Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN19521

               1      -     51
UN19521        --> GGAAATAAAACATAAAAATCCAACTCCTAGCAAAAAGAAAAGCAATTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530708       <-- ..................................................
FD975634       <-- ..................................................
FD573474       <-- ..................................................
EY903688       <-- ..................................................
FD534905       --> GGAAATAAAACATAAAAATCCAACTCCTAGCAAAAAGAAAAGCAATTGAT
FD979622       --> ...................................gGAAAAGCAATTGAT
EY907858       --> ..................................................
EY938454       --> ..................................................
FD569230       --> ..................................................

               51     -    101
UN19521        --> TCAGTCGAAATGGCTATCAGACAACCACCGATGCTAATCCTCATCTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530708       <-- ..................................................
FD975634       <-- ..................................................
FD573474       <-- ..................................................
EY903688       <-- ..................................................
FD534905       --> TCAGTCGAAATGGCTATCAGACAACCACCGATGCTAATCCTCATCTTCCT
FD979622       --> TCAGTCGAAATGGCTATCAGACAACCACCGATGCTAATCCTCATCTTCCT
EY907858       --> ..................ggagAACCACCGATGCTAATCCTCATCTTCCT
EY938454       --> ..................gggattcaatCGATGCTAATCCTCATCTTCCT
FD569230       --> ................aattgattcaatCGATGCTAATCCTCATCTTCCT

               101    -    151
UN19521        --> CCTCTTTACCTCCGGCGCCCAAATTGCTACCGCTAATGAGCCGGTCCCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530708       <-- ..................................................
FD975634       <-- ..................................................
FD573474       <-- ..................................................
EY903688       <-- ..................................................
FD534905       --> CCTCTTTACCTCCGGCGCCCAAATTGCTACCGCTAATGAGCCGGTGCCGG
FD979622       --> CCTCTTTACCTCCGGCGCCCAAATTGCTACCGCTAATGAGCCGGTGCCGG
EY907858       --> CCTCTTTACCTCCGGCGCCCAAATTGCTACCGCTAATGAGCCGGTCCCGG
EY938454       --> CCTCTTTACCTCCGGC-CCCAAATTGCTACCGCTAATGAGCCGGTCCCGG
FD569230       --> CCTCTTTACCTCCGGCGCCCAAATTGCTACCGCTAATGAGCCGGTCCCGG

               151    -    201
UN19521        --> CGCCATGGCCACACCAATTTCACGCGCTACTGTTCATGAATTACTCGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530708       <-- ...............................GTTCATGAATTACTCGGGA
FD975634       <-- ..................................................
FD573474       <-- ..................................................
EY903688       <-- ..................................................
FD534905       --> CGCCATGGCCACACCAATTTCACGCGCTACTGTTCATGAATTACTCGGGA
FD979622       --> CGCCATGGCCACACCAATTTCACGCGCTACTGTTCATGAATTACTCGGGA
EY907858       --> CGCCATGGCCACACCAATTTCACGCGCTACTGTTCATGAATTACTCGGGA
EY938454       --> CGCCATGGCCACACCAATTTCACGCGCTACTGTTCATGAATTACTCGGGA
FD569230       --> CGCCATGGCCACACCAATTTCACGCGCTACTGTTCATGAATTACTCGGGA

               201    -    251
UN19521        --> GACCTCTCGATGATTGACCTTTGGTACGACTGGCCCAACGGTCGTAATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530708       <-- GACCTCTCGATGATTGACCTTTGGTACGACTGGCCCAACGGTCGTAATTT
FD975634       <-- ..................................................
FD573474       <-- ..................................................
EY903688       <-- ..................................................
FD534905       --> GACCTCTCGATGATTGACCTTTGGTACGACTGGCCCAACGGTCGTAATTT
FD979622       --> GACCTCTCGATGATTGACCTTTGGTACGACTGGCCCAACGGTCGTAATTT
EY907858       --> GACCTCTCGATGATTGACCTTTGGTATGACTGGCCCAACGGTCGTAATTT
EY938454       --> GACCTCTCGATGATTGACCTTTGGTACGACTGGCCCAACGGTCGTAATTT
FD569230       --> GACCTCTCGATGATTGACCTTTGGTACGACCGGCCCAACGGTCGTAATTT

               251    -    301
UN19521        --> CAATATCATACAGGAGCAGCTCGGTGGCATCACCTACGACCTCGAATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530708       <-- CAATATCATACAGGAGCAGCTCGGTGGCATCACCTACGACCTCGAATGGA
FD975634       <-- ..................................................
FD573474       <-- ..................................................
EY903688       <-- ..................................................
FD534905       --> CAATATCATACAGGAGCAGCTCGGTGGCATCACCTACGACCTCGAATGGA
FD979622       --> CAATATCATACAGGAGCAGCTCGGTGGCATCACCTACGACCTCGAATGGA
EY907858       --> CAATATCATACAGGAGCAGCTCGGTGGCATCACCTACGACCTCGAATGGA
EY938454       --> CAATATCATACAGGAGCAGCTCGGTGGCATCACCTACGACCTCGAATGGA
FD569230       --> CAATATCATACAGGAGCAGCTCGGTGGCATCACCTACGACCTCGAATGGA

               301    -    351
UN19521        --> ACAACGGCACGTCCTTCGTCTACACCCTCGACGACTCAAAATCGTGCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530708       <-- ACAACGGAACGTCCTTCGTCTACACCCTCGACGACTCAAAATCGTGCCGT  Raphanus raphanistrum subsp. maritimus
FD975634       <-- ..............TTCGTCTACACCCTCGACGACTCAAAATCGTGCCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD573474       <-- ....................TACACCCTCGACGACTCAAAATCGTGCCGT  Raphanus sativus cv Early Scarlet Globe
EY903688       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD534905       --> ACAACGGAACGTCCTTCGTCTACACCCTCGACGACTCAAAATCGTGCCGT  Raphanus raphanistrum subsp. maritimus
FD979622       --> ACAACGGAACGTCCTTCGTCTACACCCTCGACGACTCAAAATCGTGCCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907858       --> ACAACGGCACGTCCTTCGTTTACACCCTCGACGACTCAAAATCGTGCCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY938454       --> ACAACGGCACGTCCTTCGTCTACACCCTCGACGACTCAAAATCGTGCCGT  Raphanus sativus cv Early Scarlet Globe
FD569230       --> ACAACGGCACGTCCTTCGTCTACACCCTCGACGACTCAAAATCGTGCCGT  Raphanus sativus cv Early Scarlet Globe

               351    -    401
UN19521        --> TCAGCTCAACTTGAGGTTGGAATCTTGCGACCAAACTGGCTAGATGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530708       <-- TCAGCTCAACTTGAGGTTGGAATCTTGCGACCAAACTGGCTAGATGGAGC  Raphanus raphanistrum subsp. maritimus
FD975634       <-- TCAGCTCAACTTGAGGTTGGAATCTTGCGACCAAACTGGCTAGATGGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD573474       <-- TCAGCTCAACTTGAGGTTGGAATCTTGCGACCAAACTGGCTAGATGGATC  Raphanus sativus cv Early Scarlet Globe
EY903688       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD534905       --> TCAGCTCAACTTGAGGTTGGAATCTTGCGACCAAACTGGCTAGATGGAGC  Raphanus raphanistrum subsp. maritimus
FD979622       --> TCAGCTCAACTTGAGGTTGGAATCTTGCGACCAAACTGGCTAGATGGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907858       --> TCTGCTCAACTTGAGGTTGGAATCTTGCGACCAAACTGGCTAGATGGAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY938454       --> TCAGCTCAACTTGAGGTTGGAATCTTGCGACCAAACTGGCTAGATGGATT  Raphanus sativus cv Early Scarlet Globe
FD569230       --> TCAGCTCAACTTGAGGTTGGAATCTTGCGACCAAACTGGCTAGATGGATC  Raphanus sativus cv Early Scarlet Globe

               401    -    451
UN19521        --> CAAGTATCAAGGCCAACAACTTGTGAATGGGTTTCACTGCAATGTATGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530708       <-- CAAGTATCAAGGCCAACAACTTGTGAATGGGTTTCACTGCAATGTATGGG
FD975634       <-- CAAGTATCAAGGCCAACAACTTGTGAATGGGTTTCACTGCAATGTATGGG
FD573474       <-- CAAGTATCAAGGCCAACAACTTGTGAATGGGTTTCACTGCAATGTATGGG
EY903688       <-- ..................................................
FD534905       --> CAAGTATCAAGGCCAACAACTTGTGAATGGGTTTCACTGCAATGTATGGG
FD979622       --> CAAGTATCAAGGCCAACAACTTGTGAATGGGTTTCACTGCAATGTATGGG
EY907858       --> CAAGTATCAAGGCCAACAACTTGTGAATGGGTTTCATTGCAATGTATGGG
EY938454       --> CAAGTATCAAGGCCAACAACTTGTGAATGGGTTTCACTGCAATGTATGGG
FD569230       --> CAAGTATCAAGGCCAACAACTTGTGAATGGGTTTCACTGCAATGTATGGG

               451    -    501
UN19521        --> AGAAAGTAGACTTTATAAGGTACTATGAGGATGTCGAAACCAAGAGACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530708       <-- AGAAAGTAGACTTTATAAGGTACTATGAGGATGTCGAAACCAAGAGACCT
FD975634       <-- AGAAAGTAGACTTTATAAGGTACTATGAGGATGTCGAAACCAAGAGACCT
FD573474       <-- AGAAAGTAGACTTTATAAGGTACTATGAGGATGTCGAAACCAAGAGACCT
EY903688       <-- ..................................................
FD534905       --> AGAAAGTAGACTTTATAAGGTACTATGAGGATGTCGAAACCAAGAGACCT
FD979622       --> AGAAAGTAGACTTTATAAGGTACTATGAGGATGTCGAAACCAAGAGACCT
EY907858       --> AGAAAGTAGACTTTATAAGGTACTATGAGGATGTCGAAACCAAGAGACCC
EY938454       --> AGAAAGTAGACTTTATAAGGTACTATGAGGATGTCGAAACCAAGAGACCT
FD569230       --> AGAAAGTAGACTTTATAAGGTACTATGAGGATGTCGAAACCAAGAGACCT

               501    -    551
UN19521        --> GTTCAATGGATCTTCTATACAGGGAGGGAGGCTCATGTGATGACATTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530708       <-- GTTCAATGGATCTTCTATACAGGGAGGGAGGCTCATGTGATGACATTCGA
FD975634       <-- GTTCAATGGATTTTCTATACAGGGAGGGAGGCTCATGTGATGACATTCGA
FD573474       <-- GTTCAATGGATTTTCTATACAGGGAGGGAGGCTCATGTGATGACATTCGA
EY903688       <-- ................ATACAGGGAGGGAGGCTCATGTGGTGACATTCGA
FD534905       --> GTTCAATGGATCTTCTATACAGGGAGGGAGGCTCATGTGATGACATTCGA
FD979622       --> GTTCAATGGATCTTCTATACAGGGAGGGAGGCTCATGTGATGACATTCGA
EY907858       --> GTTCAATGGATCTTCTATACAGGGAGGGAGGCTCATGTGGTGACATTCGA
EY938454       --> GTTCAATGGATCTTCTATACAGGGAGGGAGGCTCATGTGATGACATTCGA
FD569230       --> GTTCAATGGATCTTCTATACAGGGAGGGAGGCTCATGTGATGACATTCGA

               551    -    601
UN19521        --> GGTTGGCGCAGTACTTGAGGATGAGAAATGGCAAGCGCCGGTTTATTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530708       <-- GGTTGGCGCAGTACTTGAGGATGAGAAATGGCAAGCGCCGGTTTATTGTT
FD975634       <-- GGTTGGCGCAGTACTTGAGGATGAGAAATGGCAAGCGCCGGTTTATTGTT
FD573474       <-- GGTTGGCGCAGTACTTGAGGATGAGAAATGGCAAGCGCCGGTTTATTGTT
EY903688       <-- GGTTGGCGCAGTACTTGAGGATGAGAAATGGCAAGCGCCGGTTTATTGTT
FD534905       --> GGTTGGCGCAGTACTTGAGGAT............................
FD979622       --> GGTTGGCGCAGTACTTGAGGATGAGAAATGGCAAGCGCCGGTTTATTGTT
EY907858       --> GGTTGGCGCAGTACTTGAGGATGAGAAATGGCAAGCGCCGGTTTATTGTT
EY938454       --> GGTTGGCGCAGTACTTGAGGATGAGAAATGGCAAGCGCCGGTTTATTGTT
FD569230       --> GGTTGGCGCAGTACTTGAGGATGAGAAATGGCAAGCGCCGGTTTATTGTT

               601    -    651
UN19521        --> TCAACAAAGAGAAGAAGAGTTTATCAACTGAAGGAGCTTTAAGAGAATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530708       <-- TCAACAAAGAGAAGAAGAGTTTATCGACTAAAGGAGCTTTAAGAGAATTT  Raphanus raphanistrum subsp. maritimus
FD975634       <-- TCAACAAAGAGAAGAAGAGTTTATCGACTGAAGGAGCTTTAAGAGAATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD573474       <-- TCAACAAAGAGAAGAAGAGTTTATTAACTGAAGGAACTTTAAGAGAATTT  Raphanus sativus cv Early Scarlet Globe
EY903688       <-- TCAACAAAGAGAAGAAGAGTTTATCAACTGAAGGAGCTTTAAGAGAATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD534905       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD979622       --> TCAACAAAGAGAAGAAGAGTTTATCGACTGAAGGAGCTTTAAGAGAATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907858       --> TCAACAAAGAGAAGAAGAGTTTATCAACTGAAGGAGCTTTAAGAGAATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY938454       --> TCAACAAAGAGAAGAAGAGTTTATTAACTGAAGGAACTTTAAGAGAATTT  Raphanus sativus cv Early Scarlet Globe
FD569230       --> TCAACAAAGAGAAGAAGAGTTTATTAACTGAAGGAACTTTAAGAGAATTT  Raphanus sativus cv Early Scarlet Globe

               651    -    701
UN19521        --> AGAGGATACAAAGGAAAGGCTGTTTCGTAATGCTAATTACTGAGAGCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530708       <-- AGAGGATACAAAGGAAAGGCTGTTTCGTAATGCTAATTACTGAGAGCTTT
FD975634       <-- AGAGGATACAAAGGAAAGGCTGTTTCGTAATGCTAATTACTGAGAGCTTT
FD573474       <-- AGAGGATACAAAGGAAAGGCTGTTTTGTAACGCTAATTACTGAGAGCTTT
EY903688       <-- AGAGGATACAAAGGAAAGGCTGTTTCGTAATGCTAATTACTGAGAGCTTT
FD534905       --> ..................................................
FD979622       --> AGAGGATACAAAGGAAAGGCTGTTTCGTAATGCTAATTACTGAGAGCTTT
EY907858       --> AGAGGATACAAAGG....................................
EY938454       --> AGAGGATACAAAGG....................................
FD569230       --> AGAGGATACAAAGGAAAGGCTGTTTCGTAACGCTAATTACTGAGAGCTTT

               701    -    751
UN19521        --> TTTTTTTTTTTTTCTTT-TCTTGGATCAAAATAAGATGCAGCAGCTCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530708       <-- TTTTTTTTTTTTCTTTC-TCTTGGATCAAAATAAGATGCAGCAGCTCAAG
FD975634       <-- TTTTTTTTTTTTTCTTTCTCTTGGATCAGAATAAGATGCAGCAGCTCAAG
FD573474       <-- TTTTTTTTTTTT------TCTTGGATCAAAATAAGATGCAGCAGCTCAAG
EY903688       <-- TTTTTTTTTTTT--TTT-TCTTGGATCAAAATAAGATGCAGCAGCTCAAG
FD534905       --> ..................................................
FD979622       --> TTTTTT............................................
EY907858       --> ..................................................
EY938454       --> ..................................................
FD569230       --> CTTTTTTTTTTTTCTT------GGATCAAAATAAGATGCAGCAGCTCAAG

               751    -    801
UN19521        --> AGCAGGAAAAGGGTGAAATAAATTGGCTTATTCTTATTATGAGCCGTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530708       <-- AGCAGGAAAAGGGTGAAATAAATTGGCTTATTCTTATTATGAGCCGTCTA
FD975634       <-- AGCAGGAAAAGGGTGAAATAAATTGGCTTATTCTTATTATGAGCCGTCTA
FD573474       <-- AGCAGGAAAAGGGTGAAATAAATTGGCTTATTCTTATTATGAGCCGTCTA
EY903688       <-- AGCAGGAAAAGGGTGAAATAAATTGGCTTATTCTTATTATGAGCCGTCTA
FD534905       --> ..................................................
FD979622       --> ..................................................
EY907858       --> ..................................................
EY938454       --> ..................................................
FD569230       --> AG................................................

               801    -    851
UN19521        --> AAATCTTTGTACACAGACTTGAAATGTTTTTATTTGAAATCTCGAGGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530708       <-- AAATCTTTGTACACAGACTTGAAATGTTTTTATTTGAAATCTCGAGGCTT
FD975634       <-- AAATCTTTGTACACAGACTTGAAATGTTTTTATTTGAAATCTCGAGGCTT
FD573474       <-- AAATCTTTGTACACAGACTTGAAATGTTTTTATTTGAAATCTCGAGGCTT
EY903688       <-- AAATCTTTGTACACAGACTTGAAATGTTTTTATTTGAAATCTCGAGGCTT
FD534905       --> ..................................................
FD979622       --> ..................................................
EY907858       --> ..................................................
EY938454       --> ..................................................
FD569230       --> ..................................................

               851    -    901
UN19521        --> GTTCATCG
                   ~~~~~~~~
FD530708       <-- GTTCATC.
FD975634       <-- GTTCAgc.
FD573474       <-- GTTCATCG
EY903688       <-- GTTC....
FD534905       --> ........
FD979622       --> ........
EY907858       --> ........
EY938454       --> ........
FD569230       --> ........