1 - 51
UN19553 --> GGAAGATGGACATCGTATAGAATCAACTTCTCTCTCCTCAATTTCTCTCT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- ..................................................
EX752328 <-- ..................................................
FD552729 <-- ..................................................
FD555750 <-- ..................................................
FD556411 --> GGAAGATGGACATCGTATAGAATCAACTTCTCTCTCCTCAATTTCTCTCT
EX748382 --> .....tgGGACATCGTATAGAATCAACTTCTCTCTCCTCAATTTCTCTCT
FD560143 --> ..............ggATAGAATCAACTTCTCTCTCCTCAATTTCTCTCT
FD542896 --> ................gggattgtttatcCTCTCTCCTCAATTTCTCTCT
FY444378 --> ..................................................
51 - 101
UN19553 --> CGCTTCTATCTAAAAGTTTACATCTTTGATCACCGTTTTACCGGCCGACG
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- ..................................................
EX752328 <-- ..................................................
FD552729 <-- ..................................................
FD555750 <-- ..................................................
FD556411 --> CGCTTCTATCTAAAAGTTTACATCTTTGATCACCGTTTTACCGGCCGACG
EX748382 --> CGCTTCTATCTAAAAGTTTACATCTTTGATCACCGTTTTACCGGCCGACG
FD560143 --> CGCTTCTATCTAAAAGTTTACATCTTTGATCACCGTTTTACCGGCCGACG
FD542896 --> CGCTTCTATCTAAAAGTTTACATCTTTGATCACCGTTTCACCGGCCGACG
FY444378 --> ..........................................GGCCGACG
101 - 151
UN19553 --> GGTGGGCTCCCATAGCCACCGTCGGTCCGGTCTTGATTTTCGTTTCTCCG
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- ..................................................
EX752328 <-- ..................................................
FD552729 <-- ..................................................
FD555750 <-- ..................................................
FD556411 --> GGTGGGCTCCCATAGCCACCGTCGGTCCGGTCTTGATTTTCGTTTCTCCG
EX748382 --> GGTGGGCTCCCATAGCCACCGTCGGTCCGGTCTTGATTTTCGTTTCTCCG
FD560143 --> GGTGGGCTCCCATAGCCACCGTCGGTCCGGTCTTGATTTTCGTTTCTCCG
FD542896 --> GGTGGGCTTCCATAGCCACCGTCGGTCCGGTCTTGATTTTCGTTTCTCCG
FY444378 --> GGTGGGCTCCCATAGACACCGTCGGTCCGGTCTTGATTTTCGTTTCTCCG
151 - 201
UN19553 --> TTTGTATATCTTTCGG-TCGGTTCAAAGTTTCCTGTGTAGAT-CTAGATC
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- ..................................................
EX752328 <-- ..................................................
FD552729 <-- ..................................................
FD555750 <-- ..................................................
FD556411 --> TTTGTATATCTTTCGG-TCGGTTCAAAGTTTCCTGTGTAGGT-CTAGATC
EX748382 --> TTTGTATATCTTTCGG-TCGGTTCAAAGTTTCCTGTGTAGAT-CTAGATC
FD560143 --> TTTGTATATCTTTCGG-TCGGTTCAAAGTTTCCTGTGTAGAT-CTAGATC
FD542896 --> TTTGTATATCTTTCGGCTCGGTTCAAAGTTTCCTGTGTAGATTCTAGATC
FY444378 --> TTTGTATATCTTTCGG-TCGGTTCAAAGTTTCCTGTGTAGAT-CTAGATC
201 - 251
UN19553 --> TAGATTATCAGATCGGTTTTGTTAAAGATAGTTTGACGGTGGTGGCTTCT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- ..........GATCGGTTTTGTTGAAGATAGTTTGACGGTGGTGGCTTCT Raphanus raphanistrum subsp. raphanistrum (MS)
EX752328 <-- ......................TAAAGATAGTTTGACGGTGGTGGCTTCT Raphanus raphanistrum subsp. maritimus
FD552729 <-- .................................................. Raphanus raphanistrum subsp. landra
FD555750 <-- .................................................. Raphanus raphanistrum subsp. landra
FD556411 --> TAGATTATCAGATCGGTTTTGTTAAAGATAGTTTGACGGTGGTGGCTTCT Raphanus raphanistrum subsp. landra
EX748382 --> TAGATTATCAGATCGGTTTTGTTAAAGATAGTTTGACGGTGGTGGCTTCT Raphanus raphanistrum subsp. maritimus
FD560143 --> TAGATTATCAGATCGGTTTTGTTAAAGATAGTTTGACGGTGGTGGCTTCT Raphanus raphanistrum subsp. landra
FD542896 --> TAGATTATCAGATCGGTTTTGTTGAAGATAGTTTGACGGTGGTGGCTTCT Raphanus raphanistrum subsp. raphanistrum (MS)
FY444378 --> TAGATTATCAGATCGGTTTTGTTGAAGATAGTTTGACGGTGGTGGCTTCT Raphanus sativus cv GSK3-1
251 - 301
UN19553 --> CGGTGTTTCTGGGATGTTCGCTTGTTCCGTTCTTCTCTTATCTCTTGGCT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- CGTTGTTTCTGGGATGTTCGCTTGTTCCGTTCTTCTCTTATCTCTTGGCT
EX752328 <-- CGGTGTTTCTGGGATGTTCGCTTGTTCCGTTCTTCTCTTATCTCTTGGCT
FD552729 <-- ............................GTTCTTCTCTTATCTCTTGGCT
FD555750 <-- .................................TCTCTTATCTCTTGGCT
FD556411 --> CGGTGTTTCTGGGATGTTCGCTTGTTCCGTTCTTCTCTTATCTCTTGGCT
EX748382 --> CGGTGTTTCTGGGATGTTCGCTTGTTCCGTTCTTCTCTTATCTCTTGGCT
FD560143 --> CGGTGTTTCTGGGATGTTCGCTTGTTCCGTTCTTCTCTTATCTCTTGGCT
FD542896 --> CGTTGTTTCTGGGATGTTCGCTTGTTCCGTTCTTCTCTTATCTCTTGGCT
FY444378 --> CGGTGTTTCTGAGATCTTCGCTTGTTCCGTTCTTCTCTTATCTCTTGGCT
301 - 351
UN19553 --> TTCTCTCGTGGTCTTCAGTATCCTGTATCTTACTCTATAGGATCTGATTT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- TTCTCTCGTGGTCTTCAGTATCCTGTGTCTTACTCTATAGGATCTGATTT
EX752328 <-- TTCTCTCGTGGTCTTCAGTATCCTGTATCTTACTCTATAGGATCTGATTT
FD552729 <-- TTCTCTCGTGGTCTTCAGTATCCTGTATCTTACTCTATAGGATCTGATTT
FD555750 <-- TTCTCTCGTGGTCTTCAGTATCCTGTATCTTACTCTATAGGATCTGATTT
FD556411 --> TTCTCTCGTGGTCTTCAGTATCCTGTATCTTACTCTATAGGATCTGATTT
EX748382 --> TTCTCTCGTGGTCTTCAGTATCCTGTATCTTACTCTATAGGATCTGATTT
FD560143 --> TTCTCTCGTGGTCTTCAGTATCCTGTATCTTACTCTATAGGATCTGATTT
FD542896 --> TTCTCTCGTGGTCTTCAGTATCCTGTGTCTTACTCTATAGGATCTGATTT
FY444378 --> TTCTCTCGTGGTCTTCAGTATCCTGTATCTTACTCTATAGGATCTGATTT
351 - 401
UN19553 --> CTGTTGTGAGATTTGTCTCTCCGATCTGTTTGCATGTTGATGGATGCCTC
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- CTGTTGTGAGATTTGCCTCTTCGATCTGTTTGCATGTTGATGGATGCCTC
EX752328 <-- CTGTTGTGAGATTTGTCTCTCCGATCTGTTTGCATGTTGATGGATGCCTC
FD552729 <-- CTGTTGTGAGATTTGTCTCTCCGATCTGTTTACATGTTGATGGATGCCTC
FD555750 <-- CTGTTGTGAGATTTGTCTCTCCGATCTGTTTGCATGTTGATGGATGCCTC
FD556411 --> CTGTTGTGAGATTTGTCTCTCCGATCTGTTTACATGTTGATGGATGCCTC
EX748382 --> CTGTTGTGAGATTTGTCTCTCCGATCTGTTTGCATGTTGATGGATGCCTC
FD560143 --> CTGTTGTGAGATTTGTCTCTCCGATCTGTTTGCATGTTGATGGATGCCTC
FD542896 --> CTGTTGTGAGATTTGCCTCTTCGATCTGTTTGCATGTTGATGGATGCCTC
FY444378 --> CTGTTGTGAGATTTGTCTCTCCGATCTGTTTGCATGTTGATGGATGCCTC
401 - 451
UN19553 --> TTCTGGTGGATTTACTAAGGCTTGTAAGGTTGTGCTTATCCTTGATTTCG
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- TTCTGGTGGATTTACTAAGGCTTGTAAGGTTGTGCTTATCCTTGATTTCG
EX752328 <-- TTCTGGTGGATTTACTAAGGCTTGTAAGGTTGTGCTTATCCTTGATTTCG
FD552729 <-- TTCTGGTGGATTTACTAAGGCTTGTAAGGTTGTGCTTATCCTTGATTTCG
FD555750 <-- TTCTGGTGGATTTACTAAGGCTTGTAAGGTTGTGCTTATCCTTGATTTCG
FD556411 --> TTCTGGTGGATTTACTAAGGCTTGTAAGGTTGTGCTTATCCTTGATTTCG
EX748382 --> TTCTGGTGGATTTACTAAGGCTTGTAAGGTTGTGCTTATCCTTGATTTCG
FD560143 --> TTCTGGTGGATTTACTAAGGCTTGTAAGGTTGTGCTTATCCTTGATTTCG
FD542896 --> TTCTGGTGGATTTACTAAGGCTTGTAAGGTTGTGCTTATCCTTGATTTCG
FY444378 --> TTCTGGTGGATTTACTAAGGCTTGTAAGGTTGTGCTTATCCTTGATTTCG
451 - 501
UN19553 --> TTTGCGACGGGTCAGATTCAGTTTGCAATCTTCACGGATCCGGCTCGTCT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- TTTGCGACGGGTCAGATTCAGTTTGCAATCTTCACGGATCCGGCTCGTCT
EX752328 <-- TTTGCGACGGGTCAGATTCAGTTTGCAATCTTCACGGATCCGGCTCGTCT
FD552729 <-- TTTGCGACGGGTCAGATTCAGTTTGCAATCTTCACGGATCCGGCTCGTCT
FD555750 <-- TTTGCGACGGGTCAGATTCAGTTTGCAATCTTCACGGATCCGGCTCGTCT
FD556411 --> TTTGCGACGGGTCAGATTCAGTTTGCAATCTTCACGGATCCGGCTCGTCT
EX748382 --> TTTGCGACGGGTCAGATTCAGTTTGCAATCTTCACGGATCCGGCTCGTCT
FD560143 --> TTTGCGACGGGTCAGATTCAGTTTGCAATCTTCACGGATCCGGCTCGTCT
FD542896 --> TTTGCGACGGGTCAGATTCAGTTTGCAATCTTCACGGATCCGGCTCGTCT
FY444378 --> TTTGCGACGGGTCAGATTCAGTTTGCAATCTTCACGGATCCGGCTCGTCT
501 - 551
UN19553 --> TTAAGGATATGGGGCTTCGGCCTTTCTGCATCTTGGCGTGGAGTTTGGAG
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- TTAAGGATATGGGGCTTCGGCCTTTCTGCATCTTGGCGTGGAGTTTGGAG
EX752328 <-- TTAAGGATATGGGGCTTCGGCCTTTCTGCATCTTGGCGTGGAGTTTGGAG
FD552729 <-- TTAAGGATATGGGGCTTCGGCCTTTCTGCATCTTGGCGTGGAGTTTGGAG
FD555750 <-- TTAAGGATATGGGGCTTCGGCCTTTCTGCATCTTGGCGTGGAGTTTGGAG
FD556411 --> TTAAGGATATGGGGCTTCGGCCTTTCTGCATCTTGGCGTGGAGTTTGGAG
EX748382 --> TTAAGGATATGGGGCTTCGGCCTTTCTGCATCTTGGCGTGGAGTTTGGAG
FD560143 --> TTAAGGATATGGGGCTTCGGCCTTTCTGCATCTTGGCGTGGAGTTTGGAG
FD542896 --> TTAAGGATATGGGGCTTCGGCCTTTCTGCATCTTGGCGTGGAGTTTGGAG
FY444378 --> TTAAGGATATGGGGCTTCGGCCTTTCTGCATCTTGGCGTGGAGTTTGGAG
551 - 601
UN19553 --> TGAAAAAAAATGGTCCTCCTCCTCCT---GGGATTATTGTACCTTTGCTT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- TGAAAAAAAATGGTCCTCCTCCTCCT---GGGATTATTGTACCTTTGCTT
EX752328 <-- TGAAAAAAAATGGTCCTCCTCCTCCT---GGGATTATTGTACCTTTGCTT
FD552729 <-- TGAAAAAAAATGGTCCTCCTCCTCCT---GGGATTATT--GCCTTTGCTT
FD555750 <-- TGAAAAAAAATGGTCCTCCTCCTCCTCCTGGGATTATTGTACCTTTGCTT
FD556411 --> TGAAAAAAAATGGTCCTCCTCCTCCT---GGGATTATTG--CCTTTGCTT
EX748382 --> TGAAAAAAAATGGTCCTCCTCCTCCT---GGGATTATTGTACCTTTGCTT
FD560143 --> TGAAAAAAAATGGTCCTCCTCCTCCTCCTGGGATTATTGTACCTTTGCTT
FD542896 --> TGAAAAAAAATGGTCCTCCTCCTCCT---GGGATTATTGTACCTTTGCTT
FY444378 --> TGAAAAAA--TGGTCCTCCTCCTCCT---GGGATTATTGTACCTTTGCTT
601 - 651
UN19553 --> ACTCATGGCTCGTCAGATGGTTTCGGAGCAGTATAATGAGAGGCAGGTCT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- GCTCATGGCTCGTCAGATGGTTTCGGAGCAGTATGTTGAGAGGCAGGTCT
EX752328 <-- ACTCATGGCTCGTCAGATGGTTTCGGAGCAGTATAATGAGAGGCAGGTCT
FD552729 <-- ACTCATGGCTCGTCAGATGGTTTCGGAGCAGTATAATGAGAGGCAGGTCT
FD555750 <-- ACTCATGGCTCGTCAGATGGTTTCGGAGCAGTATAATGAGAGGCAGGTCT
FD556411 --> ACTCATGGCTCGTCAGATGGTTTCGGAGCAGTATAATGAGAGGCAGGTCT
EX748382 --> ACTCATGGCTCGTCAGATGGTTTCGGAGCAGTATAATGAGAGGCAGGTCT
FD560143 --> ACTCATGGCTCGTCAGATGGT.............................
FD542896 --> GCTCATGGCTCGTCAGATGGTTTCGGAGCAGTATGTTGAGAGG.......
FY444378 --> ACTCATGGCTCGTCAGATGGTTTCGGAGCAGTATAATGAGAGGCAGGTCT
651 - 701
UN19553 --> CCCTTAATAAATCTCGTCGATGAATGTGCGCTTACTTCTTCCTTCTTGCC
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- CCCTTAATAAATCTCGTCGATGGATGTGCGCTTACTTCTTCCTTCTTGCC
EX752328 <-- CCCTTAATAAATCTCGTCGATGAATGTGCGCTTACTTCTTCCTTCTTGCC
FD552729 <-- CCCTTAATAAATCTCGTCGATGAATGTGCGCTTACTTCTTCCTTCTTGCC
FD555750 <-- CCCTTAATAAATCTCGTCGATGAATGTGCGCTTACTTCTTCCTTCTTGCC
FD556411 --> CCCTTAATAAATCTCGTCGATGAATGTGCGCTTACTTCTTCCTTCTTGCC
EX748382 --> CCCTTAATAAATCTCGTCGATGA-TGTGCGCTTACTTCTTCCT-C-TGCC
FD560143 --> ..................................................
FD542896 --> ..................................................
FY444378 --> CCCTTAATAAATCTCGTCGATGAATGTGCGTTTACTTCTTCCTTCTTGCC
701 - 751
UN19553 --> TTAGTGGTCCATTTGCTTGGGTGTTTTACTTTTATGATCTAGATTTATTT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- TTAGTGGTCCATTTGCTTGGGTGTTTTACTTTTATGATCTAGATTTATTT
EX752328 <-- TTAGTGGTCCATTTGCTTGGGTGTTTTACTTTTATGATCTAGATTTATTT
FD552729 <-- TTAGTGGTCCATTTGCTTGGGTGTTTTACTTTTATGATCTAGATTTATTT
FD555750 <-- TTAGTGGTCCATTTGCTTGGGTGTTTTACTTTTATGATCTAGATTTATTT
FD556411 --> TTAGTGGTCCATTTGCTTGGGTGTTTTACTTTTA................
EX748382 --> TTAGTGGTC-ATTTGCT-GGGTGTTT-ACTTT-ATGATCTAGATT.....
FD560143 --> ..................................................
FD542896 --> ..................................................
FY444378 --> TTAGTGGTCCATTTGCTTGGGTGTTTTACTTTTATGATCTAGATTTATTT
751 - 801
UN19553 --> TCAGTTTGTACTTTGAACTCTGTTACTTATGTTTAGTTTTAGCTTCCAGA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- TCAGTTTGTACTTTGAACTCTGTTACTTATGTTCTGTTTTAGCTTCCAGA
EX752328 <-- TCAGTTTGTACTTTGAACTCTGTTACTTATGTTTAGTTTTAGCTTCCAGA
FD552729 <-- TCAGTTTGTACTTTGAACTCTGTTACTTATGTTTAGTTTTAGCTTCCAGA
FD555750 <-- TCAGTTTGTACTTTGAACTCTGTTACTTATGTTTAGTTTTAGCTTCCAGA
FD556411 --> ..................................................
EX748382 --> ..................................................
FD560143 --> ..................................................
FD542896 --> ..................................................
FY444378 --> TCAGTTTGTACTTTGAACTCTGTTACTTATGTTCTGTTTTAGCTTCCAGA
801 - 851
UN19553 --> GATTTCAGTTAAATCTGCTGGCCTTTGTTTCCAGAGGATGATCTTGTATC
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- GATTTCAGTTAAATCTGCTGGCCTTTGTTTCCAGAGGATGATCTTGTATC
EX752328 <-- GATTTCAGTTAAATCTGCTGGCCTTTGTTTCCAGAGGATGATCTTGTATC
FD552729 <-- GATTTCAGTTAAATCTGCTGGCCTTTGTTTCCAGAGGATGATCTTGTATC
FD555750 <-- GATTTCAGTTAAATCTGCTGGCCTTTGTTTCCAGAGGATGATCTTGTATC
FD556411 --> ..................................................
EX748382 --> ..................................................
FD560143 --> ..................................................
FD542896 --> ..................................................
FY444378 --> GATTTCAGTTAAATCTGCTGGCCTTTGTTTCCAGAGGATGATCTTGTATC
851 - 901
UN19553 --> CTACTGGCTTAGTTTCTAGGGGTGTTGTTTACTCGCTAGCTTTGGTGTCT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- CTACTGGCTTAGTTTCTAGGGGTATTGTTTACTCGCTAGCTTTGGTGTCT
EX752328 <-- CTACTGGCTTAGTTTCTAGGGGTGTTGTTTACTCGCTAGCTTTGGTGTCC
FD552729 <-- CTACTGGCTTAGTTTCTAGGGGTGTTGTTTACTCGCTAGCTTTGGTGTCT
FD555750 <-- CTACTGGCTTAGTTTCTAGGGGTGTTGTTTACTCGCTAGCTTTGGTGTCT
FD556411 --> ..................................................
EX748382 --> ..................................................
FD560143 --> ..................................................
FD542896 --> ..................................................
FY444378 --> CTACTGGCTTAGTTTCTAGGGGTGTTGTTTACTCGCTAGCTTTGGTGTCT
901 - 951
UN19553 --> TTCCTTGTGTATTACTCTGTTTCTTCATCAATGAAAATAGTCAGTGTTA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538851 <-- TTCCTTGTGTATTACTCTGTTTCTTTATCAATGAAAATAATCAGTGTTt
EX752328 <-- TTCCTTGTGTATTACTCTGTTTCTTCATCAATGAAAATAGTCAGTGTT.
FD552729 <-- TTCCTTGTGTATTACTCTGTTTCTTCATCAATGAAAATAGTCAGTGTT.
FD555750 <-- TTCCTTGTG........................................
FD556411 --> .................................................
EX748382 --> .................................................
FD560143 --> .................................................
FD542896 --> .................................................
FY444378 --> TTCCTTGTGTATTACTCTGTTTCTTCATCAATGAAAATAGTCAGTGTTA
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