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Alignment for radish unigene UN19550

               1      -     51
UN19550        --> GGGTTGCAGATTGAAAGAAAAA-CAAATATCCATACAAACACAATACATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571575       <-- GGGTTGCAGATTGAAAGAAAAAACAAATATCCATACAAACACAATACATA
EW720227       <-- GGGTTGCAGATTGAAAGAAAAA-CAAATATCCATACAAACACAATACATA
EY927912       <-- GGGTTGCAGATTGAAAGAAAAA-CAAATATCCATACAAACACAATACATA
FD537276       <-- ..................................................
FD983077       <-- ..................................................
FD982679       <-- ..................................................
FD983337       <-- ..................................................
FD959918       <-- ..................................................
EW715783       --> GGGTTGCAGATTGAAAGAAAAA-CAAATATCCATACAAACACAATACATA
EY932116       --> GGGTTGCAGATTGAAAGAAAAA-CAAATATCCATACAAACACAATACATA
FD540853       --> GGGTTGCAGATTGAAAGAAAAA-CAAATATCCACACAAACACAATACATA
FD562259       --> GGGTTGCAGATTGAAAGAAAAA-CAAATATCCATACAAACACAATACATA
FD963685       --> .GGTTGCAGATTGAAAGAAAAA-CAAATATCCATACAAACACAATACATA
FD986419       --> ...ggGCAGATTGAAAGAAAAA-CAAATATCCATACAAACACAATACATA
EV566446       --> .......AGATTGAAAGAAAAA-CAAATATCCATACAAACACAATACATA
FD986923       --> ..........ggaAAAGAAAAA-CAAATATCCATACAAACACAATACATA
FD987255       --> ..........ggaAAAGAAAAA-CAAATATCCATACAAACACAATACATA

               51     -    101
UN19550        --> TTTGAGAGACACAGAGGAAGAGAATAAC--CCATTCGTAGTTTTCTTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571575       <-- TTTGAGAGACACAGAGGAAGAGAATAAC--CCATTCGTAGTTTTCTTGCA  Raphanus raphanistrum subsp. landra
EW720227       <-- TCTGAGAGACACAGAGGAAGAGAGTAACGCCCATTCGTAGTTTTCTTGCA  Raphanus sativus var. oleiformis
EY927912       <-- TCTGAGAGACACAGAGGAAGAGAGTAACGCCCATTCGTAGTTTTCTTGCA  Raphanus sativus var. oleiformis
FD537276       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983077       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD982679       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD983337       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD959918       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW715783       --> TCTGAGAGACACAGAGGAAGAGAGTAACGCCCATTCGTAGTTTTCTTGCA  Raphanus sativus var. oleiformis
EY932116       --> TCTGAGAGACACAGAGGAAGAGAGTAACGCCCATTCGTAGTTTTCTTGCA  Raphanus sativus var. oleiformis
FD540853       --> TCTGAGAGACACAGAGGAAGAGAATAAC--CCATTCGTAGTTTTCTTGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD562259       --> TCTGAGAGACACAGAGGAAGAGAGTAACGCCCATTCGTAGTTTTCTTGCA  Raphanus sativus var. oleiformis
FD963685       --> TTTGAGAGACACAGAGGAAGAGAATAAC--CCATTCGTAGTTTTCTTGCA  Raphanus raphanistrum subsp. maritimus
FD986419       --> TTTGAGAGACACGGAGGAAGAGAATAAC--CCATTCGTAGTTTTCTTGCA  Raphanus raphanistrum subsp. landra
EV566446       --> TTTGAGAGACACAGAGGAAGAGAATAAC--CCATTCGTAGTTTTCTTGCA  Raphanus raphanistrum subsp. landra
FD986923       --> TTTGAGAGACACAGAGGAAGAGAATAAC--CCATTCGTAGTTTTCTTGCA  Raphanus raphanistrum subsp. landra
FD987255       --> TTTGAGAGACACAGAGGAAGAGAATAAC--CCATTCGTAGTTTTCTTGCA  Raphanus raphanistrum subsp. landra

               101    -    151
UN19550        --> AAA-AAAAAAAAACAAGCCAAAAATCAGAACGAGAAGATGGGAGTTGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571575       <-- AAATAGAAAAAAACAAGCCAAAAATCAGAACGAGAAGATGGGAGTTGGAG  Raphanus raphanistrum subsp. landra
EW720227       <-- AAA-AAAAAAAA-CAAGCCAAAAATCAGAACGAGAAGATGGGAGTTGGAG  Raphanus sativus var. oleiformis
EY927912       <-- AAA-AAAAAAAAACAAGCCAAAAATCAGAACGAGAAGATGGGAGTTGGAG  Raphanus sativus var. oleiformis
FD537276       <-- .AA-AAAAAAAAACGAGCCAAAAATCAGAACGAGAAGATGGGAGTTGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983077       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD982679       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD983337       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD959918       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW715783       --> AAA-AAAAAAAA-CAAGCCAAAAATCAGAACGAGAAGATGGGAGTTGGAG  Raphanus sativus var. oleiformis
EY932116       --> AAA-AAAAAAAAACAAGCCAAAAATCAGAACGAGAAGATGGGAGTTGGAG  Raphanus sativus var. oleiformis
FD540853       --> AAA-AAAAAAAA-CGAGCCAAAAATCAGAACGAGAAGATGGGAGTTGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD562259       --> AAA-AAAAAAAAACAAGCCAAAAATCAGAACGAGAAGATGGGAGTTGGAG  Raphanus sativus var. oleiformis
FD963685       --> AAATAGAAAAAAACAATCCAAAAATCAGAACGAGAAGATGGGAGTTGGAG  Raphanus raphanistrum subsp. maritimus
FD986419       --> AAATAGAAAAAAACAAGCCAAAAATCAGAACGAGAAGATGGGAGTTGGAG  Raphanus raphanistrum subsp. landra
EV566446       --> AAATAGAAAAAAACAAGCCAAAAATCAGAACGAGAAGATGGGAGTTGGAG  Raphanus raphanistrum subsp. landra
FD986923       --> AAATAGAAAAAAACAAGCCAAAAATCAGAACGAGAAGATGGGAGTTGGAG  Raphanus raphanistrum subsp. landra
FD987255       --> AAATAGAAAAAAACAAGCCAAAAATCAGAACGAGAAGATGGGAGTTGGAG  Raphanus raphanistrum subsp. landra

               151    -    201
UN19550        --> GAACATTAGAGTATATATCTGAGCTAATAGGAAGTGGAGGAAGTCATAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571575       <-- GGACATTAGAGTATATATCTGAGCTAATAGGAAGTGGAGGAAGTCATAGC  Raphanus raphanistrum subsp. landra
EW720227       <-- GAACATTAGAGTATATATCTGAGCTAATAGGAAGTGGAGGAAGTCATAGC  Raphanus sativus var. oleiformis
EY927912       <-- GAACATTAGAGTATATATCTGAGCTAATAGGAAGTGGAGGAAGTCATAGC  Raphanus sativus var. oleiformis
FD537276       <-- GAACATTAGAGTATATATCTGAGCTAATAGGAAGTGGAGGAAGTCATAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983077       <-- .....................................AGGAAGTCATAGC  Raphanus raphanistrum subsp. landra
FD982679       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD983337       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD959918       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW715783       --> GAACATTAGAGTATATATCTGAGCTAATAGGAAGTGGAGGAAGTCATAGC  Raphanus sativus var. oleiformis
EY932116       --> GAACATTAGAGTATATATCTGAGCTAATAGGAAGTGGAGGAAGTCATAGC  Raphanus sativus var. oleiformis
FD540853       --> GAACATTAGAGTATATATCTGAGCTAATAGGAAGTGGAGGAAGTCATAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD562259       --> GAACATTAGAGTATATATCTGAGCTAATAGGAAGTGGAGGAAGTCATAGC  Raphanus sativus var. oleiformis
FD963685       --> GGACATTAGAGTATATATCTGAGCTAATAGGAAGTGGAGGAAGTCATAGC  Raphanus raphanistrum subsp. maritimus
FD986419       --> GGACATTAGAGTATATATCTGAGCTAATAGGAAGTGGAGGAAGTCATAGC  Raphanus raphanistrum subsp. landra
EV566446       --> GGACATTAGAGTATATATCTGAGCTAATAGGAAGTGGAGGAAGTCATAGC  Raphanus raphanistrum subsp. landra
FD986923       --> GGACATAAGAGTATATATCTGAGCTAATAGGAAGTGGAGGAAGTCATAGC  Raphanus raphanistrum subsp. landra
FD987255       --> GGACATAAGAGTATATATCTGAGCTAATAGGAAGTGGAGGAAGTCATAGC  Raphanus raphanistrum subsp. landra

               201    -    251
UN19550        --> TATGGCAAGAGGAAGAAGAAGAAGCAGTTTCAGACAGTGGAGCTCAAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571575       <-- TATGGCAAGAGGAAGAAGAAGAAGCAGTTTCAGACAGTGGAGCTCAAAGT
EW720227       <-- TATGGCAAGAGGAAGAAGAAGAAGCAGTTTCAGACAGTGGAGCTCAAAGT
EY927912       <-- TATGGCAAGAGGAAGAAGAAGAAGCAGTTTCAGACAGTGGAGCTCAAAGT
FD537276       <-- TATGGCAAGAGGAAGAAGAAGAAGCAGTTTCAGACAGTGGAGCTCAAGGT
FD983077       <-- TATGGCAAGAGGAAGAAGAAGAAGCAGTTTCAGACAGTGGAGCTCAAAGT
FD982679       <-- ..................................................
FD983337       <-- ..................................................
FD959918       <-- ..................................................
EW715783       --> TATGGCAAGAGGAAGAAGAAGAAGCAGTTTCAGACAGTGGAGCTCAAAGT
EY932116       --> TATGGCAAGAGGAAGAAGAAGAAGCAGTTTCAGACAGTGGAGCTCAAAGT
FD540853       --> TATGGCAAGAGGAAGAAGAAGAAGCAGTTTCAGACAGTGGAGCTCAAGGT
FD562259       --> TATGGCAAGAGGAAGAAGAAGAAGCAGTTTCAGACAGTGGAGCTCAAAGT
FD963685       --> TATGGCAAGAGGAAGAAGAAGAAGCAGTTTCAGACAGTGGAGCTCAAAGT
FD986419       --> TATGGCAAGAGGAAGAAGAAGAAGCAGTTTCAGACAGTGGAGCTCAAAGT
EV566446       --> TATGGCAAGAGGAAGAAGAAGAAGCAGTTTCAGACAGTGGAGCTCAAAGT
FD986923       --> TATGGCAAGAGGAAGAAGAAGAAGCAGTTTCAGACAGTGGAGCTCAAAGT
FD987255       --> TATGGCAAGAGGAAGAAGAAGAAGCAGTTTCAGACAGTGGAGCTCAAAGT

               251    -    301
UN19550        --> GAGAATGGATTGTGATGGTTGTGTCCTCAAAGTCAAGAACTCTCTTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571575       <-- GAGAATGGATTGTGATGGTTGTGTCCTCAAAGTCAAGAACTCTCTTTCTT
EW720227       <-- GAGGATGGATTGTGATGGTTGTGTCCTCAAAGTCAAGAACTCTCTTTTTT
EY927912       <-- GAGAATGGATTGTGATGGTTGTGTCCTCGAAGTCAAGAACTCTCTTTCTT
FD537276       <-- GAGAATGGATTGTGATGGTTGTGTCCTCAAAGTCAAGAACTCTCTTTCTT
FD983077       <-- GAGAATGGATTGTGATGGTTGTGTCCTCAAAGTCAAGAACTCTCTTTCTT
FD982679       <-- .............................................TTCTT
FD983337       <-- ................................................TT
FD959918       <-- ..................................................
EW715783       --> GAGGATGGATTGTGATGGTTGTGTCCTCAAAGTCAAGAACTCTCTTTCTT
EY932116       --> GAGAATGGATTGTGATGGTTGTGTCCTCGAAGTCAAGAACTCTCTTTCTT
FD540853       --> GAGAATGGATTGTGATGGTTGTGTCCTCAAAGTCAAGAACTCTCTTTCTT
FD562259       --> GAGAATGGATTGTGATGGTTGTGTCCTCAAAGTCAAGAACTCTCTTTCTT
FD963685       --> GAGAATGGATTGTGATGGTTGTGTCCTCAAAGTCAAGAACTCTCTTTCTT
FD986419       --> GAGAATGGATTGTGATGGTTGTGTCCTCAAAGTCAAGAACTCTCTTTCTT
EV566446       --> GAGAATGGATTGTGATGGTTGTGTCCTCAAAGTCAAGAACTCTCTTTCTT
FD986923       --> GAGAATGGATTGTGATGGTTGTGTCCTCAAAGTCAAGAACTCTCTTTCTT
FD987255       --> GAGAATGGATTGTGATGGTTGTGTCCTCAAAGTCAAGAACTCTCTTTCTT

               301    -    351
UN19550        --> CTCTAAAAGGAGTTAAATCGGTGGAGATAAACAAGAAGCAGCAAAAGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571575       <-- CTCTAAAAGGAGTTAAATCGGTGGAGATAAACAAGAAGCAGCAAAAGGTG
EW720227       <-- CTCTAAAAGGAGTTAAATCGGTGGAGATAAACAAGAAGCAGCAAAAGGTG
EY927912       <-- CTCTAAAAGGAGTTAAATCGGTGGAGATAAACAAGAAGCAGCAAAAGGTG
FD537276       <-- CTCTAAAAGGAGTTAAATCGGTGGAGATAAACAAGAAGCAGCAAAAGGTG
FD983077       <-- CTCTAAAAGGAGTTAAATCGGTGGAGATAAACAAGAAGCAGCAAAAGGTG
FD982679       <-- CTCTAAAAGGAGTTAAATCGGTGGAGATAAACAAGAAGCAGCAAAAGGTG
FD983337       <-- CTCTAAAAGGAGTTAAATCGGTGGAGATAAACAAGAAGCAGCAAAAGGTG
FD959918       <-- ....AAAAGGAGTTAAATCGGTGGAGATAAACAAGAAGCAGCAAAAGGTG
EW715783       --> CTCTAAAAGGAGTTAAATCGGTGGAGATAAACAAGAAGCAGCAAAAGGTG
EY932116       --> CTCTAAAAGGAGTTAAATCGGTGGAGATAAACAAGAAGCAGCAAAAGGTG
FD540853       --> CTCTAAAAGGAGTTAAATCGGTGGAGATAAACAAGAAGCAGCAAAAGGTG
FD562259       --> CTCTAAAAGGAGTTAAATCGGTGGAGATAAACAAGAAGCAGCAAAAGGTG
FD963685       --> CTCTAAAAGGAGTTAAATCGGTGGAGATAAACAAGAAGCAGCAAAAGGTG
FD986419       --> CTCTAAAAGGAGTTAAATCGGTGGAGATAAACAAGAAGCAGCAAAAGGTG
EV566446       --> CTCTAAAAGGAGTTAAATCGGTGGAGATAAACAAGAAGCAGCAAAAGGTG
FD986923       --> CTCTAAAAGGAGTTAAATCGGTGGAGATAAACAAGAAGCAGCAAAAGGTG
FD987255       --> CTCTAAAAGGAGTTAAATCGGTGGAGATAAACAAGAAGCAGCAAAAGGTG

               351    -    401
UN19550        --> ACGGTGAGTGGTTACGCGGAACCGAGCAAGGTGCTGAAGAAGGCCAAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571575       <-- ACGGTGAGTGGTTACGCGGAACCGAGCAAGGTGCTGAAGAAGGCCAAAGC
EW720227       <-- ACGGTGAGTGGTTACGCGGAACCGAGCAAGGTGCTGAAGAAGGCCAAAGC
EY927912       <-- ACGGTGAGTGGTTACGCGGAACCGAGCAAGGTGCTGAAGAAGGCCAAAGC
FD537276       <-- ACGGTGAGTGGTTACGCGGAACCGAGCAAGGTGCTGAAGAAGGCCAAAGC
FD983077       <-- ACGGTGAGTGGTTACGCGGAACCGAGCAAGGTGCTGAAGAAGGCCAAAGC
FD982679       <-- ACGGTGAGTGGTTACGCGGAACCGAGCAAGGTGCTGAAGAAGGCCAAAGC
FD983337       <-- ACGGTGAGTGGTTACGCGGAACCGAGCAAGGTGCTGAAGAAGGCCAAAGC
FD959918       <-- ACGGTGAGTGGTTACGCGGAACCGAGCAAGGTGCTGAAGAAGGCCAAAGC
EW715783       --> ACGGTGAGTGGTTACGCGGAACCGAGCAAGGTGCTGAAGAAGGCCAAAGC
EY932116       --> ACGGTGAGTGGTTACGCGGAACCGAGCAAGGTGCTGAAGAAGGCCAAAGC
FD540853       --> ACGGTGAGTGGTTACGCGGAACCGAGCAAGGTGCTGAAGAAGGCCAAAGC
FD562259       --> ACGGTGAGTGGTTACGCGGAACCGAGCAAGGTGCTGAAGAAGGCCAAAGC
FD963685       --> ACGGTGAGTGGTTACGCGGAACCGAGCAAGGTGCTGAAGAAGGCCAAAGC
FD986419       --> ACGGTGAGTGGTTACGCGGAACCGAGCAAGGTGCTGAAGAAGGCCAAAGC
EV566446       --> ACGGTGAGTGGTTACGCGGAACCGAGCAAGGTGCTGAAGAAGGCCAAAGC
FD986923       --> ACGGTGAGTGGTTACGCGGAACCGAGCAAGGTGCTGAAGAAGGCCAAAGC
FD987255       --> ACGGTGAGTGGTTACGCGGAACCGAGCAAGGTGCTGAAGAAGGCCAAAGC

               401    -    451
UN19550        --> GACGGGGAAGAAGGCTGAGATATGGCCTTACGTTCCCTACAACTTGGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571575       <-- GACGGGGAAGAAGGCTGAGATATGGCCATACGTTCCCTACAACTTGGTGG  Raphanus raphanistrum subsp. landra
EW720227       <-- GACGGGGAAGAAGGCTGAGATATGGCCTTACGTTCCCTACAACTTGGTGG  Raphanus sativus var. oleiformis
EY927912       <-- GACGGGGAAGAAGGCTGAGATATGGCCTTACGTTCCCTACAACTTGGTGG  Raphanus sativus var. oleiformis
FD537276       <-- GACGGGGAAGAAGGCTGAGATATGGCCTTACGTTCCCTACAACTTGGTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983077       <-- GACGGGGAAGAAGGCTGAGATATGGCCTTACGTTCCCTACAACTTGGTGG  Raphanus raphanistrum subsp. landra
FD982679       <-- GACGGGGAAGAAGGCTGAGATATGGCCTTACGTTCCCTACAACTTGGTGG  Raphanus raphanistrum subsp. landra
FD983337       <-- GACGGGGAAGAAGGCTGAGATATGGCCTTACGTTCCCTACAACTTGGTGG  Raphanus raphanistrum subsp. landra
FD959918       <-- GACGGGGAAGAAGGCTGAGATATGGCCATACGTTCCCTACAACTTGGTGG  Raphanus raphanistrum subsp. maritimus
EW715783       --> GACGGGGAAGAAGGCTGAGATATGGCCTTACGTTCCCTACAACTTGGTGG  Raphanus sativus var. oleiformis
EY932116       --> GACGGGGAAGA.......................................  Raphanus sativus var. oleiformis
FD540853       --> GACGGGGAAGAAGGCTGAGATATGGCCTTACGTTCCCTACAACTTGGTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD562259       --> GACGGGGAAGAAGGCTGAGATATGGCCTTACGTTCCCTACAACTTGGTGG  Raphanus sativus var. oleiformis
FD963685       --> GACGGGGAAGAAGGCTGAGATATGGCCATACGTTCCCTACAACTTGGTGG  Raphanus raphanistrum subsp. maritimus
FD986419       --> GACGGGGAAGAAGGCTGAGATATGGCCTTACGTTCCCTACAACTTGGTGG  Raphanus raphanistrum subsp. landra
EV566446       --> GACGGGGAAGAAGGCTGAGATATGGCCATACGTTCCCTACAACTTGGTGG  Raphanus raphanistrum subsp. landra
FD986923       --> GACGGGGAAGAAGGCTGAGATATGGCCTT.....................  Raphanus raphanistrum subsp. landra
FD987255       --> GACGGGGAAGAAGGCTGAGATATGGCCTTACGTTCCCTACAACTTGGTGG  Raphanus raphanistrum subsp. landra

               451    -    501
UN19550        --> CTCAGCCCTACATAGCTCAGGCTTACGACAAGAAGGCGCCGCCTGGTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571575       <-- CTCAGCCCTACATAGCTCAGGCTTACGACAAGAAGGCGCCGCCTGGTTAC  Raphanus raphanistrum subsp. landra
EW720227       <-- CTCAGCCCTACATCGCTCAGGCTTACGACAAGAAGGCGCCGCCTGGTTAC  Raphanus sativus var. oleiformis
EY927912       <-- CTCAGCCCTACATCGCTCAGGCTTACGACAAGAAGGCGCCGCCTGGTTAC  Raphanus sativus var. oleiformis
FD537276       <-- CTCAGCCCTACATAGCTCAGGCTTACGACAAGAAGGCGCCGCCTGGTTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983077       <-- CTCAGCCCTACATAGCTCAGGCTTACGACAAGAAGGCGCCGCCTGGTTAC  Raphanus raphanistrum subsp. landra
FD982679       <-- CTCAGCCCTACATAGCTCAGGCTTACGACAAGAAGGCGCCGCCTGGTTAC  Raphanus raphanistrum subsp. landra
FD983337       <-- TTCAGCCCTACATAGCTCAGGCTTACGACAAGAAGGCGCCGCCTGGTTAC  Raphanus raphanistrum subsp. landra
FD959918       <-- TTCAGCCCTACATAGCTCAGGCTTACGACAAGAAGGCGCCGCCTGGTTAC  Raphanus raphanistrum subsp. maritimus
EW715783       --> CTCAGCCCTACATCGCTCAGGCTTACGACAAGAAGGCGCCGCCTGGTTAC  Raphanus sativus var. oleiformis
EY932116       --> ..................................................  Raphanus sativus var. oleiformis
FD540853       --> CTCAGCCCTACATAGCTCAGGCTTACGACAAGAAGGCGCCGCCTGGTTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD562259       --> CTCAGCCCTACATCGCTCAGGCTTACGACAAGAAGGCGCCGCCTGGTTAC  Raphanus sativus var. oleiformis
FD963685       --> CTCAGCCCTACATAGCTCAGGCTTACGACAAGAAGGCGCCGCCTGGTTAC  Raphanus raphanistrum subsp. maritimus
FD986419       --> CTCAGCCCTACATAGCTCAGGCTTACGACAAGAAGGCGCCGCCTGGTTAC  Raphanus raphanistrum subsp. landra
EV566446       --> CTCAGCCCTACATAGCTCAGGCTTACGACAAGAAGGCGCCGCCTGGTTAC  Raphanus raphanistrum subsp. landra
FD986923       --> ..................................................  Raphanus raphanistrum subsp. landra
FD987255       --> CTCAGCCCTACATAGCTCAGGCTTACGACAAGAAGGCGCCGCCTGGTTAC  Raphanus raphanistrum subsp. landra

               501    -    551
UN19550        --> GTCAGAAAAGTCGACCCATACGCCACCACGGGGACGATGGCTGTTTACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571575       <-- GTCAGAAAAGTCGACCCATACGCCACCACGGGGACGATGGCTGTCTACAA
EW720227       <-- GTCAGAAAAGTCGACCCATACGCCACCACGGGGACGATGGCTGTTTACAA
EY927912       <-- GTCAGAAAAGTCGACCCATACGCCACCACGGGGACGATGGCTGTTTACAA
FD537276       <-- GTCAGAAAAGTCGACCCATACGCCACCACGGGGACGATGGCTGTTTACAA
FD983077       <-- GTCAGAAAAGTCGACCCATACGCCACCACGGGGACGATGGCTGTTTACAA
FD982679       <-- GTCAGAAAAGTCGACCCATACGCCACCACGGGGACGATGGCTGTTTACAA
FD983337       <-- GTCAGAAAAGTCGACCCATACGCCACCACGGGGACGATGGCTGTTTACAA
FD959918       <-- GTCAGAAAAGTCGACCCATACGCCACCACGGG-ACGATGGCTGTTTACAA
EW715783       --> GTCAGAAAAGTCGACCCATACGCCACCACGGGGACGATGGCTGTTTACAA
EY932116       --> ..................................................
FD540853       --> GTCAGAAAAGTCGACCCATACGCCACCACGGGGACGATGGCTGTTTACAA
FD562259       --> GTCAGAAAAGTCGACCCATACGCCACCACGGGGACGATGGCTGTTTACAA
FD963685       --> GTCAGAAAAGTCGACCCATACGCCACCACGGG-ACGATGGCTGTTTACAA
FD986419       --> GTCAGAAAAGTCGACCCATACGCCACCACGGGGACGATGGCTGTTTACAA
EV566446       --> GTCAGAAAAGTCGACCCATACGCCACCACGGGGACGATGGCTGTCTACAA
FD986923       --> ..................................................
FD987255       --> GTCAGAAAAGTCGACCCATACGCCACCACGGGGACGATGGCTGTTTACAA

               551    -    601
UN19550        --> CGATGACCCTTCTTACACTTCTATGTTTAGTGATGATAATCCTAATGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571575       <-- CGATGACCCTTCTTACACTTCTATGTTTAGTGATGATAATCCTAATGCTT
EW720227       <-- CGATGACCCTTCTTACACTTCTATGTTTAGTGATGATAATCCTAATGCTT
EY927912       <-- CGATGACCCTTCTTACACTTCTATGTTTAGTGATGATAATCCTAATGCTT
FD537276       <-- CGATGACCCTTCTTACACTTCTATGTTTAGTGATGATAATCCTAATGCTT
FD983077       <-- CGATGACCCTTCTTACACTTCTATGTTTAGTGATGATAATCCTAATGCTT
FD982679       <-- CGATGACCCTTCTTACACTTCTATGTTTAGTGATGATAATCCTAATGCTT
FD983337       <-- CGATGACCCTTCTTACACTTCTATGTTTAGTGATGATAATCCTAATGCTT
FD959918       <-- CGATGACTCTTCTTACACTTCTATGTTTAGTGATGATAATCCTAATGCTT
EW715783       --> CGATGACCCTTCTTACACTTCTATGTTTAGTGATGATAATCCTAATGCTT
EY932116       --> ..................................................
FD540853       --> CGATGACCCTTCTTACACTTCTATGTTTAGTGATGATAATCCTAATGCTT
FD562259       --> CGATGACCCTTCTTACACTTCTATGTTTAGTGATGATAATCCTAATGCTT
FD963685       --> CGATGACTCTTCTTACACTTCTATGTTTAGTGATGATAATCCTAATGCTT
FD986419       --> CGATGACCCTTCTTACACTTCTATGTTTAGTGATGATAATCCTAATGCTT
EV566446       --> CGATGACCCTTCTTACACTTCTATGTTTAGTGATGATAATCCTAATGCTT
FD986923       --> ..................................................
FD987255       --> CGATGACCCTTCTTACACTTCTATGTTTAGTGATGATAATCCTAATGCTT

               601    -    651
UN19550        --> GCTCCATTATGTAATTACTAAATCAATAATACAGACGGTTTATATGTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571575       <-- GCTCCATTATGTAATTACTAAATCAATAATACAGACGGTTTATATGTATA  Raphanus raphanistrum subsp. landra
EW720227       <-- GCTCCATTATGTAATTACTAAATCAATAATAAAGACGGTTTATATGTATA  Raphanus sativus var. oleiformis
EY927912       <-- GCTCCATTACGTAATTACTAAATCAATAATAAAGACGGTTTATATGTATA  Raphanus sativus var. oleiformis
FD537276       <-- GCTCCATTATGTAATTACTAAATCAATAATAAAGACGGTTTATATGTATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983077       <-- GCTCCATTATGTAATTACTAAATCAATAATACAGACGGTTTATATGTATA  Raphanus raphanistrum subsp. landra
FD982679       <-- GCTCCATTATGTAATTACTAAATCAATAATACAGACGGTTTATATGTATA  Raphanus raphanistrum subsp. landra
FD983337       <-- GCTCCATTATGTAATTACTAAATCAATAATACAGACGGTTTATATGTATA  Raphanus raphanistrum subsp. landra
FD959918       <-- GCTCCATTATGTAATTACTAAATCAATAATACAGACGGTTTATATGTATA  Raphanus raphanistrum subsp. maritimus
EW715783       --> GCTCCATTATGTAATTACTAAATCAATAATAAAGACGGTTTATATGTATA  Raphanus sativus var. oleiformis
EY932116       --> ..................................................  Raphanus sativus var. oleiformis
FD540853       --> GCTCCATTATGTAATTACTAAATCAATAATAAAGACGGTTTATATGTATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD562259       --> GCTCCATTATGTAATTACTAAATCAATAATAAAGACGGTTTATATGTATA  Raphanus sativus var. oleiformis
FD963685       --> GCTCCATTATGTAATTACTAAATCAATAATACAGACGGTTTATATGTATA  Raphanus raphanistrum subsp. maritimus
FD986419       --> GCTCCATTATGTAATTACTAAATCAATAATACAGACGGTTTATATGTATA  Raphanus raphanistrum subsp. landra
EV566446       --> GCTCCATTATGTAATTACTAAATCAATAATACAGACGGTTTATATGTATA  Raphanus raphanistrum subsp. landra
FD986923       --> ..................................................  Raphanus raphanistrum subsp. landra
FD987255       --> GCTCCATTATGTAATTACTAAATCAATAATACAGACGGTTTATATGTATA  Raphanus raphanistrum subsp. landra

               651    -    701
UN19550        --> TGTATA--AATATGAGTTATATAGATTTTGGTGT-TTTTT-GTTCAGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571575       <-- TGTATA--AATATGAGTTATATAGATTTTGGTGTCTTTTT-GTTCAGGAT
EW720227       <-- TGTATA--AATATGAGTTATATAGATTTTGGTGT-TTTTT-GTTCAGGAT
EY927912       <-- TGTATA--AATATGAGTTATATAGATTTTGGTGT-TTTTT-GTTCAGGAT
FD537276       <-- TGTATATAAATATGAGTTATATAGATTTTGGTGT-TTTTTTGTTCAGGAT
FD983077       <-- TGTATA--AATATGAGTTATATAGATTTTGGTGT-TTTTTTGTTCAGAAT
FD982679       <-- TGTATA--AATATGAGTTATTTAGATTTTGGTGT-TTTTTTGTTCAGAAT
FD983337       <-- TGTATA--AATATGAGTTATATAGATTTTGGTGT-TTTTTTGTTCAGAAT
FD959918       <-- TGTATA--AATATGAGTTATATAGATTTTGGTGTCTTTTT-GTTCAGGAT
EW715783       --> TGTATA--AATATGAGTTATATAGATTTTGGTGT-TTTTT-GTTCACGAT
EY932116       --> ..................................................
FD540853       --> TGTATATAAATATGAGTTATATAG..........................
FD562259       --> TGTATA--AATATGAGTTATATAGATTTTGGTGT-TTTTgt.........
FD963685       --> TGTATA--AATATGAGTTATATAGATTTTGGTGTct..............
FD986419       --> TGTATA--AATATGAGTTATTTAGATTTTGGTGT-TTTTT-GTTCAGAAT
EV566446       --> TGTATA--AATATGAGTTATATAGATTTTGGTGTCTTTTT-GTTCACGAT
FD986923       --> ..................................................
FD987255       --> TGTATA--AATATGAGTTATATAGATTTTGGTGT-TTTTT-GTTCAGAAT

               701    -    751
UN19550        --> TTTGTCTTCTTTTGCATGTGCTTTCTGTTTGTGTTACAAGAATGTTAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571575       <-- TTTGTCTTCTTTTGCATGTGCTTTCTGTTTGTGTTACAAGAATGTTAATT
EW720227       <-- TTTGTCTTCTTTTGCATGTGCTTTATGTTTGTGTTACAAGAATGTTAATT
EY927912       <-- TTTGTCTTCTTTTGCATGTGCTTTATGTTTGTGTTACAAGAATGTTAATT
FD537276       <-- TTTGTCTTCTTTTGCATGTGCTTTCTGTTTGTGTTATAAGAATGTTAATA
FD983077       <-- TTTGTCTTCTTTTGCATGTGCTTTCTGTTTGTGTTACAA...........
FD982679       <-- TTTGTCTTCTTTTGCATGTGCTTTCTGTTTGTGTTACAAGAATGTTAATT
FD983337       <-- TTTGTCTTCTTTTGCATGTGCTTTCTGTTTGTGTTACAAGAATGTTAATT
FD959918       <-- TTTGTCTTCTTTTGCATGTGCTTTCTGTTTGTGTTACAAGAATGTTAATT
EW715783       --> TTTGTCTTCTTTTGCATGTGCTTTATGTTTGTGTTACAAGAATGTTAATT
EY932116       --> ..................................................
FD540853       --> ..................................................
FD562259       --> ..................................................
FD963685       --> ..................................................
FD986419       --> TTTGTCTTCTTTTGCATGTGCTTTCTGTTTGTGTTACAAGAATG......
EV566446       --> TTTGTCTTCTTTTGCATGTGCTTTCTGTTTGTGTTACAAGAATGTTAATT
FD986923       --> ..................................................
FD987255       --> TT-GTCTT..........................................

               751    -    801
UN19550        --> AATTTTAATAAATGCCTATTATATAGACTAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571575       <-- AATTTTAATAAATGCCTATTATATAGACT....
EW720227       <-- AATTTTAATAAATGCCTATTATATAGACTAATC
EY927912       <-- AATTTT...........................
FD537276       <-- AATgcctattatatagact..............
FD983077       <-- .................................
FD982679       <-- AATTTTAATAAATGCC.................
FD983337       <-- AATTTTAATAAATGCCTATTATATAGACc....
FD959918       <-- AATTTTAATAAATGCCTATTATATAGACc....
EW715783       --> AATTTTAATAAATGCCTATTATATAGACTAATC
EY932116       --> .................................
FD540853       --> .................................
FD562259       --> .................................
FD963685       --> .................................
FD986419       --> .................................
EV566446       --> AATTTTAATAAATGCCTATTATATAGA......
FD986923       --> .................................
FD987255       --> .................................