1      -     51
UN19637        --> GATTGACTATCATACTGGAGTGTTTGCAAGCAAAATCACTCCAGCGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- ..................................................
FD544687       <-- ..................................................
EW738488       <-- ..................................................
EX775904       <-- ..................................................
EW718927       <-- ..................................................
FD968181       <-- ..................................................
FD553110       <-- ..................................................
EW734774       --> GATTGACTATCATACTGGAGTGTTTGCAAGCAAAATCACTCCAGCGAAAG
FD972266       --> .........gCATACTGGAGTGTTTGCAAGCAAAATCACTCCAGCGAAAG
EY916347       --> ..................................................
EX771820       --> ..................................................
EW714772       --> ..................................................
FD556887       --> ..................................................

               51     -    101
UN19637        --> ATGGAAGACCAGTGATGATTGAGCTGATTGATGCCAAAACCAAGGCACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- ..................................................
FD544687       <-- ..................................................
EW738488       <-- ..................................................
EX775904       <-- ..................................................
EW718927       <-- ..................................................
FD968181       <-- ..................................................
FD553110       <-- ..................................................
EW734774       --> ATGGAAGACCAGTGATGATTGAGCTGATTGATGCCAAAACCAAGGCACCC
FD972266       --> ATAGAAGACCAGTGATGATTGAGCTGATTGATGCCAAAACCAAGGCACCC
EY916347       --> .........................................gAGGCACCC
EX771820       --> ..................................................
EW714772       --> ..................................................
FD556887       --> ..................................................

               101    -    151
UN19637        --> AAAGATACTTTGGAGGTGGACACTGCTCTTATTGCTACAGGAAGAGCCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- ..................................................
FD544687       <-- ..................................................
EW738488       <-- ..................................................
EX775904       <-- ..................................................
EW718927       <-- ..................................................
FD968181       <-- ..................................................
FD553110       <-- ..................................................
EW734774       --> AAAGATACTTTGGAGGTGGACACTGCTCTTATTGCTACAGGAAGAGCCCC
FD972266       --> AAAGATACTTTGGAGGTGGACACTGCTCTTATTGCTACAGGAAGAGCCCC
EY916347       --> AAAGATACTTTGTAGGTGGACACTGCTCTTATTGCTACAGGAAGAGCCCC
EX771820       --> ..................................................
EW714772       --> ..................................................
FD556887       --> ..................................................

               151    -    201
UN19637        --> CTTCACCAATGGTCTTGGCCTGGAAAACATCAATGTAGCTACGCAGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- ......CAATGGTCTTGGCCTGGAAAACATCAATGTAGC-ACGCAGAGAG
FD544687       <-- ...........................CATCAATGTAGCTACGCAGAGAG
EW738488       <-- ............................ATCAATGTAGCTACGCAGATAG
EX775904       <-- ..................................................
EW718927       <-- ..................................................
FD968181       <-- ..................................................
FD553110       <-- ..................................................
EW734774       --> CTTCACCAATGGTCTTGGCCTGGAAAACATCAATGTAGCTACGCAGATAG
FD972266       --> ATTCACCAATGGTCTTGGCCTGGAAAACATCAATGTAGCGACACAAAGAG
EY916347       --> CTTCACCAATGGTCTTGGCCTGGAAAACATCAATGTAGCTACGCAGAGAG
EX771820       --> ..................................................
EW714772       --> ..................................................
FD556887       --> ..................................................

               201    -    251
UN19637        --> GTTTTATACCAGTTGATGAGCGAATGCGTGTTATCGATGGAAATGGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- GTTTTATACCAGTTGATGAGTGAATGCGTGTTATCGATGGAAATGGAAAG
FD544687       <-- GTTTTATACCAGTTGATGAGCGAATGCGTGTTATCGATGGAAATGGAAAG
EW738488       <-- GTTTTATACCAGTTGATGAGCGAATGCGTGTTATCGATGGAAATGGAAAG
EX775904       <-- ....................gGAATGCGTGTTATCGATGGAAATGGAAAG
EW718927       <-- ..................................................
FD968181       <-- ..................................................
FD553110       <-- ..................................................
EW734774       --> GTTTTATACCAGTTGATGAGCGAATGCGTGTTATCGATGGAAATGGAAAG
FD972266       --> GTTTCATACCAGTTGATGAGAGAATGCGTGTTATCGATGGAAATGGAAAG
EY916347       --> GTTTTATACCAGTTGATGAGCGAATGCGTGTTATCGATGGAAATGGAAAG
EX771820       --> ....................gGAATGCGTGTTATCGATGGAAATGGAAAG
EW714772       --> ..................................................
FD556887       --> ..................................................

               251    -    301
UN19637        --> CTGGTTCCGCACTTGTACTGCATCGGTGATGCCAATGGGAAGCTGATGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- CTGGTTCCGCACTTGTACTGCATCGGTGATGCCAATGGGAAGCTGATGCT  Raphanus sativus var. oleiformis
FD544687       <-- CTGGTTCCGCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738488       <-- CTGGTTCCGCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCT  Raphanus sativus cv Rat-Tail Radish #3870
EX775904       <-- CTGGTTCCGCACTTGTACTGCATCGGTGATGCCAATGGGAAGCTGATGCT  Raphanus raphanistrum subsp. landra
EW718927       <-- ...................................gGGGAAGCTGATGCT  Raphanus sativus var. oleiformis
FD968181       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553110       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW734774       --> CTGGTTCCGCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCT  Raphanus sativus cv Rat-Tail Radish #3870
FD972266       --> CTGGTTCCACACTTGTACTGCATCGGTGATGCCAATGGGAAACTGATGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916347       --> CTGGTTCCGCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX771820       --> CTGGTTCCGCACTTGTACTGCATCGGTGATGCCAATGGGAAGCTGATGCT  Raphanus raphanistrum subsp. landra
EW714772       --> ...................................gGGGAAGCTGATGCT  Raphanus sativus var. oleiformis
FD556887       --> ..................................................  Raphanus raphanistrum subsp. landra

               301    -    351
UN19637        --> TGCTCATGCAGCCAGTGCCCAAGGAATTTCTGTGGTGGAGCAAGTCACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- TGCTCATGCAGCCAGTGCCCAAGGAATTTCTGTGGTGGAGCAAGTCACAG  Raphanus sativus var. oleiformis
FD544687       <-- TGCTCATGCAGCCAGTGCCCAAGGAATTTCTGTGGTGGAGCAAGTAACAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738488       <-- TGCTCATGCAGCCAGTGCCCAAGGAATTTCTGTGGTGGAGCAAGTAACAG  Raphanus sativus cv Rat-Tail Radish #3870
EX775904       <-- TGCTCATGCAGCCAGTGCCCAAGGAATTTCTGTGGTGGAGCAAGTCACAG  Raphanus raphanistrum subsp. landra
EW718927       <-- TGCTCATGCAGCCAGTGCCCAAGGAATTTCTGTGGTGGAGCAAGTCACAG  Raphanus sativus var. oleiformis
FD968181       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553110       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW734774       --> TGCTCATGCAGCCAGTGCCCAAGGAATTTCTGTGGTGGAGCAAGTAACAG  Raphanus sativus cv Rat-Tail Radish #3870
FD972266       --> TGCTCATGCAGCCAGTGCCCAAGGAATTTCTGTGGTGGAGCAAGTCACAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916347       --> TGCTCATGCAGCCAGTGCCCAAGGAATTTCTGTGGTGGAGCAAGTAACAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX771820       --> TGCTCATGCAGCCAGTGCCCAAGGAATTTCTGTGGTGGAGCAAGTCACAG  Raphanus raphanistrum subsp. landra
EW714772       --> TGCTCATGCAGCCAGTGCCCAAGGAATTTCTGTGGTGGAGCAAGTCACAG  Raphanus sativus var. oleiformis
FD556887       --> ..................................................  Raphanus raphanistrum subsp. landra

               351    -    401
UN19637        --> GTAGAGATCATGTGCTGAATCATCTTAGCATCCCAGCCGCTTGTTTTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- GTAGAGATCATGTGCTGAATCATCTTAGCATCCCAGCCGCTTGTTTTACT
FD544687       <-- GTAGAGATCATGTGCTGAATCATCTTAGCATCCCAGCCGCTTGTTTTACT
EW738488       <-- GTAGAGATCATGTGCTGAATCATCTTAGCATCCCAGCCGCTTGTTTTACT
EX775904       <-- GTAGAGATCATGTGCTGAATCATCTTAGCATCCCAGCCGCTTGTTTTACT
EW718927       <-- GTAGAGATCATGTGCTGAATCATCTTAGCATCCCAGCCGCTTGTTTTACT
FD968181       <-- ..................................................
FD553110       <-- ..................................................
EW734774       --> GTAGAGATCATGTGCTGAATCATCTTAGCATCCCAGCCGCTTGTTTTACT
FD972266       --> GTAGAGATCATGTGCTGAATCATCTTAGCATCCCAGCCGCTTGTTTTACT
EY916347       --> GTAGAGATCATGTGCTGAATCATCTTAGCATCCCAGCCGCTTGTTTTACT
EX771820       --> GTAGAGATCATGTGCTGAATCATCTTAGCATCCCAGCCGCTTGTTTTACT
EW714772       --> GTAGAGATCATGTGCTGAATCATCTTAGCATCCCAGCCGCTTGTTTTACT
FD556887       --> ..................................................

               401    -    451
UN19637        --> CATCCTGAAATCAGCATGGTGGGATTCACAGAGCCTCAAGCGAGAGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- CATCCTGAAATCAGCATGGTGGGATTGACAGAGCCTCAAGCGAGAGAGAA  Raphanus sativus var. oleiformis
FD544687       <-- CATCCTGAAATCGGCATGGTGGGATTCACAGAGCCTCAAGCGAGAGAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738488       <-- CATCCTGAAATCAGCATGGTGGGATTCACAGAGCCTCAAGCGAGAGAGAA  Raphanus sativus cv Rat-Tail Radish #3870
EX775904       <-- CATCCTGAAATCAGCATGGTGGGATTGACAGAGCCTCAAGCGAGAGAGAA  Raphanus raphanistrum subsp. landra
EW718927       <-- CATCCTGAAATCAGCATGGTGGGATTGACAGAGCCTCAAGCGAGAGAGAA  Raphanus sativus var. oleiformis
FD968181       <-- ...................TGGGATTCACAGAGCCTCAAGCGAGAGAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553110       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW734774       --> CATCCTGAAATCAGCATGGTGGGATTCACAGAGCCTCAAGCGAGAGAGAA  Raphanus sativus cv Rat-Tail Radish #3870
FD972266       --> CATCCTGAAATCAGCATGGTGGGATTCACAGAGCCTCAAGCGAGAGAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916347       --> CATCCTGAAATCAGCATGGTGGGATTCACAGAGCCTCAAGCGAGAGAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX771820       --> CATCCTGAAATCAGCATGGTGGGATTGACAGAGCCTCAAGCGAGAGAGAA  Raphanus raphanistrum subsp. landra
EW714772       --> CATCCTGAAATCAGCATGGTGGGATTGACAGAGCCTCAAGCGAGAGAGAA  Raphanus sativus var. oleiformis
FD556887       --> ..................................................  Raphanus raphanistrum subsp. landra

               451    -    501
UN19637        --> AGCTGAGAAAGAGGGATTTAAAGTAAGTATTGCCAAGACAAGTTTCAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- AGCTGAGAAGGAGGGATTTAAAGTAAGTATTGCCAAGACAAGTTTCAAGG  Raphanus sativus var. oleiformis
FD544687       <-- AGCTGAGAAAGAGGGATTTAAAGTAAGTGTTGCCAAGACAAGTTTCAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738488       <-- AGCTGAGAAAGAGGGATTTAAAGTAAGTGTTGCCAAGACAAGTTTCAAGG  Raphanus sativus cv Rat-Tail Radish #3870
EX775904       <-- AGCTGAGAAAGAGGGATTTAAAGTAAGTATTGCCAAGACAAGTTTCAAGG  Raphanus raphanistrum subsp. landra
EW718927       <-- AGCTGAGAAAGAG-TATTTAAAGTAAGTATTGCCAAGACAAGTTTCAAGG  Raphanus sativus var. oleiformis
FD968181       <-- AGCTGAGAAAGAGGGGTTTAAAGTAAGTATTGCCAAGACAAGTTTCAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553110       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW734774       --> AGCTGAGAAAGAGGGATTTAAAGTAAGTGTTGCCAAGACAAGTTTCAAGG  Raphanus sativus cv Rat-Tail Radish #3870
FD972266       --> AGCTGAGAAAGAGGGGTTTAAAGTAAGTATTGCCAAGACAAGTTTCAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916347       --> AGCTGAGAAAGAGGGATTTAAAGTAAGTGTTGCCAAGACAAGTTTCAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX771820       --> AGCTGAGAAAGAGGGATTTAAAGTAAGTATTGCCAAGACAAGTTTCAAGG  Raphanus raphanistrum subsp. landra
EW714772       --> AGCTGAGAAAGAG-TATTTAAAGTAAGTATTGCCAAGACAAGTTTCAAGG  Raphanus sativus var. oleiformis
FD556887       --> ..................................................  Raphanus raphanistrum subsp. landra

               501    -    551
UN19637        --> CAAACACAAAGGCTCTTGCCGAAAATGAGGGTGAAGGACTCGCTAAGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- CAAACACAAAGGCTCTTTCCGAAAATGAGGGTGAAGGACTCGCTAAGATG
FD544687       <-- CAAACACAAAGGCCCTTGCCGAAAATGAGGGTGAAGGACTCGCTAAGATG
EW738488       <-- CAAACACAAAGGCTCTTGCCGAAAATGAGGGTGAAGGACTCGCTAAGATG
EX775904       <-- CAAACACAAAGGCTCTTGCCGAAAATGAGGGTGAAGGACTCGCTAAGATG
EW718927       <-- CAAACACAAAGGCTCTTGCCGAAAATGAGGGTGAAGGACTCGCTAAGATG
FD968181       <-- CAAACACAAAGGCTCTAGCCGAAAATGAGGGTGAAGGACTCGCTAAGATG
FD553110       <-- ..................................................
EW734774       --> CAAACACAAAGGCTCTTGCCGAAAATGAGGGTGAAGGACTCGCTAAGATG
FD972266       --> CAAACACAAAGGCTCTAGCCGAAAATGAGGGTGAAGGACTCGCTAAGATG
EY916347       --> CAAACACAAAGGCTCTTGCCGAAAATGAGGGTGAAGGACTCGCTAAGATG
EX771820       --> CAAACACAAAGGCTCTTGCCGAAAATGAGGGTGAAGGACTCGCTAAGATG
EW714772       --> CAAACACAAAGGCTCTTGCCGAAAATGAGGGTGAAGGACTCGCTAAGATG
FD556887       --> ..................................................

               551    -    601
UN19637        --> ATATACAGACCTGACAATGGTGAAATCCTAGGAGTTCATATCTTTGGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- ATATACAGACCTGACAATGGTGAAATCCTAGGAGTTCATATCTTTGGGTT  Raphanus sativus var. oleiformis
FD544687       <-- ATATACAGACCTGACAATGGTGAAATCCTAGGAGTTCATATTTTCGGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738488       <-- ATATACAGACCTGACAATGGTGAAATCCTAGGAGTTCATTTCTTCGGGTT  Raphanus sativus cv Rat-Tail Radish #3870
EX775904       <-- ATATACAGACCTGACAATGGTGAAATCCTAGGAGTTCATATCTTTGGGTT  Raphanus raphanistrum subsp. landra
EW718927       <-- ATATACAGACCTGACAATGGTGAAATCCTAGGAGTTCATATCTTTGGGTT  Raphanus sativus var. oleiformis
FD968181       <-- ATATACAGACCTGACAATGGTGAAATCCTAGGAGTTCATATCTTCGGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553110       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW734774       --> ATATACAGACCTGACAATGGTGAAATCCTAG-AGTTCATATCTTCGGGTT  Raphanus sativus cv Rat-Tail Radish #3870
FD972266       --> ATATACAGACCTGACAATGGTGAAATCCTAGGAGTTCATATCTTCGGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916347       --> ATATACAGACCTGACAATGGTGAAATCCTAGGAGTTCATATCTTCGGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX771820       --> ATATACAGACCTGACAATGGTGAAATCCTAGGAGTTCATATCTTTGGGTT  Raphanus raphanistrum subsp. landra
EW714772       --> ATATACAGACCTGACAATGGTGAAATCCTAGGAGTTCATATCTTTGGGTT  Raphanus sativus var. oleiformis
FD556887       --> ..................................................  Raphanus raphanistrum subsp. landra

               601    -    651
UN19637        --> GCATGCAGCTGATCTTATCCATGAAGCATCCAACGCCATCGCATTGGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- GCATGCAGCTGATTTCATCCATGAAGCATCCAACGCCATCGCGTTGGGAA  Raphanus sativus var. oleiformis
FD544687       <-- GCATGCAGCTGATTTTATCCATGAAGCATCCAACGCCATCGCATTGGGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738488       <-- GCATGCAGCTGATCTTATCCATGAAGCATCCAACGCCATCGCATTGGGAA  Raphanus sativus cv Rat-Tail Radish #3870
EX775904       <-- GCATGCAGCTGATTTCATCCATGAAGCATCCAACGCCATCGCGTTGGGAA  Raphanus raphanistrum subsp. landra
EW718927       <-- GCATGCAGCTGATTTCATCCATGAAGCATCCAACGCCATCGCGTTGGGAA  Raphanus sativus var. oleiformis
FD968181       <-- GCATGCAGCTGATCTTATCCAT-AAGCATCCAACGCCATCGCATTGGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553110       <-- ................................gCGCCATCGCATTGGGAA  Raphanus raphanistrum subsp. landra
EW734774       --> GCATGCAGCTGATCTTATCCATGAAGCATCCAACGCCATCGCATTGGGAA  Raphanus sativus cv Rat-Tail Radish #3870
FD972266       --> GCATGCAGCTGATCTTATCCAT-AAGCATCCAACGCCATCGCATTGGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916347       --> GCATGCAGCTGATCTTATCCATGAAGCATCCAACGCCATCGCATTGGGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX771820       --> GCATGCAGCTGATCTCATCCATGAAGCATCCAACGCCATCGCGTTGGGAA  Raphanus raphanistrum subsp. landra
EW714772       --> GCATGCAGCTGATCTCATCCATGAAGCATCCAACGCCATCGCGTTGGGAA  Raphanus sativus var. oleiformis
FD556887       --> ................................gCGCCATCGCATTGGGAA  Raphanus raphanistrum subsp. landra

               651    -    701
UN19637        --> CACGCATTCAGGACATAAAACTTGCAGTTCATGCACATCCAACTTTATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- CACGCATTCAGGACATAAAACTTGCAGTTCATGCACATCCAACTTTATCT  Raphanus sativus var. oleiformis
FD544687       <-- CACGCATTCAGGACATAAAACTTGCAGTTCATGCACATCCAACTTTATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738488       <-- CACGCATTCAGGACATAAAACTTGCAGTTCATGCACATCCAACTTTATCT  Raphanus sativus cv Rat-Tail Radish #3870
EX775904       <-- CACGCATTCAGGACATAAAACTTGCAGTTCATGCACATCCAACTTTGTCT  Raphanus raphanistrum subsp. landra
EW718927       <-- CACGCATTCAGGACATAAAACTTGCAGTTCATGCACATCCAACTTTATCT  Raphanus sativus var. oleiformis
FD968181       <-- CACGCATTCAGGACATAAAACTTGCAGTTCATGCACATCCAACTTTGTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553110       <-- CACGCATTCAGGACATAAAACTTGCAGTTCATGCACATCCAACTTTATCT  Raphanus raphanistrum subsp. landra
EW734774       --> CACGCATTCAG-ACATAAAACTTGCAGTTCATGCACATCCA-CTTTATCT  Raphanus sativus cv Rat-Tail Radish #3870
FD972266       --> CACGCATTCAG-ACATAAAACTTGCAGTTCATGCACATCCAACTTTGTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916347       --> CACGCATTCAAGACATAAAACTTGCAGTTCATGCACATCCAACTTTATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX771820       --> CACGCATTCAGGACATAAAACTTGCAGTTCATGCACATCCAACTTTGTCT  Raphanus raphanistrum subsp. landra
EW714772       --> CACGCATTCAGGACATAAAACTTGCAGTTCATGCACATCCAACTTTATCT  Raphanus sativus var. oleiformis
FD556887       --> CACGCATTCAGGACATAAAACTTGCAGTTCATGCACATCCAACTTTATCT  Raphanus raphanistrum subsp. landra

               701    -    751
UN19637        --> GAAGTTGTAGACGAACTGTTTAAAGCAGCTAAGGTCGAAAGTCCAGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- GAAGTTGTAGACGAACTGTTTAAAGCAGCTAAGGTCGAAAGTCCAGCTTC
FD544687       <-- GAAGTTGTAGACGAACTATTTAAAGCAGCTAAGGTCGAAAGTCCAGCTTC
EW738488       <-- GAAGTTGTAGACGAACTGTTTAAAGCAGCTAAGGTCGAAAGTCCAGCTTC
EX775904       <-- GAAGTTGTAGACGAACTGTTTAAAGCAGCTAAGGTCGAAAGTCCAGCTTC
EW718927       <-- GAAGTTGTAGACGAACTGTTTAAAGCAGCTAAGGTCGAAAGTCCAGCTTC
FD968181       <-- GAAGTTGTAGACGAACTGTTTAAAGCAGCTAAGGTCGAAAGTCCAGCTTC
FD553110       <-- GAAGTTGTAGACGAACTGTTTAAAGCAGCTAAG-TCGAAAGTCCAGCTTC
EW734774       --> GA-G-TGTAGACGA-CTGTTTAAAGCAGCTAAGt................
FD972266       --> GAAGTTGTAGACGAACTGTTTAAAGCAGCTAAAGTCGAAAGTCCAGCTTC
EY916347       --> GAAGTTGTAGACGAACTGTTTAAAGCAGCTAAAGTCGAAAGTCCAGCTTC
EX771820       --> GAAGTTGTAGACGAACTGTTTAAAGCAGCTAAGGTCGAAAGTCCAGCTTC
EW714772       --> GAAGTTGTAGACGAACTGTTTAAAGCAGCTAAGGTCGAAAGTCCAGCTTC
FD556887       --> GAAGTTGTAGACGAACTGTTTAAAGCAGCTAAG-TCGAAAGTCCAGCTTC

               751    -    801
UN19637        --> AACAACGCCACAAAGTGTAAAAGCTGCTGTATAAACAGAATCTTGAGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- AACAACGCCACAAAGTGTAAAAGCTGCTGTATAAACAGAATCTTGAGATC
FD544687       <-- AACAACGCCACAAAGTGTAAAAGCTGCTGTATAAACAGAATCTTGAGATC
EW738488       <-- AACAACGCCACAAAGTGTAAAAGCTGCTGTATAAACAGAATCTTGAGTTC
EX775904       <-- AACAACGCCACAAAGTGTAAAAGCTGCTGTATAAACAGAATCTTGAGATC
EW718927       <-- GACAACGCCACAAAGTGTAAAAGCTGCTGTATAAACAGAATCTTGAGATC
FD968181       <-- AACAACGCCACAAAGTGTAAAAGCTGCTTTATAAACAGAATCTTGAGATC
FD553110       <-- AACAACGCCACAAAGTGTAAAAGCTGCTGTATAAACAGAATCTTGAGATC
EW734774       --> ..................................................
FD972266       --> A-CAACGCCACAAAGTGTAAA-GCTGCTTTATAA................
EY916347       --> AACAACGCCACAAAGTGTAAAAGCTGCTGTATAAACAGA...........
EX771820       --> AACAACGCCACAAAGTGTAAAAGCTGCTGTATAAACAGAATCTTGAGATC
EW714772       --> GACAACGCCACAAAGTGTAAAAGCTGCTGTATAAACAGAATCTTGAGATC
FD556887       --> AACAACGCCACAAAGTGTAAAAGCTGCTGTATAAACAGAATCTTGAGATC

               801    -    851
UN19637        --> AACAGCCTGTAACAAAAGTTTTGTGTTCCAAGACATTTGTGCTTTAGCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- AACAGCCTGTAACAAAAGTTTTGTGTTCCAAGACATTTGTGCTTTAGCGA
FD544687       <-- AACAGCCTGTAACAAAAGTTTTGTGTTCCAAGACATTTGTGCTTTAGCGA
EW738488       <-- AACAGCCTGTAACAAAAGTTTTGTGTTCCAAGACATTTGTGCTTTAGC..
EX775904       <-- AACAACCTGTAACAAAAGTTTTGTGTTCCAAGACATTTGTGCTTTAGCGA
EW718927       <-- AACAGCCTGTAACAAAAGTTTTGTGTTCCAAGACATTTGTGCTTTAGCGA
FD968181       <-- AACATCCTGTAACAAAAGTTTTGTGTTCCAAGACATTTGTGCTTTAGCGA
FD553110       <-- AACAGCCTGTAACAAAAGTTTTGTGTTCCAAGACATTTGTGCTTTAGCGA
EW734774       --> ..................................................
FD972266       --> ..................................................
EY916347       --> ..................................................
EX771820       --> AACAACCTGTAACAAAAGTTTTGTGTTCCAAGACATTTGTGCTTTAGCGA
EW714772       --> AACAGCCTGTAACAAAAGTTTTGTGTTCCAAGACATTTGTGCTTTAGCGA
FD556887       --> AACAGCCTGTAACAAAAGTTTTGTGTTCCAAGACATTTGTGCTTTAGCGA

               851    -    901
UN19637        --> CATTCGCCATGACTTCACTTATGATCGTTCTCATGTTTTT-CCTTCTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- CATTCGCCATGACTTCACTTATGATCGTTCTCATGTTTTT-CCTTCTTTT
FD544687       <-- CATTCGCCATGACTTCACTTATGATCGTTCTCATGTTTTT-CCTTCTTTT
EW738488       <-- ..................................................
EX775904       <-- CATTCGCCATGACTTCACTTATGATCGTTCTCATTTTTTTTCCTTCTTTT
EW718927       <-- CATTCGCCATGACTTCACTTATGATCGTTCTCATGTTTTT-CCTTCTTTT
FD968181       <-- CATTCGCCATGACTTCACTTATGATCGTTCTCATGTTTTT-CCTTCTTTT
FD553110       <-- CATTCGCCATGACTTCACTTATGATCGTTCTCATGTTTTT-CCT......
EW734774       --> ..................................................
FD972266       --> ..................................................
EY916347       --> ..................................................
EX771820       --> CATTCGCCATGACTTCACTTATGATCGTTCTCATTTTTTT-CCTTCTTTT
EW714772       --> CATTCGCCATGACTTCACTTATGATCGTTCTCATGTTTTT-CCTTCTTTT
FD556887       --> CATTCGCCATGACTTCACTTATGATCGTTCTCATGTTTTT-CCT......

               901    -    951
UN19637        --> TCTTATTATATCTTAAGATTATTATGATAACAGAATAAAAAAGCAAATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- TCTTATTATATCTTAAGATTATTATGATAACAGAATAAAAAAGCAAATTG
FD544687       <-- TCTTATTATATCTTAAGATTATTATGATAACAGAATAAAAAAGCAAATTG
EW738488       <-- ..................................................
EX775904       <-- TCTTATTATATCTTAAGATTATTATGATAACAGAATAAAAAAGCAAATTG
EW718927       <-- TCTTATTATATCTTAAGATTATTATGATAACAGAATAAAAAAGCAAATTG
FD968181       <-- TCTTATTATATCTTAAGATTATTATGATAACAGAATAAAAAAGCAAATTG
FD553110       <-- ..................................................
EW734774       --> ..................................................
FD972266       --> ..................................................
EY916347       --> ..................................................
EX771820       --> TCTTATTATATCTTAAGAT-ATTATGATAACAGA-TAAAAA-GCAAATTG
EW714772       --> TCTTATTATATCTTAAGATTATTATGATAACAGAATAAAAAAGCAAATTG
FD556887       --> ..................................................

               951    -   1001
UN19637        --> TGACAAGAGACGCATACTTAAAATAGAGTTACCATATGTTATGTGGTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD935369       <-- TGACAAGAGACGCATACTTAAAATAGAGTTACCATATGTTATGTGGTTGG
FD544687       <-- TGACg.............................................
EW738488       <-- ..................................................
EX775904       <-- TGAC..............................................
EW718927       <-- TGAC..............................................
FD968181       <-- TGACAAGAGACACATACTTAAAATAGAATTACCATATGTc..........
FD553110       <-- ..................................................
EW734774       --> ..................................................
FD972266       --> ..................................................
EY916347       --> ..................................................
EX771820       --> TGAC..............................................
EW714772       --> TGAC..............................................
FD556887       --> ..................................................

               1001   -   1051
UN19637        --> CTGTGCG
                   ~~~~~~~
FD935369       <-- CTGTGCG
FD544687       <-- .......
EW738488       <-- .......
EX775904       <-- .......
EW718927       <-- .......
FD968181       <-- .......
FD553110       <-- .......
EW734774       --> .......
FD972266       --> .......
EY916347       --> .......
EX771820       --> .......
EW714772       --> .......
FD556887       --> .......