAAACCTAAAATAAATTAAAAGGAATCTACGTTG
EV525045       --> ....ggATCACAATCTCAAACCTAAAATAAATTAAAAGGAATCTACGTTG
EV525119       --> ....ggATCACAATCTCAAACCTAAAATAAATTAAAAGGAATCTACGTTG

               51     -    101
UN19386        --> AAGGAGAGAATAGAGAGAATGGGTCGCCAAAACGTTTTCGTAGTTTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928926       <-- AAGGAGAGAATAGAGAGAATGGGTCGCCAAAACGTTTTCGTAGTTTTTGG
EV529888       <-- AAGGAGAGAATAGAGAGAATGGGTCGCCAAAACGTTTTCGTAGTTTTTGG
EV529944       <-- AAGGAGAGAATAGAGAGAATGGGTCGCCAAAACGTTTTCGTAGTTTTTGG
FD975616       <-- AAGGAGAGAATAGAGAGAATGGGTCGCCAAAACGTTTTCGTAGTTTTTGG
EY932561       --> AAGGAGAGAATAGAGAGAATGGGTCGCCAAAACGTTTTCGTAGTTTTTGG
EY933459       --> AAGGAGAGAATAGAGAGAATGGGTCGCCAAAACGTTTTCGTAGTTTTTGG
EV525045       --> AAGGAGAGAATAGAGAGAATGGGTCGCCAAAACGTTTTCGTAGTTTTTGG
EV525119       --> AAGGAGAGAATAGAGAGAATGGGTCGCCAAAACGTTTTCGTAGTTTTTGG

               101    -    151
UN19386        --> CCTTGTGTTCTTGGCCGTCCTTGGCCTCGCAGCAGCTGCATCTTCTCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928926       <-- CCTTGTGTTCTTGGCCGTCCTTGGCCTCGCAGCAGCTGCATCTTCTCCAT
EV529888       <-- CCTTGTGTTCTTGGCCGTCCTTGGCCTCGCAGCAGCTGCATCTTCTCCAT
EV529944       <-- CCTTGTGTTTTTGGCCGTCCTTGGCCTCGCAGCAGCTGCATCTTCTCCAT
FD975616       <-- CCTTGTGTTCTTGGCCGTCCTTGGCCTCTCAGCAGCTGCATCTTCTCCAT
EY932561       --> CCTTGTGTTCTTGGCCGTCCTTGGCCTCGCAGCAGCTGCATCTTCTCCAT
EY933459       --> CCTTGTGTTCTTGGCCGTCCTTGGCCTCGCAGCAGCTGCATCTTCTCCAT
EV525045       --> CCTTGTGTTCTTGGCCGTCCTTGGCCTCGCAGCAGCTGCATCTTCTCCAT
EV525119       --> CCTTGTGTTCTTGGCCGTCCTTGGCCTCGCAGCAGCTGCATCTTCTCCAT

               151    -    201
UN19386        --> CTCCTTCATCGTCACCCTCCAAAGCTCCGTCTACTCCCACAACTGATGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928926       <-- CTCCTTCATCGTCACCCTCCAAAGCTCCGTCTACTCCCACAACTGATGTC
EV529888       <-- CTCCTTCATCGCCACCCTCCAAAGCTCCGTCTACTCCCACAACTGATGTC
EV529944       <-- CTCCTTCATCGTCACCCTCCAAAGCTCCGTCTACTCCCACAACTGATGTC
FD975616       <-- CTCCTTCATCGTCACCCTCCAAAGCTCCGTCTACTCCCACAACTGATGTC
EY932561       --> CTCCTTCATCGTCACCCTCCAAAGCTCCGTCTACTCCCACAACTGATGTC
EY933459       --> CTCCTTCATCGTCACCCTCCAAAGCTCCGTCTACTCCCACAACTGATGTC
EV525045       --> CTCCTTCATCGCCACCCTCCAAAGCTCCGTCTACTCCCACAACTGATGTC
EV525119       --> CTCCTTCATCGTCACCCTCCAAAGCTCCGTCTACTCCCACAACTGATGTC

               201    -    251
UN19386        --> GAAGCTCCAGTGTCCGAGGATACTATTGGAACCACCGACGACGATGCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928926       <-- GAAGCTCCAGTGTCCGAGGATACTATTGGAACCACCGACGACGATGCAGC
EV529888       <-- GAAGCTCCAGTGTCCGAGGATACTATTGGAACCACCGACGACGATGCAGC
EV529944       <-- GAAGCTCCAGTGTCCGAGGATACTATTGGAACCACCGACGACGATGCAGC
FD975616       <-- GAAGCTCCAGTGTCCGAGGATACTATTGGAACCACCGACGACGATGCAGC
EY932561       --> GAAGCTCCAGTGTCCGAGGATACTATTGGAACCACCGACGACGATGCAGC
EY933459       --> GAAGCTCCAGTGTCCGAGGATACTATTGGAACCACCGACGACGATGCAGC
EV525045       --> GAAGCTCCAGTGTCCGAGGATACTATTGGAACCACCGACGACGATGCAGC
EV525119       --> GAAGCTCCAGTGTCCGAGGATACTATTGGAACCACCGACGACGATGCAGC

               251    -    301
UN19386        --> TGCTTCTCCTGGTGACGGTGACGTGGCTGTCGCTGGTCCTCTAGGAAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928926       <-- TGCTTCTCCTGGTGACGGTGACGTGGCTGTCGCTGGTCCTCTAGGAAGTG
EV529888       <-- TGCTTCTCCTGGTGACGGTGACGTGGCTGTCGCTGGTCCTCTAGGAAGTG
EV529944       <-- TGCTTCTCCTGGTGACGGTGACGTGGCTGTCGCTGGTCCTCTAGGAAGTG
FD975616       <-- TGCTTCTCCTGGTGACGGTGACGTGGCTGTCGCTGGTCCTCTAGGAAGTG
EY932561       --> TGCTTCTCCTGGTGACGGTGACGTGGCTGTCGCTGGTCCTCTAGGAAGTG
EY933459       --> TGCTTCTCCTGGTGACGGTGACGTGGCTGTCGCTGGTCCTCTAGGAAGTG
EV525045       --> TGCTTCTCCTGGTGACGGTGACGTGGCTGTCGCTGGTCCTCTAGGAAGTG
EV525119       --> TGCTTCTCCTGGTGACGGTGACGTGGCTGTCGCTGGTCCTCTAGGAAGTG

               301    -    351
UN19386        --> ACTCCTCATATGGTAGCATTGCACCTTCAGGCCCTGCTGCTGACAGTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928926       <-- ACTCCTCATATGGTAGCATTGCACCTTCAGGCCCTGCTGCTGACAGTGGC  Raphanus sativus var. oleiformis
EV529888       <-- ACTCCTCATATGGTAGCATTGCACCTTCAGGCCCTGCTGCTGACAGTGGC  Raphanus raphanistrum subsp. maritimus
EV529944       <-- ACTCCTCATATGGTAGCATTGCACCTTCAGGCCCTGCTGCTGACAGTGGC  Raphanus raphanistrum subsp. maritimus
FD975616       <-- ACTCCTCATATGGTAGCATTGCACCTTCAGGCCCTGCTGCTGACAGTGGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY932561       --> ACTCCTCATATGGTAGCATTGCACCTTCAGGCCCTGCTGCTGACAGTGGC  Raphanus sativus var. oleiformis
EY933459       --> ACTCCTCATATGGTAGCATTGCACCTTCAGGCCCTGCTGCTGACAGTGGC  Raphanus sativus var. oleiformis
EV525045       --> ACTCCTCATATGGTAGCATTGCACCTTCAGGCCCTGCTGCTGACAGTGGC  Raphanus raphanistrum subsp. maritimus
EV525119       --> ACTCCTCATATGGTAGCATTGCACCTTCAGGCCCTGCTGCTGACAGTGGC  Raphanus raphanistrum subsp. maritimus

               351    -    401
UN19386        --> GCGGCGGCTCTTGGTGTCTCTGCGGTCGTTGTTGGTGTTACATCCATCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928926       <-- GCGGCGGCTCTTGGTGTCTCTGCAGTCGTTGTTGGTGTTACATCCATCGC  Raphanus sativus var. oleiformis
EV529888       <-- ACGGCGGCTCTTGGTGTCTCTGCGGTCGTTGTTGGTGTTACATCCATCGC  Raphanus raphanistrum subsp. maritimus
EV529944       <-- ACGGCGGCTCTTGGTGTCTTTGCGGTCGTTGTTGGTGTTACATCCATCGC  Raphanus raphanistrum subsp. maritimus
FD975616       <-- GCGGCGGCTCTTGGTGTCTCTGCAGTCGTTGTTGGTGTTACATCCATCGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY932561       --> GCGGCGGCTCTTGGTGTCTCTGCAGTCGTTGTTGGTGTTACATCCATCGC  Raphanus sativus var. oleiformis
EY933459       --> GCGGCGGCTCTTGGTGTCTCTGCAGTCGTTGTTGGTGTTACATCCATCGC  Raphanus sativus var. oleiformis
EV525045       --> ACGGCGGCTCTTGGTGTCTCTGCGGTCGTTGTTGGTGTTACATCCATCGC  Raphanus raphanistrum subsp. maritimus
EV525119       --> ACGGCGGCTCTTGGTGTCTCTGCGGTCGTTGTTGGTGTTACATCCATCGC  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN19386        --> TGGATCTTTCTTGTTTCTCTGAGGTGTGTTATTATCGTGAGAAGATCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928926       <-- TGGATCTTTCTTGTTTCTCTGAGGTGTGTTATTATCGTGAGAAG---ATT  Raphanus sativus var. oleiformis
EV529888       <-- TGGATCTTTCTTGTTTCTCTGAGGTGTGTTACTATCGTGAGAAGATCTTT  Raphanus raphanistrum subsp. maritimus
EV529944       <-- TGGATCTTTCTTGTTTCTCTGAGGTGTGTTACTATCGTGAGAAGATCTTT  Raphanus raphanistrum subsp. maritimus
FD975616       <-- TGGATCTTTCTTGTTTCTCTGAGGTGTGTTATTATCGTGAGAAG---ATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY932561       --> TGGATCTTTCTTGTTTCTCTGAGGTGTGTTATTATCGTGAGAAGAT---T  Raphanus sativus var. oleiformis
EY933459       --> TGGATCTTTCTTGTTTCTCTGAGGTGTGTTATTATCGTGAGAAGAT---T  Raphanus sativus var. oleiformis
EV525045       --> TGGATCTTTCTTGTTTCTCTGAGGTGTGTTACTATCGTGAGAAGATCTTT  Raphanus raphanistrum subsp. maritimus
EV525119       --> TGGATCTTTCTTGTTTCTCTGAGGTGTGTTACTATCGTGAGAAGATCTTT  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN19386        --> ATCTTTAATGGAGACTATTTATATGTATGGATGATTGTGATGATTATGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928926       <-- ATCTTTAATGGAGACTATTTATATGTATGGATGATTGTGATGACTATGTT
EV529888       <-- ATCTTTAATGGAGACTATTTATATGTATGGATGATTGTGATGATTATGTT
EV529944       <-- ATCTTTAATGGAGACTATTTATATGTATGGATGATTGTGATGATTATGTT
FD975616       <-- ATCTTTAATGGAGACTATTTATATGTATGGATGATTGTGATGATTATGTT
EY932561       --> ATCTTTAATGGAGACTATTTATATGTATGGATGATTGTGATGATTATGTT
EY933459       --> ATCTTTAATGGAGACTATTTATATGTATGGATGATTGTGATGACTATGTT
EV525045       --> ATCTTTAATGGAGACTATTTATATGTATGGATGATTGTGATGATTATGTT
EV525119       --> ATCTTTAATGGAGACTATTTATATGTATGGATGATTGTGATGATTATGTT

               501    -    551
UN19386        --> GTAATTTGTTTCCTCTTTATTACGAGAAACGATTGTCTTTGTAATAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928926       <-- GTAATTTGTTTCCTCTTTATTACGAGAAACAATTGTCTTTGTAATAAAAA  Raphanus sativus var. oleiformis
EV529888       <-- GTAATTTGTTTCCTCTTTATTACGAGAAACGATTGTCTTTGTAATAAAAA  Raphanus raphanistrum subsp. maritimus
EV529944       <-- GTAATTTGTTTCCTCTTTATTACGAGAAACGATTGTCTTTGTAATAAAAA  Raphanus raphanistrum subsp. maritimus
FD975616       <-- GTAATTTGTTTCCTCTTTATTACGAGAAACAATTGTC.............  Raphanus raphanistrum subsp. raphanistrum (NY)
EY932561       --> GTAATTTGTTTCCTCTTTATTACGAGAAACAATTGTCTT...........  Raphanus sativus var. oleiformis
EY933459       --> GTAATTTGTTTCCTCTTTATTACGAGAAACAATTGTCTTTGTAATAAAAA  Raphanus sativus var. oleiformis
EV525045       --> GTAATTTGTTTCCTCTTTATTACGAGAAACGATTGTCTTTGTAATAAAAA  Raphanus raphanistrum subsp. maritimus
EV525119       --> GTAATTTGTTTCCTCTTTATTACGAGAAACGATTGTCTTTGTAATAAAAA  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN19386        --> TGAAAATGACGAAACTTCCCATTAGCAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928926       <-- TGAAAATGACGAAACTTCCg..........
EV529888       <-- TGAAAATGACGAAACTTCC...........
EV529944       <-- TGAAAATGACGAAACTTCCCATTAGCAGTG
FD975616       <-- ..............................
EY932561       --> ..............................
EY933459       --> TGAAAATGACGAAACTTCCg..........
EV525045       --> TGAAAATGACGAAACTTCC...........
EV525119       --> TGAAAATGACGAAACTTCCCATTAGCAGTG