Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN19557

               1      -     51
UN19557        --> ATTTCGCAACCTATCCTATCGGAAAGGATATGACTAACGGAGACGGACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- ..................................................
EX761058       <-- ..................................................
EW724377       --> ATTTCGCAACCTATCCTATCGGAAAGGATATGACTAACGGAGACGGACGT
EY924324       --> ..................................................
EY924735       --> ..................................................
EX748833       --> ..................................................
EX757478       --> ..................................................

               51     -    101
UN19557        --> TCAACCGCCGTTACCAACTCCGTAACGGAGAGGAGTTCGCCTCCGTCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- ..................................................
EX761058       <-- ..................................................
EW724377       --> TCAACCGCCGTTACCAACTCCGTAACGGAGAGGAGTTCGCCTCCGTCGTC
EY924324       --> ..................................................
EY924735       --> ..................................................
EX748833       --> ..................................................
EX757478       --> ..................................................

               101    -    151
UN19557        --> TGATCCTCCAATCCGTGTCTACGCAGATGGGATCTACGATCTGTTCCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- ..................................................
EX761058       <-- ..................................................
EW724377       --> TGATCCTCCAATCCGTGTCTACGCAGATGGGATCTACGATCTGTTCCATT
EY924324       --> ..................................................
EY924735       --> ..................................................
EX748833       --> ..................................................
EX757478       --> ..................................................

               151    -    201
UN19557        --> TCGGTCACGCTCGATCTCTCGAACAGGCTAAGAAATCGTTTCCAAACACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- ..................................................
EX761058       <-- ..................................................
EW724377       --> TCGGTCACGCTCGATCTCTCGAACAGGCTAAGAAATCGTTTCCAAACACT
EY924324       --> ..................................................
EY924735       --> ..................................................
EX748833       --> ..................................................
EX757478       --> ..................................................

               201    -    251
UN19557        --> TACCTTCTTGTGGGATGCCGCAACGATGAGACTACTCACAAGTATAAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- ..................................................
EX761058       <-- ..................................................
EW724377       --> TACCTTCTTGTGGGATGCCGCAACGATGAGACTACTCACAAGTATAAGGG
EY924324       --> ..................................................
EY924735       --> ..................................................
EX748833       --> ..................................................
EX757478       --> ..................................................

               251    -    301
UN19557        --> AAAGACGGTGATGAATGATCAAGAACGATATGAATCTCTTCGACATTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- ..................................................
EX761058       <-- ..................................................
EW724377       --> AAAGACGGTGATGAATGATCAAGAACGATATGAATCTCTTCGACATTGCA
EY924324       --> ..................................................
EY924735       --> ..................................................
EX748833       --> ..................................................
EX757478       --> ..................................................

               301    -    351
UN19557        --> AATGGGTGGATGAAGTTATCCCTGATGCACCGTGGGTGATCAACCAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- ..................................................
EX761058       <-- ..................................................
EW724377       --> AATGGGTGGATGAAGTTATCCCTGATGCACCGTGGGTGATCAACCAAGAG
EY924324       --> ..................................................
EY924735       --> ..................................................
EX748833       --> ..................................................
EX757478       --> ..................................................

               351    -    401
UN19557        --> TTTCTTGACAAGCACCGTATTGCCTATGTGGCCCATGATGCTCTTCCGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- ..................................................
EX761058       <-- ..................................................
EW724377       --> TTTCTTGACAAGCACCGTATTGCCTATGTGGCCCATGATGCTCTTCCGTA
EY924324       --> ...................gTGCCTATGTGGCCCATGATGCTCTTCCGTA
EY924735       --> ....................................GATGCTCTTCCGTA
EX748833       --> ..................................................
EX757478       --> ..................................................

               401    -    451
UN19557        --> TGCTGATGCCAGTGGAGCTGGAAAAGATGTCTATGAATTCGTAAAGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- .....................................TTCGTAAAAAAAG
EX761058       <-- ..................................................
EW724377       --> TGCTGATGCCAGTGGAGCTGGAAAAGATGTCTATGAATTCGTAAAAAAAG
EY924324       --> TGCTGATGCCAGTGGAGCTGGAAAAGATGTCTATGAATTCGTAAAGAAAG
EY924735       --> TGCTGATGCCAGTGGAGCTGGAAAAGATGTCTATGAATTCGTAAAGAAAG
EX748833       --> .......................................gGTAAAGAAAG
EX757478       --> ..................................................

               451    -    501
UN19557        --> TCGGGAGGTTCAAGGAGACTAAGAGAACTGAAGGGATATCTACTTCGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- TCGGGAGGTTCAAGGAGAC-AAGAGAACTGAAGGGATATCTACTTCGGAT
EX761058       <-- ..............GAGACTAAGAGAACTGAAGGGATATCTACTTCGGAT
EW724377       --> TCGGGAGGTTCAAGGAGAC-AAGAGAACTGAAGGGATATCTACTTCGGAT
EY924324       --> TCGGGAGGTTCAAGGAGACTAAGAGAACTGAAGGGATATCTACTTCGGAT
EY924735       --> TCGGGAGGTTCAAGGAGACTAAGAGAACTGAAGGGATATCTACTTCGGAT
EX748833       --> T-GGGAGGTTCAAGGAGACTAAGAGAACTGAAGGGATATCTACTTCGGAT
EX757478       --> .............GGAGACTAAGAGAACTGAAGGGATATCTACTTCGGAT

               501    -    551
UN19557        --> ATAATAATGAGGATAGTGAAAGATTATAACCAGTATGTCATGCGTAACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- ATAATAATGAGGATAGTGAAAGATTATAACCAGTATGTCATGCGTAACCT  Raphanus sativus cv Early Scarlet Globe
EX761058       <-- ATAATAATGAGGATAGTGAAAGATTATAACCAGTATGTCATGCGTAACCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW724377       --> ATAATAATGAGGATAGTGAAAGATTATAACCAGTATGTCATGCGTAACCT  Raphanus sativus cv Early Scarlet Globe
EY924324       --> ATCATAATGAGGATAGTGAAAGATTATAACCAGTATGTCATGCGTAACCT  Raphanus raphanistrum subsp. landra
EY924735       --> ATCATAATGAGGATAGTGAAAGATTATAACCAGTATGTCATGCGTAACCT  Raphanus raphanistrum subsp. landra
EX748833       --> ATCATAATGAGGATAGTGAAAGATTATAACCAGTATGTCATGCGTAACCT  Raphanus raphanistrum subsp. maritimus
EX757478       --> ATAATAATGAGGATAGTGAAAGATTATAACCAGTATGTCATGCGTAACCT  Raphanus raphanistrum subsp. raphanistrum (MS)

               551    -    601
UN19557        --> TGACAGGGGATACTCAAGGGAGGATCTTGGAGTTAGCTTTGTCAAAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- TGACAGGGGATACTCAAGGGAGGATCTTGGAGTTAGCTTTGTCAAAGAAA
EX761058       <-- TGACAGGGGATACTCAAGGGAGGATCTTGGAGTTAGCTTTGTCAAAGAAA
EW724377       --> TGACAGGGGATACTCAAGGGAGGATCTTGGAGTTAGCTTTGTCAAAGAAA
EY924324       --> TGACAGGGGATACTCAAGGGAGGATCTTGGAGTTAGCTTTGTCAAAGAAA
EY924735       --> TGACAGGGGATACTCAAGGGAGGATCTTGGAGTTAGCTTTGTCAAAGAAA
EX748833       --> TGACAGGGGATACTCAAGGGAGGATCTTGGAGTTAGCTTTGTCAAAGAAA
EX757478       --> TGACAGGGGATACTCAAGGGAGGATCTTGGAGTTAGCTTTGTCAAAGAAA

               601    -    651
UN19557        --> AGAGACTTCGAGTTAATATGAGGCTGAAGAAACTTCAGGAGAAGGTCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- AGAGACTTCGAGTTAATATGAGGCTGAAGAAACTTCAGGAGAAGGTCAAA
EX761058       <-- AGAGACTTCGAGTTAATATGAGGCTGAAGAAACTTCAGGAGAAGGTCAAA
EW724377       --> AGAGACTTCGAGTTAATATGAGGCTGAAGAAACTTCAGGAGAAGGTCAAA
EY924324       --> AGAGACTTCGAGTTAATATGAGGCTGAAGAAACTTCAGGAGAAGGTCAAA
EY924735       --> AGAGACTTCGAGTTAATATGAGGCTGAAGAAACTTCAGGAGAAGGTCAAA
EX748833       --> AGAGACTTCGAGTTAATATGAGGCTGAAGAAACTTCAGGAGAAGGTCAAA
EX757478       --> AGAGACTTCGAGTTAATATGAGGCTGAAGAAACTTCAGGAGAAGGTCAAA

               651    -    701
UN19557        --> GAACAACAAGAAAAAGTTGGGGAAAAGATGCAAACTGTGAAAATGGTACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- GAACAACAAGAAAAAGTTGGGGAAAAGATGCAAACTGTGAAAATGGTACG
EX761058       <-- GAACAACAAGAAAAAGTTGGGGAAAAGATGCAAACTGTGAAAATGGTACG
EW724377       --> GAACAACAAGAAAAAGTTGGGGAAAAGATGCAAACTGTGAAAATGGTACG
EY924324       --> GAACAACAAGAAAAAGTTGGGGAAAAGATGCAAACTGTGAAAATGGTACG
EY924735       --> GAACAACAAGAAAAAGTTGGGGAAAAGATGCAAACTGTGAAAATGGTACG
EX748833       --> GAACAACAAGAAAAAGTTGGGGAAAAGGTGCAAACTGTGAAAATGGTACG
EX757478       --> GAACAACAAGAAAAAGTTGGGGAAAAGATGCAAACTGTGAAAATGGTACG

               701    -    751
UN19557        --> TAATGAGTGGGTGGAGAATGCAGATCGTTGGGTAGC-TGGATTCCTTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- TAATGAGTGGGTGGAGAATGCAGATCGTTGGGTAGC-TGGATTCCTTGAA
EX761058       <-- TAATGAGTGGGTGGAGAATGCAGATCGTTGGGTAGC-TGGATTCCTTGAA
EW724377       --> TAATGAGTGGGTGGAGAATGCAGATCGTTGGGTAGCCTGGATTCCTTGAA
EY924324       --> TAATGAGTGGGTGGAGAATGCAGATCGTTGGGTAGC-TGGATTCCTTGAA
EY924735       --> TAATGAGTGGGTGGAGAATGCAGATCGTTGGGTAGC-TGGATTCCTTGAA
EX748833       --> TA-TGAGTGGGTGGAGAATGCAGATCGTTGGGTAGC-TGGATTCCTTGAA
EX757478       --> TAATGAGTGGGTGGAGAATGCAGATCGTTGGGTAGC-TGGATTCCTTGAA

               751    -    801
UN19557        --> ATGTTTGAAGAAGGCTGCCATAAGATGGGAACTGCCATCAGAGACCGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- ATGTTTGAAGAAGGCTGCCATAAGATGGGAACTGCCATCAGAGACCGAAT
EX761058       <-- ATGTTTGAAGAAGGCTGCCATAAGATGGGAACTGCCATCAGAGACCGAAT
EW724377       --> ATGTTTGA..........................................
EY924324       --> ATGTTTGAAGAAGGCTGCCATAAGATGGGAACTGCCATCAGAGACCGAAT
EY924735       --> ATGTTTGAAGAAGGCTGCCATAAGATGGGAACTGCCATCAGAGACCGAAT
EX748833       --> ATGTTTGAAGAAGGCTGCCATAAGATGGGAACTGCCATCAGAGACCGAAT
EX757478       --> ATGTTTGAAGAAGGCTGCCATAAGATGGGAACTGCCATCAGAGACCGAAT

               801    -    851
UN19557        --> CCAAGAGAAGTTAATGCGACAAGAGTCCAAAGAATTGCTCGAGAAGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- CCAAGAGAAGTTAGTGCGACAAGAGTCCAAAGAATTGCTCGAGAAGGATC
EX761058       <-- CCAAGAGAAGTTAATACGACAAGAGTCCAAAGAATTGCTCGAGAAGGATC
EW724377       --> ..................................................
EY924324       --> CCAAGAGAAGTTAATGCGACAAGAGTCCAAAGAATTGCTCGAGAAGGATC
EY924735       --> CCAAGAGAAGTTAATGCGACAAGAGTCCAAAGAATTGCTCGAGAAGGATC
EX748833       --> CCAAGAGAAGTTAATGCGACAAGAGTCCAAAGAATTGCTCGAGAAGGATC
EX757478       --> CCAAGAGAAGTTAATACGACAAGAGTCCAAAGAATTGCTCGAGAAGGATC

               851    -    901
UN19557        --> AAATCGGTCAGCATAAAGACACAGAGGAACAGTTCTATGAAGAATATTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- AAAACGGTCAGCATAAAGACACAGAGGAACAGTTCTATGAAGAATATTTC  Raphanus sativus cv Early Scarlet Globe
EX761058       <-- AAAACGGTCAGCATAAAGACACAGAGGAACAGTTCTATGAAGAATATTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW724377       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY924324       --> AAATCGGTCAGCATAAAGACACAGAGGAACAGTTCTATGAAGAATATTTC  Raphanus raphanistrum subsp. landra
EY924735       --> AAATCGGTCAGCATAAAGACACAGAGGAACAGTTCTATGAAGAATATTTC  Raphanus raphanistrum subsp. landra
EX748833       --> AAATCGGTCAGCATAAAGACACAGAGGAACAGTTCTATGAAGAATATTTC  Raphanus raphanistrum subsp. maritimus
EX757478       --> AAAACGGTCAGCATAAAGACACAGAGGAACAGTTCTATGAAGAATATTTC  Raphanus raphanistrum subsp. raphanistrum (MS)

               901    -    951
UN19557        --> GAGCATGACATTGTTGACAGCTGTGAAGACGATGAAGAAGAGTACCATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- GAGCATGACATTGTTGACAGCTGTGAAGACGATGAAGAAGAGTACCATGA
EX761058       <-- GAGCATGACATTGTTGACAGCTGTGAAGACGATGAAGAAGAGTACCATGA
EW724377       --> ..................................................
EY924324       --> GAGCATGACATTGTTGACAGCTGTGAAGACGATGAAGAAGAGTACCATGA
EY924735       --> GAGCATGACATTGTTGACAGCTGTGAAGACGATGAAGAAGAGTACCATGA
EX748833       --> GAGCATGACATTGTTGACAGCTGTGAAGACGATGAAGAAGAGTACCATGA
EX757478       --> GAGCATGACATTGTTGACAGCTGTGAAGACGATGAAGAAGAGTACCATGA

               951    -   1001
UN19557        --> CGAGATTCAAGAGCAATGTAGTGCCTCAAAAGCCATAAAAAGTAACTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- CGAGATTCAAGAGCAATGTAGTGCCTCAAAAGCCATAAAAAGTAACTAGA
EX761058       <-- CGAGATTCAAGAGCAATGTAGTGCCTCAAAAGCCATAAAAAGTAACTAGA
EW724377       --> ..................................................
EY924324       --> TGAGATTCAAGAGCAATGTAGTGCCTCAAAAGCCATAAAAA.........
EY924735       --> TGAGATTCAAGAGCAATGTAGTGCCTCAAAAGCCATAAAAAGTAACTAGA
EX748833       --> CGAGATTCAAGAGCAATGTAGTGCCTCAAAAGCCATAAAAAGTAACTAGA
EX757478       --> CGAGATTCAAGAGCAATGTAGTGCCTCAAAAGCCATAAAAAGTAACTAGA

               1001   -   1051
UN19557        --> GGAACACAAATTTATGTTGTTTTAGTGCCTATTGTTCAATACTTTTGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- GGAACACAAATTTATGTTGTTTTAGTGCCTATTGTTCAATACTTTTGCAG
EX761058       <-- GGA-----ACACTATGTTGTTTTAGTGCCTATTGTTCAATACTTTTGCAG
EW724377       --> ..................................................
EY924324       --> ..................................................
EY924735       --> GGAACACAAATTTATGTTGTTTTAGTGCCTATT--TCAATACTTTTGCAG
EX748833       --> GGAACACAAATTTATGTTGTTTTAGTGCCTATTGTTCAATACTTTTGCAG
EX757478       --> GGAACAC-----TATGTTGTTTTAGTGCCTATTGTTCAATACTTTTGCAG

               1051   -   1101
UN19557        --> TAAAATGCTTATCAAATGACTTATTAGTTAGCTATAAAAGTTTAGAAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- TAAAATGCTTATCAAATGACTTATTAGTTAGCTATAAAAGTTTAGAAAAT
EX761058       <-- TAAAATGCTTATCAAATGACTTATTAGTTAGCTATAAAAGTTTAGAAAAT
EW724377       --> ..................................................
EY924324       --> ..................................................
EY924735       --> TAAAATGCTTATCAAATGACTTACTTGTTAGCTATAAA-GTTTA......
EX748833       --> TAAAATGCTTATCAAATGACTTACTTGTTAGCTATAAAAGTTTAGAAAAT
EX757478       --> TAAAATGCTTATCAAATGACTTATTAGTTAGCTATAAA-GTTTAGAAAAT

               1101   -   1151
UN19557        --> GTTTGTGTGCTTTATTTTCTTATACACGCAATCTTTTTGCCCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729114       <-- GTTTGTGTGATTTATTTTCTTATACACGCAATCTTTTTGCCCCC
EX761058       <-- GTTTGTGTGCTTTATTTTTTTATACA..................
EW724377       --> ............................................
EY924324       --> ............................................
EY924735       --> ............................................
EX748833       --> GTTTGTGTGATTTATTTTCTTATACACGCAATCTTTTTGC....
EX757478       --> GTTTGTGTGCTTTATTTTCTTATACACGCAATCTTTTTGCCaaa