1      -     51
UN19465        --> CGCATATTGACATGCCGAGCTGGCTAAGAAACCTAAACTCTTACTTGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- ..................................................
FD936580       <-- ..................................................
EV531609       <-- ..................................................
FY451178       --> CGCATATTGACATGCCGAGCTGGCTAAGAAACCTAAACTCTTACTTGCCT
FD940782       --> ..................................................
FD560355       --> ..................................................
FD534579       --> ..................................................
EV527330       --> ..................................................

               51     -    101
UN19465        --> TCTTGTCACAGCATTTCTTGAGGTAAGTAGCAAGAGTTCGCTGCTCCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- ..................................................
FD936580       <-- ..................................................
EV531609       <-- ..................................................
FY451178       --> TCTTGTCACAGCATTTCTTGAGGTAAGTAGCAAGAGTTCGCTGCTCCAAC
FD940782       --> ..................................................
FD560355       --> ..................................................
FD534579       --> ..................................................
EV527330       --> ..................................................

               101    -    151
UN19465        --> ACTTGTTACAACCGTCAACCGAGACTGATGTATCTAAACAATGCAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- ..................................................
FD936580       <-- ..................................................
EV531609       <-- ..................................................
FY451178       --> ACTTGTTACAACCGTCAACCGAGACTGATGTATCTAAACAATGCAAAAAA
FD940782       --> ..................................................
FD560355       --> ..................................................
FD534579       --> ..................................................
EV527330       --> ..................................................

               151    -    201
UN19465        --> AAGCTGAAATATTGTCAACAGAATGAAGACAGAAACATAAACAAATCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- ..................................................
FD936580       <-- ..................................................
EV531609       <-- ..................................................
FY451178       --> AAGCTGAAATATTGTCAACAGAATGAAGACAGAAACATAAACAAATCTGG
FD940782       --> ..................................................
FD560355       --> ..................................................
FD534579       --> ..................................................
EV527330       --> ..................................................

               201    -    251
UN19465        --> AACTGCGAAAACTATGAAATATTGATTTTGGTCTCTAAAATTTTTGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- ..................................................
FD936580       <-- ..................................................
EV531609       <-- ..................................................
FY451178       --> AACTGCGAAAACTATGAAATATTGATTTTGGTCTCTAAAATTTTTGAAAG
FD940782       --> ..................................................
FD560355       --> ..................................................
FD534579       --> ..................................................
EV527330       --> ..................................................

               251    -    301
UN19465        --> GATTTTATATAGATAAGTGTCTCTAAAATTATTTTTAAAAAGTTTTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- ..................................................
FD936580       <-- ..................................................
EV531609       <-- ..................................................
FY451178       --> GATTTTATATAGATAAGTGTCTCTAAAATTATTTTTAAAAAGTTTTTTTT
FD940782       --> ..................................................
FD560355       --> ..................................................
FD534579       --> ..................................................
EV527330       --> ..................................................

               301    -    351
UN19465        --> TTTACAAAAGTTAAAAAAAAAAACATTTTAGGCCCCTAAATTTTAGATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- ..................................................
FD936580       <-- ..................................................
EV531609       <-- ..................................................
FY451178       --> TTTACAAAAGTTAAAAAAAAAAACATTTTAGGCCCCTAAATTTTAGATTT
FD940782       --> ..................................................
FD560355       --> ..................................................
FD534579       --> ..................................................
EV527330       --> ..................................................

               351    -    401
UN19465        --> GGCCAAAGCTTTGCACTGTTAGAAGAAAAACAAATCTAATAGATTTTACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- ..................................................
FD936580       <-- ..................................................
EV531609       <-- ..................................................
FY451178       --> GGCCAAAGCTTTGCACTGTTAGAAGAAAAACAAATCTAATAGATTTTACG
FD940782       --> ..................................................
FD560355       --> ..................................................
FD534579       --> ..................................................
EV527330       --> ..................................................

               401    -    451
UN19465        --> TTGTAAACCTTCAAGTTTATTTTTATATTTTGTTGGAATTATCAAATAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- ..................................................
FD936580       <-- ..................................................
EV531609       <-- ..................................................
FY451178       --> TTGTAAACCTTCAAGTTTATTTTTATATTTTGTTGGAATTATCAAATAAG
FD940782       --> ..................................................
FD560355       --> ..................................................
FD534579       --> ..................................................
EV527330       --> ..................................................

               451    -    501
UN19465        --> CCCCTATTCTTTGTTGTCTGTTTCTTTCTTAACCCGAATAATTTAGTCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- ..................................................
FD936580       <-- ..................................................
EV531609       <-- ..................................................
FY451178       --> CCCCTATTCTTTGTTGTCTGTTTCTTTCTTAACCCGAATAATTTAGTCGC
FD940782       --> ..................................................
FD560355       --> ..................................................
FD534579       --> ..................................................
EV527330       --> ..................................................

               501    -    551
UN19465        --> TTCGACGAGAACTCACCTTTAGAAGCTTGAACCCTAAACCCC-TCTCCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- ......................................aCCC-TCTCCCG
FD936580       <-- ..................................................
EV531609       <-- ..................................................
FY451178       --> TTCGACGAGAACTCACCTTTAGAAGCTTGAACCCTAAACCCC-TCTCCCG
FD940782       --> .............ggacaTTAGAAGCTTGAACCCTAAACCCCCTCTCCCG
FD560355       --> ..................ggAGAAGCTTGAACCCTAAACCCC-TCTCCCG
FD534579       --> ..................................................
EV527330       --> ..................................................

               551    -    601
UN19465        --> ATCCAGTTTCAG-----AATCCGGACCTGGTTCGGTGCCTTTGTC-GAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- ATCCAGTTTCAG-----AATCCGGACCTGGTTCGGTGCCTTTGTC-GAGA
FD936580       <-- ..........................................gtcttAGA
EV531609       <-- ..................................................
FY451178       --> ATCCAGTTTCAGCGTAGAATCCGGACCTGGTTCGGTGCCTTTGTC-GAGA
FD940782       --> ATCCAGTTTCAG-----AATCCGGACCTGGTTCAGTGCCTTTGTCTTAGA
FD560355       --> ATCCAGTTTCAG-----AATCCGGACCTGGTTCGGTGCCTTTGTC-GAGA
FD534579       --> ..................................................
EV527330       --> ..................................................

               601    -    651
UN19465        --> CATGAGATGGCTGAGATATCTAAACCAATGGCGTGGAACCGCGAAGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- CATGAGATGGCTGAGATATCTAAACCAATGGCGTGGAACCGCGAAGGAAG
FD936580       <-- CATGAGATGGCTGAGATATCTAAACCAATGGCGTGGAACCGCGAAGGAGG
EV531609       <-- ..................................................
FY451178       --> CATGAGATGGCTGAGATATCTAAACCAATGGCGTGGAACCGCGAAGGAAG
FD940782       --> CATGAGATGGCTGAGATATCTAAACCAATGGCGTGGAACCGCGAAGGAGG
FD560355       --> CATGAGATGGCTGAGATATCTAAACCAATGGCGTGGAACCGCGAAGGAAG
FD534579       --> ..................................................
EV527330       --> ..................................................

               651    -    701
UN19465        --> CATTCGAGCAAGTATCAATTGTAGCCAAGTTTCTCTGTTTGATCCACGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- CATTCGAGCAAGTATCAATTGTAGCCAAGTTTCCCTGTTTGATCCACGTC
FD936580       <-- CATTCGAGCAAGTATCAATCGTAGCCAAGCTTCTCTGTTTGATCCACGTC
EV531609       <-- ..................................................
FY451178       --> CATTCGAGCAAGTATCAATTGTAGCCAAGTTTCTCTGTTTGATCCACGTC
FD940782       --> CATTCGAGCAAGTATCAATCGTAGCCAAGCTTCTCTGTTTGATCCACGTC
FD560355       --> CATTCGAGCAAGTATCAATTGTAGCCAAGTTTCCCTGTTTGATCCACGTC
FD534579       --> ................................................gC
EV527330       --> ..................................................

               701    -    751
UN19465        --> ACCGATCGTTACATAATCTCATCCACTCATGTTCAAGGTCCTAGCATGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- ACCGATCGTTACATAATCTCATCAACCCATGTTCAAGGTCCTAGCATGCT  Raphanus raphanistrum subsp. landra
FD936580       <-- ACCGATCGTTACATAATCTCATCCACTCACGTTCAAGGTCCTAGCATGCT  Raphanus sativus var. oleiformis
EV531609       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY451178       --> ACCGATCGTTACATAATCTCATCAACCCATGTTCAAGGTCCTAGCATGCT  Raphanus sativus cv GSK3-1
FD940782       --> ACCGATCGTTACATAATCTCATCCACTCACGTTCAAGGTCCTAGCATGCT  Raphanus sativus var. oleiformis
FD560355       --> ACCGATCGTTACATAATCTCATCAACCCATGTTCAAGGTCCTAGCATGCT  Raphanus raphanistrum subsp. landra
FD534579       --> ACCGACCGTTACATAATCTCATCCACTCACGTTCAAGGTCCTAGCATGCT  Raphanus raphanistrum subsp. maritimus
EV527330       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN19465        --> TCCGACGCTTAACCTCACGGGGGATGTCATTTTAGCGGAACATTTATCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- TCCGACGCTTAACCTCACGGGGGATGTCATTTTAGCGGAACATTTATCGC
FD936580       <-- TCCGACGCTTAACCTCACGGGGGATGTCATTTTAGCGGAACATTTATCGC
EV531609       <-- ...................................gGGAACATTTATCGC
FY451178       --> TCCGACGCTTAACCTCACGGGGGATGTCATTTTAGCGGAACATTTATCGC
FD940782       --> TCCGACGCTTAACCTCACGGGGGATGTCATTTTAGCGGAACATTTATCGC
FD560355       --> TCCGACGCTTAACCTCACGGGGGATGTCATTTTAGCGGAACATTTATCGC
FD534579       --> TCCGACGCTTAACCTCACGGGGGATGTCATTTTAGCGGAACATTTATCGC
EV527330       --> ...................................gGGAACATTTATCGC

               801    -    851
UN19465        --> ACCGGTTCGGTAAGATTGGTCTCGGTGACATTGTGTTGGTTCGATCTCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- ACCGGTTCGGTAAGATTGGTCTCGGTGACATTGTGTTGGTTCGATCTCCG
FD936580       <-- ACCGGTTCGGTAAGATTGGTCTCGGTGACATTGTGTTGGTTCGATCTCCG
EV531609       <-- GCCGGTTCGGTAAGATTGGTCTCGGTGACATTGTGTTGGTTCGATCTCCG
FY451178       --> ACCGGTTCGGTAAGATTGGTCTCGGTGACATTGTGTTGGTTCGATCTCCG
FD940782       --> ACCGGTTCGGTAAGATTGGTCTCGGTGACATTGTGTTGGTTCGATCTCCG
FD560355       --> ACCGGTTCGGTAAGATTGGTCTCGGTGACATTGTGTTGGTTCGATCTCCG
FD534579       --> ACCGGTTCGGTAAGATTGGTCTCGGTGACATTGTGTTGGTTCGATCTCCG
EV527330       --> GCCGGTTCGGTAAGATTGGTCTCGGTGACATTGTGTTGGTTCGATCTCCG

               851    -    901
UN19465        --> ACTGACCCGACTAGGATGGTGACGAAGAGGATCTTGGGTTTAGAAGGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- ACTGACCCGACTAGGATGGTGACGAAGAGGATCTTGGGTTTAGAAGGGCA
FD936580       <-- ACTGACCCGACTAGGATGGTGACGAAGAGGATCTTGGGTTTAGAAGGGCA
EV531609       <-- ACTGACCCGACTAGGATGGTGACGAAGAGGATCTTGGGTTTAGAAGGGCA
FY451178       --> ACTGACCCGAC.......................................
FD940782       --> ACTGACCCGACTAGGATGGTGACGAAGAGGATCTTGGGTTTAGAAGGGCA
FD560355       --> ACTGACCCGACTAGGATGGTGACGAAGAGGATCTTGGGTTTAGAAGGGCA
FD534579       --> ACTGACCCGACTAGGATGGTGACGAAGAGGATCTTGGGTTTAGAAGGGCA
EV527330       --> ACTGACCCGACTAGGATGGTGACGAAGAGGATCTTGGGTTTAGAAGGGCA

               901    -    951
UN19465        --> TAGACTCTCTTTCTCTGCTGACCCATTGCTTGGTGATAGCTCCGTCAGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- TAGACTCTCTTTTTCTGCTGACCCTTTGGTTGGTGATAGCTCCGTCAGCG
FD936580       <-- TAGACTCTCTTTTTCTGCTGACCCATTGCTTGGTGATAGCTCCGTCAGCG
EV531609       <-- TAGACTCTCTTTTTTTGCTGACCCATTGCTTGGTGATAGCTCCGTCAGCG
FY451178       --> ..................................................
FD940782       --> TAGACTCTCTTTCTCTGCTGACCCATTGCTTGGTGATAGCTCCGTCAGCG
FD560355       --> TAGACTCTCTTTCTCTGCTGACCCTTTGGTTGGTGATAGCTCCGTCAGCG
FD534579       --> TAGACTCTCTTTCTCTGCTGACCCATTGCTTGGTGATAGCTCCGTCAGCG
EV527330       --> TAGACTCTCTTTCTCTGCTGACCCATTGCTTGGTGATAGCTCCGTCAGCG

               951    -   1001
UN19465        --> TTGTGGTTCCAAAAGGCCATGTTTGGATTCAGGGAGATAACTTGTATGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- TTGTGGTTCCAAAAGGCCATGTTTGGATTCAGGGAGATAACTTGTATGCT
FD936580       <-- TTGTGGTTCCAAAAGGCCATGTTTGGATTCAGGGAGATAACTTGTATGCT
EV531609       <-- TTGTGGTTCCAAAAGGCCATGTTTGGATTCAGGGAGATAACTTGTATGCT
FY451178       --> ..................................................
FD940782       --> TTGTGGTTCCAAAAGGCCATGTTTGGATTCAGGGAGATAACTTGTATGCT
FD560355       --> TTGTGGTTCCAAAAGGCCATGTTTGGATTCAGGGAGATAACTTGTATGCT
FD534579       --> TTGTGGTTCCAAAAGGCCATGTTTGGATTCAGGGAGATAACTTGTATGCT
EV527330       --> TTGTGGTTCCAAAAGGCCATGTTTGGATTCAGGGAGATAACTTGTATGCT

               1001   -   1051
UN19465        --> TCAACTGATTCGCGTAATTTCGGACCTGTACCTTACAATCTCATCGAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- TCAACTGATTCGCGTAATTTCGGACCTGTACCTTACAATCTCATCGAAGG  Raphanus raphanistrum subsp. landra
FD936580       <-- TCAACTGATTCGCGTAATTTCGGACCTGTACCTTACAATCTCATCGAAGG  Raphanus sativus var. oleiformis
EV531609       <-- TCAACTGATTCGCGCAATTTTGGACCTGTACCTTACAATCTCATCGAAGG  Raphanus raphanistrum subsp. maritimus
FY451178       --> ..................................................  Raphanus sativus cv GSK3-1
FD940782       --> TCAACTGATTCGCGTAATTTCGGACCTGTACCTTACAATCTCATCGAAGG  Raphanus sativus var. oleiformis
FD560355       --> TCAACTGATTCGCGTAATTTCGGACCTGTACCTTACAATCTCATCGAAGG  Raphanus raphanistrum subsp. landra
FD534579       --> TCAACTGATTCGCGCAATTTTGGACCTGTACCTTACAATCTCATCGAAGG  Raphanus raphanistrum subsp. maritimus
EV527330       --> TCAACTGATTCGCGCAATTTTGGACCTGTACCTTACAATCTCATCGAAGG  Raphanus raphanistrum subsp. maritimus

               1051   -   1101
UN19465        --> AAAAGCTCTTCTTCGTGTCTGGCCACCACGGTTCTTTGGGTCATTGAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- AAAAGCTCTTCTTCGTGTCTGGCCACCACGGTTCTTTGGGTCATTGAGGT
FD936580       <-- CAAAGCTCTTCTTCGTGTCTGGCCACCACGGTTCTTTGGGTCATTGAGGT
EV531609       <-- AAAAGCTTTTTTTCGTGTCTGGCCACCACGGTTCTTTGGGTCATTGAGGT
FY451178       --> ..................................................
FD940782       --> CAAAGCTCTTCTTCGTGTCTGGCCACCACGGTTCTTTGGGTCATTGAGGT
FD560355       --> AAAAGCTCTTCTTCGTGTCTGGCCACCACGGTTCTTTGGGTCATTGAGGT
FD534579       --> AAAAGCTCTTCTTCGTGTCTGGCCACCACGGTTCTTTGGGTCATTGAGGT
EV527330       --> AAAAGCTCTTCTTCGTGTCTGGCCACCACGGTTCTTTGGGTCATTGAGGT

               1101   -   1151
UN19465        --> GACGATCACAATCCGGCTTGTTTCCCTTTCAGTTGTTTTTGCAGTAGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- GACGATCACAATCCGGGTTGTTTCCCTTTCAGTTGTTTTTGCAGTAGGAT
FD936580       <-- GACGATCACAATCCGGCTTGTTTCCCTTTCAGTTGTTTTTGCAGTAGGAT
EV531609       <-- GACGATCACAATCCGGCTTGTTTCCCTTTCAGTTGTTTTTGCAGTAGGAT
FY451178       --> ..................................................
FD940782       --> GACGATCACAATCCGGCTTGTTTCCCTTTCAGTTGTTTTTGCAGTAGGAT
FD560355       --> GACGATCACAATCCGGGTTGTTTCCCTTTCAGTTGTTTTTGCAGTAGGAT
FD534579       --> GACGATCACAATCCGGCTTGTTTCCCTTTCAGTTGTTTTTGCAGTAGGAT
EV527330       --> GACGATCACAATCCGGCTTGTTTCCCTTTCAGTTGTTTTTGCAGTAGGAT

               1151   -   1201
UN19465        --> GTGTGTAACTCCAGCGGTTTTATTGCAATGTTGATCATACTCATTAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- GTGTGTAACTCCAGCGGTTTTATTGCAATGTTGATCATACTCATTAGAGT  Raphanus raphanistrum subsp. landra
FD936580       <-- GTGTGTAACTCCAGCGGTTTTATTGCAATGTTGATCATACTCATTAGAGT  Raphanus sativus var. oleiformis
EV531609       <-- GTGTGCAACTCCAGCGGTTTTATTGCAATGTTGATCATACTCATTAGAGT  Raphanus raphanistrum subsp. maritimus
FY451178       --> ..................................................  Raphanus sativus cv GSK3-1
FD940782       --> GTGTGTAACTCCAGCGGTTT-ATTGCAATGTTGATCATACTCATTAGAGT  Raphanus sativus var. oleiformis
FD560355       --> GTGTGTAACTCCAGCGGTTTTATTGCAATGTTGATCATACTCATTAGAGT  Raphanus raphanistrum subsp. landra
FD534579       --> GTGTGCAACTCCAGCGGTTTTATTGCAATGTTGATCATACTCATTAGAGT  Raphanus raphanistrum subsp. maritimus
EV527330       --> GTGTGCAACTCCAGCGGTTTTATTGCAATGTTGATCATACTCATTAGAGT  Raphanus raphanistrum subsp. maritimus

               1201   -   1251
UN19465        --> AATGTTATGTATCAATCGGATTTAGATAAAGCCACAGAAGTGGGATAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- AATGTTATGTATCAATCGGATTTAGATAAAGCCACAGAAGTGGGATAAAT
FD936580       <-- AATGTTATGTATCAATCGGATTTAGATAAAGCCACAGAAGTGGGATAAAT
EV531609       <-- AATGTTATGTATCAATCGGATTTAGATAAAGCCACAGAAGTGGGATAAAT
FY451178       --> ..................................................
FD940782       --> AATGTTATGTATCAATCGGATTTAGATAAAGCCACAGAAGTGGG......
FD560355       --> AATGTTATGTATCAATCGGATTTAGATAAAGCCACAGAAGTGGGATAAAT
FD534579       --> AATGTTATGTATCAATCGGATTTAGATAAAGCCACAGAAGTGGGATAAAT
EV527330       --> AATGTTATGTATCAATCGGATTTAGATAAAGCCACAGAAGTGGGATAAAT

               1251   -   1301
UN19465        --> ATTAGAGGAAGCCATGGACCTGACTTTGTTTTATACCTGAAGCTACGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- ATTAGAGGAAGCCATGGACCTGCCTTTGTTTTATACCTGAAGCTACGTTA
FD936580       <-- ATTAGAGGAAGCCATGGACCTGACTTTGTTTTATACCTGAAGCTACGTTA
EV531609       <-- ATTAGAGGAAGCCATGGACCTGACTTTGTTTTATACCTGAAGCTACGTTA
FY451178       --> ..................................................
FD940782       --> ..................................................
FD560355       --> ATTAGAGGA-GCCATGGACCTGCCTTTGTTT...................
FD534579       --> ATTAGAGGAAGCCATGG.................................
EV527330       --> ATTAGAGGAAGCCATGGACCTGACTTTGTTTTATACCTGAAGCTACGTTA

               1301   -   1351
UN19465        --> AGATTCATTTTGTAAGATCTAAAAAGTTGGTGAGATTTTGGTTGATAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD555929       <-- AGATTCATTTTGTAAGATCTAAAAAGTTGGT...................
FD936580       <-- AGATTCATTTTGTAAGATCT..............................
EV531609       <-- AGATTCATTTTGTAAGATCTAAAAAGTTGGTGAGATTTTGGTTGATAATT
FY451178       --> ..................................................
FD940782       --> ..................................................
FD560355       --> ..................................................
FD534579       --> ..................................................
EV527330       --> AGATTCATTTTGTAAGATCTAAAAAGTTGGTGAGATTTTGGTTGATAATT

               1351   -   1401
UN19465        --> GGCATTGAGCC
                   ~~~~~~~~~~~
FD555929       <-- ...........
FD936580       <-- ...........
EV531609       <-- GGCATTGAGCC
FY451178       --> ...........
FD940782       --> ...........
FD560355       --> ...........
FD534579       --> ...........
EV527330       --> GGCATTGAGCC