1      -     51
UN19513        --> GCGAGAAATGTTGTTTTTTATTGGCGAACGCGTCAGTTAAAATAATGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- .................................................A
EV567956       <-- ..................................................
EV568983       <-- ..................................................
EY913738       <-- ..................................................
EX764699       <-- ..................................................
EY909921       --> GCGAGAAATGTTGTTTTTTATTGGCGAACGCGTCAGTTAAAATAATGATA
EY903863       --> ..................................AGTTAAAATAATGATA
EV572786       --> ..................................................
EV573592       --> ..................................................
EX768568       --> ..................................................

               51     -    101
UN19513        --> TTGATTTAAGTACATTGATAGGAAACGGTCATTTTAAAAATCAAAGTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- TTGATTTAAGTACATTGATAGGAAACGGTCATT--TAAAATCAAAGTAAC
EV567956       <-- ..................................................
EV568983       <-- ..................................................
EY913738       <-- ..................................................
EX764699       <-- ..................................................
EY909921       --> TTGATTTAAGTA-ATTGATAGGAAACGGTCATTTTAAAAATCAAAGTAAC
EY903863       --> TTGATTTAAGTACATTGATAGGAAACGGTCATTTTAAAAATCAAAGTAAC
EV572786       --> ................gtTAGGAAACGGTCATTTTAAAAATCAAAGTAAC
EV573592       --> ................gtTAGGAAACGGTCATTTTAAAAATCAAAGTAAC
EX768568       --> .........................................cgAAGTAAC

               101    -    151
UN19513        --> AAATATTTTATTTGTTCATAAACGAAATGAAATTGAGACATATGAACATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- AAATATTTTATTTGTTCATAAACGAAATGAAATTGAGACATATGAACATA
EV567956       <-- ..............TTCATAAACGAAATGAAATTGAGACATATGAACATA
EV568983       <-- ..............................AATTGAGACATATGAACATA
EY913738       <-- ......................................CATATGAACATA
EX764699       <-- ..................................................
EY909921       --> AAGTATTTTATTTGTTCATAAACGAAATGAAATTGAGACATATGAACATA
EY903863       --> AAATATTTTATTTGTTCATAAACGAAATGAAATTGAGACATATGAACATA
EV572786       --> AAATATTTTATTTGTTCATAAACGAAATGAAATTGAGACATATGAACATA
EV573592       --> AAATATTTTATTTGTTCATAAACGAAATGAAATTGAGACATATGAACATA
EX768568       --> AAATATTTTATTTGTTCATAAACGAAATGAAACTGAGAAATATGAACATA

               151    -    201
UN19513        --> AACATATAAACTCAAATACGAGCATAAACATATAAAACGTCGTAATATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- AACATATAAACTCAAATACGAGCATAAACATATAAAACGTCGTAATATGT
EV567956       <-- AACATATAAACTCAAATACGAGCATAAACATATAAAACGTCGTAATATGT
EV568983       <-- AACATATAAACTCAAATACGAGCATAAACATATAAAACGTCGTAATATGT
EY913738       <-- AACATATAAACTCAAATACGAGCATAAACATATAAAACGTCGTAATATGT
EX764699       <-- ..................................................
EY909921       --> AACATATAAACTCAAATACGAGCATAAACATATAAAACGTCGTAATATGT
EY903863       --> AACATATAAACTCAAATACGAGCATAAACATATAAAACGTCGTAATATGT
EV572786       --> AACATATAAACTCAAATACGAGCATAAACATATAAAACGTCGTAATATGT
EV573592       --> AACATATAAACTCAAATACGAGCATAAACATATAAAACGTCGTAATATGT
EX768568       --> AACATATAAACTCAAATACGAGCATAAACATATAAAACGTCGTAATATGT

               201    -    251
UN19513        --> AAACCTCTCAAATATCTATGAAATTTGACCGCAGTTGTGGATCACAGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- AAACCTCTCAAATATCTATGAAATTTGACCGCAGTTGTGTATCACAGCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567956       <-- AAACCTCTCAAATATCTATGAAATTTGACCGCAGTTGTGGATCACCGCAA  Raphanus raphanistrum subsp. landra
EV568983       <-- AAACCTCTCAAATATCTATGAAATTTGACCGCAGTTGTGGATCACCGCAA  Raphanus raphanistrum subsp. landra
EY913738       <-- AAAC-TCTCAAATATCTATGAAATT-GACCGCAGTTGTGGATCACAGCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX764699       <-- .................................GTTGTGGATCACAGCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909921       --> AAACCTCTCAAATATCTATGAAATTTGACCGCAGTTGTGGATCACAGCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903863       --> AAACCTCTCAAATATCTATGAAATTTGACCGCAGTTGTGTATCACAGCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572786       --> AAACCTCTCAAATATCTATGAAATTTGACCGCAGTTGTGGATCACCGCAA  Raphanus raphanistrum subsp. landra
EV573592       --> AAACCTCTCAAATATCTATGAAATTTGACCGCAGTTGTGGATCACCGCAA  Raphanus raphanistrum subsp. landra
EX768568       --> AAACCTCTCAAATATCTATGAAATTTGACCGCAGTTGTGGATCACAGCAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN19513        --> CGGGTACGGAAGTTTCCGTGCTCAAAGCCATAATGCTCGTGACTATATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- CGGGTACGGAAGTTTCCGTGCTCAAAGCCATAATGCTCGTGACTATATCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567956       <-- CGGGTACGGAAGTTTCCGTGCTTAAAGCCATAATGCTCGTGACTATATCC  Raphanus raphanistrum subsp. landra
EV568983       <-- CGGGTACGGAAGTTTCCGTGCTTAAAGCCATAATGCTCGTGACTATATCC  Raphanus raphanistrum subsp. landra
EY913738       <-- CGGGTACGGAAGTTTCCGTGCTCAAAGCCATAATGCTCGTGACTATATCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX764699       <-- CGGGTACGGAAGTTTCCGTGCTCAAAGCCATAATGCTCGTGACTATATCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909921       --> CGGGTACGGAAGTTTCCGTGCTCAAAGCCATAATGCTCGTGACTATATCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903863       --> CGGGTACGGAAGTTTCCGTGCTCAAAGCCATAATGCTCGTGACTATATCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572786       --> CGGGTACGGAAGTTTCCGTGCTTAAAGCCATAATGCTCGTGACTATATCC  Raphanus raphanistrum subsp. landra
EV573592       --> CGGGTACGGAAGTTTCCGTGCTTAAAGCCATAATGCTCGTGACTATATCC  Raphanus raphanistrum subsp. landra
EX768568       --> CGGGTACGGAAGTTTCCGTGCTCAAAGCCATAATGCTCGTGACTATATCC  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN19513        --> -ATTCCTTGAACGACTTGGCCGAACACAACACACTCGTCATCCAGATCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- -ATTCCTTGAACGACTTGGCCGAACACAACACACTCGTCATCCAGATCCG
EV567956       <-- CATTCCTTGAACGACTTGGCCGAACACAACACACTCGTCATCCAGATCCG
EV568983       <-- -ATTCCTTGAACGACTTGGCCGAACACAACACACTCGTCATCCAGATCCG
EY913738       <-- -ATTCCTTGAACGACTTGGCCGAACACAACACACTCGTCATCCAGATCCG
EX764699       <-- -ATTCCTTGAACGACTTGGCCGAACACAACACACTCGTCATCCAGATCCG
EY909921       --> -ATTCCTTGAACGACTTGGCCGAACACAACACACTCGTCATCCAGATCCG
EY903863       --> -ATTCCTTGAACGACTTGGCCGAACACAACACACTCGTCATCCAGATCCG
EV572786       --> -ATTCCTTGAACGACTTGGCCGAACACAACACACTCGTCATCCAGATCCG
EV573592       --> -ATTCCTTGAACGACTTGGCCGAACACAACACACTCGTCATCCAGATCCG
EX768568       --> -ATTCCTTGAACGACTTGGCCGAACACAACACACTCGTCATCCAGATCCG

               351    -    401
UN19513        --> GGTTCGCCTGCGCGTGGATCATGAACTGAGATCCGGTGCTGTTTCGACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- GGTTCGCCTGCGCGTGGATCATGAACTGAGATCCGGTGCTGTTTCGACCA
EV567956       <-- GGTTCGCCTGCGCGTGGATCATGAACTGAGATCCGGTGCTGTTTCGACCA
EV568983       <-- GGTTCGCCTGCGCGTGGATCATGAACTGAGATCCGGTGCTGTTTCGACCA
EY913738       <-- GGTTCGCCTGCGCGTGGATCATGAACTGAGATCCGGTGCTGTTTCGACCA
EX764699       <-- GGTTCGCCTGCGCGTGGATCATGAACTGAGATCCGGTGCTGTTTCGACCA
EY909921       --> GGTTCGCCTGCGCGTGGATCATGAACTGAGATCCGGTGCTGTTTCGACCA
EY903863       --> GGTTCGCCTGCGCGTGGATCATGAACTGAGATCCGGTGCTGTTTCGACCA
EV572786       --> GGTTCGCCTGCGCGTGGATCATGAACTGAGATCCGGTGCTGTTTCGACCA
EV573592       --> GGTTCGCCTGCGCGTGGATCATGAACTGAGATCCGGTGCTGTTTCGACCA
EX768568       --> GGTTCGCCTGCGCGTGGATCATGAACTGAGATCCGGTGCTGTTTCGACCA

               401    -    451
UN19513        --> CGGTTCCACATGGAGAGGATACCTGGACCGGTGTGCTTCTTGATGAAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- CGGCTCCACATGGAGAGGATACCTGGACCGGTGTGCTTCTTGATGAAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567956       <-- CGGTTCCACATGGAGAGGATACCTGGACCGGTGTGCTTCTTGATGAAGTT  Raphanus raphanistrum subsp. landra
EV568983       <-- CGGTTCCACATGGAGAGGATACCTGGACCGGTGTGCTTCTTGATGAAGTT  Raphanus raphanistrum subsp. landra
EY913738       <-- CGGTTCCACATGGAGAGTATACCTGGACCGGTGTGCTTCTTGATGAAGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX764699       <-- CGGTTCAACATGGAGAGTATACCTGGACCGGTGTGCTTCTTGATGAAGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909921       --> CGGTTCCACATGGAGAGTATACCTGGACCGGTGTGCTTCTTGATGAAGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903863       --> CGGCTCCACATGGAGAGGATACCTGGACCGGTGTGCTTCTTGATGAAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572786       --> CGGTTCCACATGGAGAGGATACCTGGACCGGTGTGCTTCTTGATGAAGTT  Raphanus raphanistrum subsp. landra
EV573592       --> CGGTTCCACATGGAGAGGATACCTGGACCGGTGTGCTTCTTGATGAAGTT  Raphanus raphanistrum subsp. landra
EX768568       --> CGGTTCAACATGGAGAGTATACCTGGACCGGTGTGCTTCTTGATGAAGTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN19513        --> CTCAACCTCGAAAAACCTACTGTCGTAGATACATTCGCCTCCGTTTCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- CTCAACCTCGAAAAACCTACTGTCGTAGATACATTCGCCTCCGTTTCCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567956       <-- CTCAACCTCGAAAAACCTACTGTCGTAGATACATTCGCCTCCGTTACCTT  Raphanus raphanistrum subsp. landra
EV568983       <-- CTCAACCTCGAAAAACCTACTGTCGTAGATACATTCGCCTCCGTTACCTT  Raphanus raphanistrum subsp. landra
EY913738       <-- CTCAACCTCGAAAAACCTACTGTCGTAGATACATTCGCCTCCGTTTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX764699       <-- CTCAACCTCGAAAAACCTACTGTCGTAGATACATTCGCCTCCGTTTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909921       --> CTCAACCTCGAAAAACCTACTGTCGTAAATACATTCGCCTCCGTTTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903863       --> CTCAACCTCGAAAAACCTACTGTCGTAGATACATTCGCCTCCGTTTCCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572786       --> CTCAACCTCGAAAAACCTACTGTCGTAGATACATTCGCCTCCGTTACCTT  Raphanus raphanistrum subsp. landra
EV573592       --> CTCAACCTCGAAAAACCTACTGTCGTAGATACATTCGCCTCCGTTACCTT  Raphanus raphanistrum subsp. landra
EX768568       --> CTCAACCTCGAAAAACCTACTGTCGTAAATACATTCGCCTCCGTTTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN19513        --> TCCCTCCGTCAATGATATCTCCTCCTTGGATCATATAACCTGGGTCAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- TCCCTCCGTCAATGATATCTCCTCCTTGGATCATATAACCTGGGTCAACA
EV567956       <-- TCCCTCCGTCAATGATATCTCCTCCTTGGATCATATAACCTGGGTCAACA
EV568983       <-- TCCCTCCGTCAATGATATCTCCTCCTTGGATCATATAACCTGGGTCAACA
EY913738       <-- TCCCTCCGTCAATGATATCTCCTCCTTGGATCATATAACCTGGGTCAACA
EX764699       <-- TCCCTCCGTCAATGATATCTCCTCCTTGGATCATATAACCTGGGTCAACA
EY909921       --> TCCCTCCGTCAATGATATCTCCTCCTTGGATCATATAACCTGGGTCAACA
EY903863       --> TCCCTCCGTCAATGATATCTCCTCCTTGGATCATATAACCTGGGTCAACA
EV572786       --> TCCCTCCGTCAATGATATCTCCTCCTTGGATCATATAACCTGGGTCAACA
EV573592       --> TCCCTCCGTCAATGATATCTCCTCCTTGGATCATATAACCTGGGTCAACA
EX768568       --> TCCCTCCGTCAATGATATCTCCTCCTTGGATCATATAACCTGGGTCAACA

               551    -    601
UN19513        --> TGGTGGATGATCGATCCTTTGTAATGGAGTGGCTTACCAAGCTTCCCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- TGGTGGATGATCGATCCTTTGTAATGGAGTGGCTTACCAAGCTTCCCCAT
EV567956       <-- TGGTGGATGATCGATCCTTTGTAATGGAGTGGCTTACCAAGCTTCCCCAT
EV568983       <-- TGGTGGATGATCGATCCTTTGTAATGGAGTGGCTTACCAAGCTTCCCCAT
EY913738       <-- TGGTGGATGATCGATCCTTTGTAATGGAGTGGCTTACCAAGCTTCCCCAT
EX764699       <-- TGGTGGATGATCGATCCTTTGTAATGGAGTGGCTTACCAAGCTTCCCCAT
EY909921       --> TGGTGGATGATCGATCCTTTGTAATGGAGTGGCTTACCAAGCTTCCCCAT
EY903863       --> TGGTGGATGATCGATCCTTTGTAATGGAGTGGCTTACCAAGCTTCCCCAT
EV572786       --> TGGTGGATGATCGATCCTTTGTAATGGAGTGGCTTACCAAGCTTCCCCAT
EV573592       --> TGGTGGATGATCGATCCTTTGTAATGGAGTGGCTTACCAAGCTTCCCCAT
EX768568       --> TGGTGGATGATCGATCCTTTGTAATGGAGTGGCTTACCAAGCTTCCCCAT

               601    -    651
UN19513        --> GCCTTTCTCGCCTGTACAGAGGGCGCGAAAGTTCTCTGCCGTCCGTGGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- GCCTTTCTCGCCTGTACAGAGGGCGCGAAAGTTCTCTGCCGTCCGTGGGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567956       <-- GCCTTTCTCACCGGTACAGAGGGCGCGAAAGTTCTCTGCCGTCCGTGGGG  Raphanus raphanistrum subsp. landra
EV568983       <-- GCCTTTCTCACCGGTACAGAGGGCGCGAAAGTTCTCTGCCGTCCGTGGGG  Raphanus raphanistrum subsp. landra
EY913738       <-- GCCTTTCTCGCCTGTACAGAGGGCGCGAAAGTTCTCTGCCGTCCGTGGGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX764699       <-- GCCTTTCTCGCCTGTACAGAGGGCGCGAAAGTTCTCTGCCGTCCGTGGGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909921       --> GCCTTTCTCGCCTGTACAGAGGGCGCGAAAGTTCTCTGCCGTCCGTGGGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903863       --> GCCTTT............................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572786       --> GCCTTTCTCACCGGTACAGAGGGCGCGAAAGTTCTCTGCCGTCCGTGGGG  Raphanus raphanistrum subsp. landra
EV573592       --> GCCTTTCTCACCGGTACAGAGGGCGCGAAAGTTCTCTGCCGTCCGTGGGG  Raphanus raphanistrum subsp. landra
EX768568       --> GCCTTTCTCGCCTGTACAGAGGGCGCGAAAGTTCTCTGCCGTCCGTGGGG  Raphanus raphanistrum subsp. raphanistrum (NY)

               651    -    701
UN19513        --> TCGTGTCGGCAAAGAGTTCCATTATGATCATACCAGCTGGTTTGCCGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- TCGTGTCGGCAAAGAGTTCCATTATGATCATACCAGCTGGTTTGCCGTCC
EV567956       <-- TCGTGTCGGCAAAGAGTTCCATTATGATCATACCAGCTGGTTTGCCGTCC
EV568983       <-- TCGTGTCGGCAAAGAGTTCCATTATGATCATACCAGCTGGTTTGCCGTCC
EY913738       <-- TCGTGTCGGCAAAGAGTTCCATTATGATCATACCAGCTGGTTTGCCGTCC
EX764699       <-- TCGTGTCGGCAAAGAGTTCCATTATGATCATACCAGCTGGTTTGCCGTCC
EY909921       --> TCGTG.............................................
EY903863       --> ..................................................
EV572786       --> TCGTGTCGGCAAAGAGTTCCATTATGATCATACCAGCTGGTTTGCCGTCC
EV573592       --> TCGTGTCGGCAAAGAGTTCCATTATGATCATACCAGCTGGTTTGCCGTCC
EX768568       --> TCGTGTCGGCAAAGAGTTCCATTATGATCATACCAGCTGGTTTGCCGTCC

               701    -    751
UN19513        --> ACGGTCATATAAAAGTAAACCTTAGGGTTAGCCCGAGGAGGTACAGGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- ACGGTCATATAAAAGTAAACCTTAGGGTTAGCCCGAGGAGGTACAGGGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567956       <-- ACGGTCATATAAAAGTAAACCGTAGGGTTAGCCCGAGGAGGTACAGGGGT  Raphanus raphanistrum subsp. landra
EV568983       <-- ACGGTCATATAAAAGTAAACCGTAGGGTTAGCCCGAGGAGGTACAGGGGT  Raphanus raphanistrum subsp. landra
EY913738       <-- ACGGTCATATAAAAGTAAACCTTAGGGTTAGCCCGAGGAGGTACAGGGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX764699       <-- ACGGTCATATAAAAGTAAACCTTAGGGTTAGCCCGAGGAGGTACAGGGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909921       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903863       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572786       --> ACGGTCATATAAAAGTAAACCGTAGGGTTAGCCCGAGGAGGTACAGGGGT  Raphanus raphanistrum subsp. landra
EV573592       --> ACGGTCATATAAAAGTAAACCGTAGGGTTAGCCCGAGGAGGTACAGGGGT  Raphanus raphanistrum subsp. landra
EX768568       --> ACGGTCATATAAAAGTAAACCTTAGGGTTAGCCCGAGGAGGTACAGGGGT  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN19513        --> TCCATCAATGGCTGGAGGTGGTATGAGTGGACCAACAGGGTTAACGTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- TCCATCAATGGCAGGAGGTGGTATGAGTGGACCAACAGGGTTAACGTTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567956       <-- TCCATCAATGGCTGGAGGTGGTATGAGTCGACCAACAGGGTTAACGTTAA  Raphanus raphanistrum subsp. landra
EV568983       <-- TCCATCAATGGCTGGAGGTGGTATGAGTCGACCAACAGGGTTAACGTTAA  Raphanus raphanistrum subsp. landra
EY913738       <-- TCCATCAATGGCAGGAGGTGGTCTGAGTGGACCAACAGGGTTAACATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX764699       <-- TCCATCAATGGCAGGAGGTGGTCTGAGTGGACCAACAGGGTTAACATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909921       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903863       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572786       --> TCCATCAATGGCTGGAGGTGGTATGAGTCGACCAACAGGGTTAACGTTAA  Raphanus raphanistrum subsp. landra
EV573592       --> TCCATCAATGGCTGGAGGTGGTATGAGTCGACCAACAGGGTTAACGTTAA  Raphanus raphanistrum subsp. landra
EX768568       --> TCCATCAATGGCAGGAGGTGGTCTGAGTGGACCAACAGGGTTAACATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               801    -    851
UN19513        --> TTGTGCACACACCACCAGCCGCAACGTTAACTGTGATGTTTCTGTCGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- TTGTGCACA.........................................
EV567956       <-- TTGTGCACACACCACCAGCCGCAACGTTAACTGTGATGTTTCTGTCGGTT
EV568983       <-- TTGTGCACACACCACCAGCCGCAACGTTAACTGTGATGTTTCTGTCGGTT
EY913738       <-- TTGTGCACACACCACCAGCCGCAACGTTAACTGTGATGTTTCTGTCGGTT
EX764699       <-- TTGTGCACACACCACCAGCCGCAACGTTAACTGTGATGTTTCTGTCGGTT
EY909921       --> ..................................................
EY903863       --> ..................................................
EV572786       --> TTGTGCACACACCACCAGCCGCAACGTTAACTGTGATGTTTCTGTCGGTT
EV573592       --> TTGTGCACACACCACCAGCCGCAACGTTAACTGTGATGTTTCTGTCGGTT
EX768568       --> TTGTGCACACACCACCAGCCGCAACGTTAACTGTG...............

               851    -    901
UN19513        --> TCATTGATGCGAGAATTAATTTCCATTTTCAGAGAAATTTAGGGCTGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- ..................................................
EV567956       <-- TCATTGATGCGAGAATTAATTTCCATTTTCAGAGAAATTTAGGGCTGTTT
EV568983       <-- TCATTGATGCGAGAATTAATTTCCATTTTCAGAGAAATTTAGGGCTGTTT
EY913738       <-- TCATTAAAGCGAGAATTAGTTTCCATTTTTAGAGAAATTTAGGGCTGTTT
EX764699       <-- TCATTAAAGCGAGAATTAGTTTCCGTTTTTAGAGAAATTTAGGGCTGTTT
EY909921       --> ..................................................
EY903863       --> ..................................................
EV572786       --> TCATTGATGCGAGAATTAATTTCCATTTTCAGAG................
EV573592       --> TCATTGATGCGA......................................
EX768568       --> ..................................................

               901    -    951
UN19513        --> CTGCGAAGAGATGAACTGATTCCAAGCAGTTCAGATGGAAGAATGGTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY908102       <-- ..................................................
EV567956       <-- CTGCGAAGAGATGAACTGATTCCAAGCAGTTCAGATGGAAGAATGGTTCC
EV568983       <-- CTGCGAAGAGATGAACTGATTCCAAGCAGTTCAGATGGAAGAATGGTTCC
EY913738       <-- CTGCcc............................................
EX764699       <-- CTcc..............................................
EY909921       --> ..................................................
EY903863       --> ..................................................
EV572786       --> ..................................................
EV573592       --> ..................................................
EX768568       --> ..................................................