RadishBase

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Alignment for radish unigene UN19726

               1      -     51
UN19726        --> TTTTTGTCTCATCTCCTTCACCTTCTCCTCCTATCTCTCTCTCTCTC---
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572170       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985042       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX776312       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV540069       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910420       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552781       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD538509       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544290       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719437       <-- ..................................................  Raphanus sativus var. oleiformis
EY934312       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX753766       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY894844       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX772331       --> TTTTTGTCTCATCTCCTTCACCTTCTCCTCCTATCTCTCTCTCTCTC--T  Raphanus raphanistrum subsp. landra
EY904799       --> TTTTTGTCTCATCTCCTTCACCTTCTCCTCCTATCTCTCTCTCTCTC---  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907611       --> TTTTTGTCTCATCTCCTTCACCTTCTCCTCCTATCTCTCTCTCTCTC---  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908501       --> TTTTTGTCTCATCTCCTTCACCTTCTCCTCCTATCTCTCTCTCTC-----  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914357       --> TTTTTGTCTCATCTCCTTCACCTTCTCCTCCTATCTCTCTCTCTCTC--T  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938110       --> TTTTTGTCTCATCTCCTTCACCTTCTCCTCCTATCTCTCTCTCTCTC--T  Raphanus sativus cv Early Scarlet Globe
FD542437       --> TTTTTGTCTCATCTCCTTCACCTTCTCCTCCTATCTCTCTCTCTCTC---  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556475       --> TTTTTGTCTCATCTCCTTCACCTTCTCCTCCTATCTCTCTCTCTCTC--T  Raphanus raphanistrum subsp. landra
EV526509       --> .....GTCTCATCTCCTTCACCTTCTCCTCCTATCTCTCTCTCTCTC--T  Raphanus raphanistrum subsp. maritimus
EV527185       --> .....GTCTCATCTCCTTCACCTTCTCCTCCTATCTCTCTCTCTC-----  Raphanus raphanistrum subsp. maritimus
EV535367       --> .....GTCTCATCTCCTTCACCTTCTCCTCCTATCTCTCTCTCTCTC---  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548655       --> .....GTCTCATCTCCTTCACCTTCTCCTCCTATCTCTCTCTCTCTC---  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567182       --> .....GTCTCATCTCCTTCACCTTCTCCTCCTATCTCTCTCTCTCTCTCT  Raphanus raphanistrum subsp. landra
EW714602       --> .....GTCTCATCTCCTTCACCTTCTCCTCCTATCTCTCTCTCTCTC---  Raphanus sativus var. oleiformis
EW725673       --> .....GTCTCATCTCCTTCACCTTCTCCTCCTATCTCTCTCTCTCTC---  Raphanus sativus cv Early Scarlet Globe
EX747731       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX750255       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               51     -    101
UN19726        --> -CCTCAAATCTTTTCAGGCATAACTAAATCGAATCATAAGCACTTCAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572170       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985042       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX776312       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV540069       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910420       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552781       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD538509       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544290       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719437       <-- ..................................................  Raphanus sativus var. oleiformis
EY934312       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX753766       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY894844       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX772331       --> CCCTCAAATCTTTTCAGGCATAACTAAATCGAATCATAAGCACTTCAAAG  Raphanus raphanistrum subsp. landra
EY904799       --> -CCTCAAATCTTTTCAGGCATAACTAAATCGAATCATAAGCACTCCAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907611       --> -CCTCAAATCTTTTCAGGCATAACTAAATCGAATCATAAGCACTCCAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908501       --> -CCTCAAATCTTTTCAGGCATAACTAAATCGAATCATAAGCACTTCAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914357       --> CCCTCAAATCTTTTCAGGCATAACTAAATCGAATCATAAGCACTTCAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938110       --> CCCTCAAATCTTTTCAGGCATAACTAAATCGAATCATAAGCACTTCAAAG  Raphanus sativus cv Early Scarlet Globe
FD542437       --> -CCTCAAATCTTTTCAGGCATAACTAAATCGAATCATAAGCACTCCAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556475       --> CCCTCAAATCTTTTCAGGCATAACTAAATCGAATCATAAGCACTTCAAAG  Raphanus raphanistrum subsp. landra
EV526509       --> CCCTCAAATCTTTTCAGGCATAACTAAATCGAATCATAAGCACTTCAAAG  Raphanus raphanistrum subsp. maritimus
EV527185       --> -CCTCAAATCTTTTCAGGCATAACTAAATCGAATCATAAGCACTTCAAAG  Raphanus raphanistrum subsp. maritimus
EV535367       --> -CCTCAAATCTTTTCAGGCATAACTAAATCGAATCATAAGCACTCCAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548655       --> -CCTCAAATCTTTTCAGGCATAACTAAATCGAATCATAAGCACTTCAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567182       --> CCCTCAAATCTTTTCAGGCATAACTAAATCGAATCATAAGCACTTCAAAG  Raphanus raphanistrum subsp. landra
EW714602       --> -CCTCAAATCTTTTCAGGCATAACTAAATCGAATCATAAGCACTTCAAAG  Raphanus sativus var. oleiformis
EW725673       --> -CCTCAAATCTTTTCAGGCATAACTAAATCGAATCATAAGCACTTCAAAG  Raphanus sativus cv Early Scarlet Globe
EX747731       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX750255       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               101    -    151
UN19726        --> TATAACTAAAACTTCCTGATCTATTAACTGACAATAGATTCTTGGGCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- ..................................................
EV572170       <-- ..................................................
FD985042       <-- ..................................................
EX776312       <-- ..................................................
EV540069       <-- ..................................................
EY910420       <-- ..................................................
FD552781       <-- ..................................................
FD538509       <-- ..................................................
EV544290       <-- ..................................................
EW719437       <-- ..................................................
EY934312       <-- ..................................................
EX753766       <-- ..................................................
EY894844       <-- ..................................................
EX772331       --> TATAACTAAAACTTCCTGATCTATTAACTGACAATAGATTCTTGGGCTCT
EY904799       --> TATAACTAAAAATTCCTGATCTATTAACTGACAATAGATTCTTGGGCTCT
EY907611       --> TATAACTAAAAATTCCTGATCTATTAACTGACAATAGATTCTTGGGCTCT
EY908501       --> TATAACTAAAACTTCCTGATCTATTAACTGACAATAGATTCTTGGGCTCT
EY914357       --> TATAACTAAAACTTCCTGATCTATTAACTGACAATAGATTCTTGGGCTCT
EY938110       --> TATAACTAAAACTTCCTGATCTATTAACTGACAATAGATTCTTGGGCTCT
FD542437       --> TATAACTAAAAATTCCTGATCTATTAACTGACAATAGATTCTTGGGCTCT
FD556475       --> TATAACTAAAACTTCCTGATCTATTAACTGACAATAGATTCTTGTGCTCT
EV526509       --> TATAACTAAAACTTCCTGATCTATTAACTGACAATAGATTCTTGGGCTCT
EV527185       --> TATAACTAAAACTTCCTGGTCTATTAACTGACAATAGATTCTTGGGCTCT
EV535367       --> TATAACTAAAAATTCCTGATCTATTAACTGACAATAGATTCTTGGGCTCT
EV548655       --> TATAACTAAAACTTCCTGATCTATTAACTGACAATAGATTCTTGGGCTCT
EV567182       --> TATAACTAAAACTTCCTGATCTATTAACTGACAATAGATTCTTGGGCTCT
EW714602       --> TATAACTAAAACTTCCTGATCTATTAACTGACAATAGATTCTTGGGCTCT
EW725673       --> TATAACTAAAACTTCCTGATCTATTAACTGACAATAGATTCTTGGGCTCT
EX747731       --> ..................................................
EX750255       --> ..................................................

               151    -    201
UN19726        --> TCTTTATTTCGACAGATTCTAATCCGTTATAGTTGTTTCAAACGACACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- ..................................................
EV572170       <-- ..................................................
FD985042       <-- ..................................................
EX776312       <-- ..................................................
EV540069       <-- ..................................................
EY910420       <-- ..................................................
FD552781       <-- ..................................................
FD538509       <-- ..................................................
EV544290       <-- ..................................................
EW719437       <-- ..................................................
EY934312       <-- ..................................................
EX753766       <-- ..................................................
EY894844       <-- ..................................................
EX772331       --> TCTTTATTTCGACAGATTCTAATCCGTTATAGTTGTTTCAAACGACACGG
EY904799       --> TCTTTATTTCGACAGATTCTAATCCGTTATAGTTGTTTCAAACGACACGG
EY907611       --> TCTTTATTTCGACAGATTCTAATCCGTTATAGTTGTTTCAAACGACACGG
EY908501       --> TCTTTGTTTCGACATATTCTAATCCGTTATAGTTGTTTCAAACGACACGG
EY914357       --> TCTTTATTTCGACAGATTCTAATCCGTTATAGTTGTTTCAAACGACACGG
EY938110       --> TCTTTATTTCGACAGATTCTAATCCGTTATAGTTGTTTCAAACGACACGG
FD542437       --> TCTTTATTTCGACAGATTCTAATCCGTTATAGTTGTTTCAAACGACACGG
FD556475       --> TCTTTATTTCGACAGATTCTAATCCGTTATAGTTGTTTCAAACGACACGG
EV526509       --> TCTTTATTTCGACAGATTCTAATCCGTTATAGTTGTTTCAAACGACACGG
EV527185       --> TCTTTATTTCGACAGATTCTAATCCGTTATAGTTGTTTCAAACGACACGG
EV535367       --> TCTTTATTTCGACAGATTCTAATCCGTTATAGTTGTTTCAAACGACACGG
EV548655       --> TCTTTATTTCGACAGATTCTAATCCGTTATAGTTGTTTCAAACGACACGG
EV567182       --> TCTTTATTTCGACAGATTCTAATCCGTTATAGTTGTTTCAAACGACACGG
EW714602       --> TCTTTATTTCGACAGATTCTAATCCGTTATAGTTGTTACAAACGACACGG
EW725673       --> TCTTTGTTTCGACATATTCTAATCCGTTATAGTTGTTTCAAACGACACGG
EX747731       --> ..................................................
EX750255       --> ..................................................

               201    -    251
UN19726        --> TGAAACCTTTGTTTTTATATAATATCAGACTCCTACTTCTTCATCTGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- .........................................CATCTGTGA
EV572170       <-- ..................................................
FD985042       <-- ..................................................
EX776312       <-- ..................................................
EV540069       <-- ..................................................
EY910420       <-- ..................................................
FD552781       <-- ..................................................
FD538509       <-- ..................................................
EV544290       <-- ..................................................
EW719437       <-- ..................................................
EY934312       <-- ..................................................
EX753766       <-- ..................................................
EY894844       <-- ..................................................
EX772331       --> TGAAACCTTTGTTTTTATATAATATCAGACTCCTACTTCTTCATCTGTGA
EY904799       --> TGAAACCTTTGTTTTTATATAATATCAGACTCCTACTTCTTCATCTGTGA
EY907611       --> CGAAACCTTTGTTTTTATATAATATCAGACTCCTACTTCTTCATCTGTGA
EY908501       --> TGAAACCTTTGTTTTTATATAATATCAGACTCCTACTTCTTCATCTGTGA
EY914357       --> TGAAACCTTTGTTTTTATATAATATCAGACTCCTACTTCATCATCTGTGA
EY938110       --> TGAAACCTTTGTTTTTATATAATATCAGACTCCTACTTCTTCATCTGTGA
FD542437       --> TGAAACCTTTGTTTTTATATAATATCAGACTCCTACTTCTTCATCTGTGA
FD556475       --> TGAAACCTTTGTTTTTATATAATATCAGACTCCTACTTCTTCATCTGTGA
EV526509       --> TGAAACCTTTGTTTTTATATAATATCAGACTCCTACTTCTTCATCTGTGA
EV527185       --> TGAAACCTTTGTTTTTATATAATATCAGACTCCTACTTCTTCATCTGTGA
EV535367       --> TGAAACCTTTGTTTTTATATAATATCAGACTCCTACTTCTTCATCTGTGA
EV548655       --> TGAAACCTTTGTTTTTATATAATATCAGACTCCTACTTCTTCATCTGTGA
EV567182       --> TGAAACCTTTGTTTTTATATAATATCAGACTCCTACTTCTTCATCTGTGA
EW714602       --> TGAAACCTTTGTTTTTATATAATATCAGACTCCTACTTCTTCATCTGTGA
EW725673       --> TGAAACCTTTGTTTTTATATAATATCAGACTCCTACTTCTTCATCTGTGA
EX747731       --> ..................................................
EX750255       --> ..................................................

               251    -    301
UN19726        --> AACTTTTAAGCTAAAAA-TGGGTGTTGAAAAAATGGTGTGTTTGGTTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- AACTTT-AAGCTAAAA--TGGGTGTTGAAAAA-TGGTGTGTTTGGTTTCT
EV572170       <-- ........AGCTAAAAA-TGGGTGTTGAAAAAATGGTGTGTTTGGTTTCT
FD985042       <-- ...................GGGTGTTGAAAAAATGGTGTGTTTGGTTTCT
EX776312       <-- ..................................GGTGTGTTTGGTTTCT
EV540069       <-- .............................................TTTCT
EY910420       <-- ..................................................
FD552781       <-- ..................................................
FD538509       <-- ..................................................
EV544290       <-- ..................................................
EW719437       <-- ..................................................
EY934312       <-- ..................................................
EX753766       <-- ..................................................
EY894844       <-- ..................................................
EX772331       --> AACTTTTAAGCTAAAAA-TGGGTGTTGAAAAAATGGTGTGTTTGGTTTCT
EY904799       --> AACTTTTAAGCTAAAAA-TGGGTGTTGAAAAAATGGTGTGTTTGGTTTCT
EY907611       --> AACTTTTAAGCTAAAAA.................................
EY908501       --> AACTTTTAAGCTAAAAAATGGGTGTTGAAAAAATGGTGTGTTTGGTTTCT
EY914357       --> AACTTTTAAGCTAAAAA-TGGGTGTTGAAAAAATGGTGTGTTTGGTTTCT
EY938110       --> AACTTTTAAGCTAAAAA-TGGGTGTTGAAAAAATGGTGTGTTTGGTTTCT
FD542437       --> AACTTTTAAGCTAAAAA-TGGGTGTTGAAAAAATGGTGTGTTTGGTTTCT
FD556475       --> AACTTTTAAGCTAAAAA-TGGGTGTTGAAAAAATGGTGTGTTTGGTTTCT
EV526509       --> AACTTTTAAGCTAAAAA-TGGGTGTTGAAAAAATGGTGTGTTTGGTTTCT
EV527185       --> AACTTTTAAGCTAAAAA-TGGGTGTTGAAAAAATGGTGTGTTTGGTTTCT
EV535367       --> AACTTTTAAGCTAAAAA-TGGGTGTTGAAAAAATGGTGTGTTTGGTTTCT
EV548655       --> AACTTTTAAGCTAAAAA-TGGGTGTTGAAAAAATGGTGTGTTTGGTTTCT
EV567182       --> AACTTTTAAGCTAAAAA-TGGGTGTTGAAAAAATGGTGTGTTTGGTTTCT
EW714602       --> AACTTTTAAGCTAAAAA-TGGGTGTTGAAAAAATGGTGTGTTTGGTTTCT
EW725673       --> AACTTTTAAGCTAAAAAATGGGTGTTGAAAAAATGGTGTGTTTGGTTTCT
EX747731       --> .......................................GTTTGGTTTCT
EX750255       --> ..................................................

               301    -    351
UN19726        --> CGCACTGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCGCCAAGTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- CGCACTGGTCGTCAGTTTCAGAGATACAACAAAGGTCTTCGCCAAGTCGT
EV572170       <-- CGCACTGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCGCCAAGTCGT
FD985042       <-- CGCACTGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCGCCAAGTCGT
EX776312       <-- CGCACTGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCGCCAAGTCGT
EV540069       <-- CGCACTGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCGCCAAGTCGT
EY910420       <-- ..................................................
FD552781       <-- ..................................................
FD538509       <-- ..................................................
EV544290       <-- ..................................................
EW719437       <-- ..................................................
EY934312       <-- ..................................................
EX753766       <-- ..................................................
EY894844       <-- ..................................................
EX772331       --> CGCACTGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCGCCAAGTCGT
EY904799       --> CGCACTGGTCGTCAGTTTCAGAGATACAACAAAGGTCTTCGCCAAGTCGT
EY907611       --> ..................................................
EY908501       --> CGCACTGGTCGTCAGTTTCAGAGATACAATAAAGGTCGTCGCCAAGTCGT
EY914357       --> CGCACTGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCGCCAAGTCGT
EY938110       --> CGCACTGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCGCCAAGTCGT
FD542437       --> CGCACTGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCGCCAAGTCGT
FD556475       --> CGCACTGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCGCCAAGTCGT
EV526509       --> CGCACTGGTCGTCAGTTTCAGAGATACAACAAAGGTCTTCGCCAAGTCGT
EV527185       --> CGCACTGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCGCCAAGTCGT
EV535367       --> CGCACTGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCGCCAAGTCGT
EV548655       --> CGCACTGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCGCCAAGTCGT
EV567182       --> CGCACTGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCGCCAAGTCGT
EW714602       --> CGCACTGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCGCCAAGTCGT
EW725673       --> CGCACTGGTCGTCAGTTTCAGAGATACAATAAAGGTCGTCGCCAAGTCGT
EX747731       --> CGCACTGGTCGTCAGTTTCAGAGATACAATAAAGGTCGTCGCCAAGTCGT
EX750255       --> ..................................................

               351    -    401
UN19726        --> CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
EV572170       <-- CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
FD985042       <-- CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
EX776312       <-- CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
EV540069       <-- CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
EY910420       <-- .......taTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
FD552781       <-- ................................GCGATGGTAAAATTAGTG
FD538509       <-- ..................................................
EV544290       <-- ..................................................
EW719437       <-- ..................................................
EY934312       <-- ..................................................
EX753766       <-- ..................................................
EY894844       <-- ..................................................
EX772331       --> CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
EY904799       --> CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
EY907611       --> ..................................................
EY908501       --> CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
EY914357       --> CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
EY938110       --> CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
FD542437       --> CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
FD556475       --> CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
EV526509       --> CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
EV527185       --> CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
EV535367       --> CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
EV548655       --> CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
EV567182       --> CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
EW714602       --> CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
EW725673       --> CGGATGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
EX747731       --> CGGGTGTATTCCGTACAGATTCAAGTTATCAAGCGATGGTAAAATTAGTG
EX750255       --> ..................................................

               401    -    451
UN19726        --> ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
EV572170       <-- ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
FD985042       <-- ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
EX776312       <-- ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
EV540069       <-- ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
EY910420       <-- ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
FD552781       <-- ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAA-GGTCACGCCATGATG
FD538509       <-- ........................CTTCTCAAAAAGGTCACGCCATGATG
EV544290       <-- ..................................................
EW719437       <-- ..................................................
EY934312       <-- ..................................................
EX753766       <-- ..................................................
EY894844       <-- ..................................................
EX772331       --> ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
EY904799       --> ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
EY907611       --> ..................................................
EY908501       --> ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
EY914357       --> ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
EY938110       --> ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
FD542437       --> ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
FD556475       --> ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAA-GGTCACGCCATGATG
EV526509       --> ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
EV527185       --> ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
EV535367       --> ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
EV548655       --> ACGAGGTAGAAGTTCTTGTTATCTCTTCTTAAAAAGGTCACGCCATGATG
EV567182       --> ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
EW714602       --> ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
EW725673       --> ACGAGGTAGAAGTTCTTGTTATCTCTTCTCAAAAAGGTCACGCCATGATG
EX747731       --> ACGAGGTAGAAGTTCTTGTTACCTCTTCTCAAAAAGGTCACGCCATGATG
EX750255       --> ..................................................

               451    -    501
UN19726        --> TTTCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- TTCCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572170       <-- TTTCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. landra
FD985042       <-- TTTCCTAAGGGTGATTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCCTC  Raphanus raphanistrum subsp. landra
EX776312       <-- TTTCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. landra
EV540069       <-- TTCCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910420       <-- TTTCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552781       <-- TTTCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. landra
FD538509       <-- TTCCCTAAGGGTGGTTGGGAGCTCGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544290       <-- ......AAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719437       <-- .....................CTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus sativus var. oleiformis
EY934312       <-- ..........................TGAATCTGTAGAAGAAGCTGCATC  Raphanus sativus cv Early Scarlet Globe
EX753766       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY894844       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX772331       --> TTTCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. landra
EY904799       --> TTCCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907611       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908501       --> TTCCCTAAGGGTGGTTGGGAGCTTGATGAATCTG................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914357       --> TTTCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938110       --> TTTCCTAATGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus sativus cv Early Scarlet Globe
FD542437       --> TTCCCTAAGGGTGGTTGGGAGCTCGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556475       --> TTTCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. landra
EV526509       --> TTTCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. maritimus
EV527185       --> TTTCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. maritimus
EV535367       --> TTCCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548655       --> TTCCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567182       --> TTTCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. landra
EW714602       --> TTCCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus sativus var. oleiformis
EW725673       --> TTCCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus sativus cv Early Scarlet Globe
EX747731       --> TTCCCTAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATC  Raphanus raphanistrum subsp. maritimus
EX750255       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN19726        --> AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EV572170       <-- AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
FD985042       <-- AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EX776312       <-- AAGAGAGTTTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EV540069       <-- AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EY910420       <-- AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
FD552781       <-- AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
FD538509       <-- AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EV544290       <-- AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EW719437       <-- AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EY934312       <-- AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EX753766       <-- ............TGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EY894844       <-- ..................................................
EX772331       --> AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EY904799       --> AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EY907611       --> ..................................................
EY908501       --> ..................................................
EY914357       --> AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EY938110       --> AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
FD542437       --> AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
FD556475       --> AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EV526509       --> AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EV527185       --> AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EV535367       --> AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EV548655       --> AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EV567182       --> AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EW714602       --> AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EW725673       --> AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EX747731       --> AAGAGAGTCTCTTGAAGAAGCTGGAGTTCTTGGCAACGTAGAGCATCAGT
EX750255       --> ..................................................

               551    -    601
UN19726        --> TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- TGGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572170       <-- TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. landra
FD985042       <-- TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. landra
EX776312       <-- TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. landra
EV540069       <-- TGGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910420       <-- TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552781       <-- TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. landra
FD538509       <-- TGGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544290       <-- TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719437       <-- TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus sativus var. oleiformis
EY934312       <-- TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus sativus cv Early Scarlet Globe
EX753766       <-- TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. maritimus
EY894844       <-- ..............TTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. maritimus
EX772331       --> TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. landra
EY904799       --> TGGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907611       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908501       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914357       --> TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938110       --> TAGGAAAATGGGACTTTTTG..............................  Raphanus sativus cv Early Scarlet Globe
FD542437       --> TGGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556475       --> TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. landra
EV526509       --> TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. maritimus
EV527185       --> TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. maritimus
EV535367       --> TGGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548655       --> TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567182       --> TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. landra
EW714602       --> TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus sativus var. oleiformis
EW725673       --> TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus sativus cv Early Scarlet Globe
EX747731       --> TAGGAAAATGGGACTTTTTGAGCAAAAGCAGAGGAACATACTATGAAGGA  Raphanus raphanistrum subsp. maritimus
EX750255       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN19726        --> CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- CTGATGTTCCCTTTGCTTGTAGCAGAACAACTTGAGCTTTGGCCTGAGCA
EV572170       <-- CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
FD985042       <-- CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EX776312       <-- CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EV540069       <-- CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EY910420       <-- CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
FD552781       <-- CTGATGTTTCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
FD538509       <-- CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EV544290       <-- CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EW719437       <-- CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EY934312       <-- CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EX753766       <-- CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EY894844       <-- CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EX772331       --> CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EY904799       --> CTGATGTTCTCTTTGCTTGTAGCAGAACAACTTGAGCTTTGGCCTGAGCA
EY907611       --> ..................................................
EY908501       --> ..................................................
EY914357       --> CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EY938110       --> ..................................................
FD542437       --> CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
FD556475       --> CTGATGTTTCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EV526509       --> CTGATGTTCCCTTTGCTTGTAACATAACAACTTGAGCTTTGGCCTGAGCA
EV527185       --> CTGATGTTCCCTTCGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EV535367       --> CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EV548655       --> CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EV567182       --> CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EW714602       --> CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EW725673       --> CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EX747731       --> CTGATGTTCCCTTTGCTTGTAACAGAACAACTTGAGCTTTGGCCTGAGCA
EX750255       --> ..................................................

               651    -    701
UN19726        --> ACATGCTAGGCAAAGAATCTGGATGAACGTAGTTGACGCCAGAGAAGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- ACA-CCTAGGCAAAGAATCTGGATGAACGTAGTTGACGCTAGAGAAGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572170       <-- ACATGCTAGGCAAAGAATCTGGATGAACGTAGTTGACGCCAGAGAAGCCT  Raphanus raphanistrum subsp. landra
FD985042       <-- ACATGCTAGGCAAAGAATCTGGATGAACGTAGTTGACGCCAGAGAAGCCT  Raphanus raphanistrum subsp. landra
EX776312       <-- ACATGCTAGGCAAAGAATCTGGATGAACGTAGTTTACGCCAGAGAAGCCT  Raphanus raphanistrum subsp. landra
EV540069       <-- ACATGCTAGGCAAAGAATCTGGATGAACGTAGTTGACGCTAGAGAAGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910420       <-- ACATGCTAGGCAAAGAATCTGGATGAACGTAGTTGACGCCAGAGAAGCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552781       <-- ACATGCTAGGCAAAGAATCTGGATGAACGTAGTTGACGCCAGAGAAGCCT  Raphanus raphanistrum subsp. landra
FD538509       <-- ACATGCTAGGCAAAGAATCTGGATGAACGTAGTTGACGCTAGAGAAGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544290       <-- ACACGCTAGGCAAAGAATCTGGATGAACGTAGTTGACGCCAGAGAAGCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719437       <-- ACATGCTAGGCAAAGAGTCTGGATGAACGTAGTTGACGCCAGAGAAGCCT  Raphanus sativus var. oleiformis
EY934312       <-- ACATGCTAGGCAAAGAATCTGGATGAACGTAGTTGACGCCAGAGAAGCCT  Raphanus sativus cv Early Scarlet Globe
EX753766       <-- ACATGCTAGGCAAAGAGTTTGGATGAACGTAGTTGACGCCAGAGAAGCCT  Raphanus raphanistrum subsp. maritimus
EY894844       <-- ACATGCTAGGCAAAGAGTCTGGATGAACGTAGTTGACGCCAGAGAAGCCT  Raphanus raphanistrum subsp. maritimus
EX772331       --> ACATGCTAG-CAAAGAATCTGGATGA-CGTAGTTTACGC-AGAGAg....  Raphanus raphanistrum subsp. landra
EY904799       --> ACA-CCTA-GCAAAGAATCTGGATGAACGTAGTTGACGCTAGAGAAGC-T  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907611       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908501       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914357       --> ACATG.............................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938110       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD542437       --> ACATGCTAG-CAAAG...................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556475       --> ACATGCTAG-C-AAGAATCTGGATGAACGTAGTTGACGC-AGAGA-GCCT  Raphanus raphanistrum subsp. landra
EV526509       --> ACATGCTAGGCAAAGAATCTGGATGAACGTAGTTGACGCCAGAGAAGCCT  Raphanus raphanistrum subsp. maritimus
EV527185       --> ACATGCT...........................................  Raphanus raphanistrum subsp. maritimus
EV535367       --> ACATG.............................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548655       --> ACACGCTAGGCAAAGAATCTGGATGAACGTAGTTGACGCCAGAGAAGCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567182       --> ACATGCTATGCAAAGAATCTGGATGAACGTAGTTGACGCCAGAGAAGCCT  Raphanus raphanistrum subsp. landra
EW714602       --> ACATGCTAGGCAAAGAGTCTGGATGAACGTAGTTGA..............  Raphanus sativus var. oleiformis
EW725673       --> -CATGCTAG-CAAAGAGTCTGGATGAACGTAGTTGACGCCAGAGAAGCCT  Raphanus sativus cv Early Scarlet Globe
EX747731       --> ACATGCTAGGCAAAGAGTCTGGATGAACGTAGTTGACGCCAGAGAAGCCT  Raphanus raphanistrum subsp. maritimus
EX750255       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN19726        --> GTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGCGAGACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- GTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGCGAGACTC
EV572170       <-- GTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGCGAGACTC
FD985042       <-- GTAGAGATTGGTGGATGAAAGAATCATTAGATGTTTTGGTTGCGAGACTC
EX776312       <-- GTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGCGAGACTC
EV540069       <-- GTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGCGAGACTC
EY910420       <-- GTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGCGAGACTC
FD552781       <-- GTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGCGAGACTC
FD538509       <-- GTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGCGAGACTC
EV544290       <-- GTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGCGAGACTC
EW719437       <-- GTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGCGAGACTC
EY934312       <-- GTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGCGAGACTC
EX753766       <-- GTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGCGAGACTT
EY894844       <-- GTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGCGAGACTC
EX772331       --> ..................................................
EY904799       --> GTAGAGAT-GGTGGATGAA-GAAGCATTAGAT..................
EY907611       --> ..................................................
EY908501       --> ..................................................
EY914357       --> ..................................................
EY938110       --> ..................................................
FD542437       --> ..................................................
FD556475       --> GTAGAGAT-GGTGGATGA................................
EV526509       --> GTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGCGAGACCC
EV527185       --> ..................................................
EV535367       --> ..................................................
EV548655       --> GTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGCGAGACTC
EV567182       --> GTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGCGAGACTC
EW714602       --> ..................................................
EW725673       --> GTAGAGAT-GGTGGATGAAAGA-GCA-TAGATGTTTTGGTTGCGAG....
EX747731       --> GTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGCGAGACTC
EX750255       --> ..................................................

               751    -    801
UN19726        --> TCGTCACCAATGATTCAACCAAAGGAAGAGAAGACTCTTTCCATCTCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- TCGTCACCAATGATTCAACCAAAGGAAGAGAAGACTCTTTCCATCTCTAT
EV572170       <-- TCGTCACCAATGATTCAACCAAAGGAAGAGAAGACTCTTTCTATCTCTAT
FD985042       <-- TCGTCACCAATGATTCAACCAAAGGAAGAGAAGACTCTTTCCATCTCTAT
EX776312       <-- TCGTCACCAATGATTCAACCAAAGGAAGAGAAGACTCTTTCCATCTCTAT
EV540069       <-- TCGTCACCAATGATTCAACCAAAGGAAGAGAAGACTCTTTCCATCTCTAT
EY910420       <-- TCGTCACCAATGATTCAACCAAAGGAAGAGAAGACTCTTTCCATCTCTAT
FD552781       <-- TCGTCACCAATGATTCAACCAAAGGAAGAGAAGACTCTTTCCATCTCTAT
FD538509       <-- TCGTCACCAATGATTCAACCAAAGGAAGAGAAGACTCTTTCCATCTCTAT
EV544290       <-- TCGTCACCAATTATTCAACCAAAGGAAGAGAAGACTCTTTCCATCTCTAT
EW719437       <-- TCGTCACCAATGATTCAACCAAAGGAAGAGAAGACTCTTTCCATCTCTAT
EY934312       <-- TCGTCACCAATGATTCAACCAAAGGAAGAGAAGACTCTTTCCATCTCTAT
EX753766       <-- TCGTCACCAATGATTCAACCAAAGGAAGAGAAGACTCTTTCCATTTTTAT
EY894844       <-- TCGTCACCAATGATTCAACCAAAGGAAGAGAAGACTCTTTCCATCTCTAT
EX772331       --> ..................................................
EY904799       --> ..................................................
EY907611       --> ..................................................
EY908501       --> ..................................................
EY914357       --> ..................................................
EY938110       --> ..................................................
FD542437       --> ..................................................
FD556475       --> ..................................................
EV526509       --> TCGTCACCAATGATTCAACC..............................
EV527185       --> ..................................................
EV535367       --> ..................................................
EV548655       --> TCGTCACCAATTATTCAACCAAAGGAAGAGAAGACTCTTTCCATCTCTAT
EV567182       --> TCGTCACCAATGATTCAACCAAAGGAAGAGAAGACTCTTTCTATCTCTAT
EW714602       --> ..................................................
EW725673       --> ..................................................
EX747731       --> TCGTCACCAATGATTCAACCAAAGGAAGAGAAGACTCTTTCCATCTCTAT
EX750255       --> ....................................CTTTCCATCTCTAT

               801    -    851
UN19726        --> TGAAACAATGTGCTGATGACTGCTGATTGTGATGGGAGTTTTTGGACTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- TGAAACAATGTGCTGATGACTGCTGATTGTGATGGGAGTTTTTGGACTAG
EV572170       <-- TGAAACAATGTGCTGATGACTGCTGATTGTGATGGGAGTTTTTGGACTAG
FD985042       <-- TGAAACAATGTGCTGATGACTTCTGATTGTGATGGGAGTTTTTGGACTAG
EX776312       <-- TGAAACAATGTGCTGATGACTGCTGATTGTGATGGGATTTTTTGGACTAG
EV540069       <-- TGAAACAATGTGCTGATGACTGCTGATTGTGATGGGAGTTTTTGGACTAG
EY910420       <-- TGAAACAATGTGCTGATGACTGCTGATTGTGATGGGAGTTTTTGGACTAG
FD552781       <-- TGAAACAATGTGCTGATGACTGCTGATTGTGATGGGAGTTTTTGGACTAG
FD538509       <-- TGAAACAATGTGCTGATGACTGCTGATTGTGATGGGAGTTTTTGGACTAG
EV544290       <-- TGAAACAATGTGCTGATGACTGCTGATTGTGATGGGAGTTTTTGGACTAG
EW719437       <-- TGAAACAATGTGCTGATGACTGCTGATTGTGATGGGAGTTTTTGGACTAG
EY934312       <-- TGAAACAATGTGCTGATGACTGCTGATTGTGATGGGAGTTTTTGGACTAG
EX753766       <-- TGAAACAATGTGCTGATGACTGCTGATTGTGATGGGAGTTTTTGGACTAG
EY894844       <-- TGAAACAATGTGCTGATGACTGCTGATTGTGATGGGAGTTTTTGGACTAG
EX772331       --> ..................................................
EY904799       --> ..................................................
EY907611       --> ..................................................
EY908501       --> ..................................................
EY914357       --> ..................................................
EY938110       --> ..................................................
FD542437       --> ..................................................
FD556475       --> ..................................................
EV526509       --> ..................................................
EV527185       --> ..................................................
EV535367       --> ..................................................
EV548655       --> TGAAACAATGTGCTGATGACTGCTGATTGTGATGGGAGTTTT-GGACTAG
EV567182       --> TGAAACAATGTGCTGATGACTGCTGATTGgtga.................
EW714602       --> ..................................................
EW725673       --> ..................................................
EX747731       --> TGAAACAATGTGCTGATGACTGCTGATTGTGATGGGAGTTTTTGGACTAG
EX750255       --> TGAAACAATGTGCTGATGACTGCTGATTGTGATGGGAGTTTTTGGACTAG

               851    -    901
UN19726        --> TGGGTCTCTGTACATACAAATAGATGGGTTTCAGTTAGTATTGAGACTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- TGGGTCTCTGTACATACAAATAGATGGGCTTCAGTTAGTATTGAGACTGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572170       <-- TGGGTCTCTGTACATACAAATAGATGGGTTTCAGTTAGTATTGAGACTGC  Raphanus raphanistrum subsp. landra
FD985042       <-- TGGGTCTCTGTACATACAAATAGATGGGTTTCAGTTAGTATTGAGACTGC  Raphanus raphanistrum subsp. landra
EX776312       <-- TGGGTCTCTGTACATACAAATAGATGGGTTTCAGTTAGTATTGAGACTGC  Raphanus raphanistrum subsp. landra
EV540069       <-- TGGGTCTCTGTACATACAAATAGATGGGTTTCAGTTAGTATTGAGACTGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910420       <-- TGGGTCTCTGTACATACAAATAGATGGGTTTCAGTTAGTATTGAGACTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552781       <-- TGGGTCTCTGTACATACAAATAGATGGGTTTCAGTTAGTATTGAGACTGC  Raphanus raphanistrum subsp. landra
FD538509       <-- TGGGTCTCTGTACATACAAATAGATGGGTTTCAGTTAGTATTGAGACTGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544290       <-- TGGGTCTCTGTACATACAAATAGATGGGTTTCAGTTAGTATTGAGACTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719437       <-- TGGGTCTCTGTACATACAAATAGATGGGTTTCAGTTAGTATTGAGACTGC  Raphanus sativus var. oleiformis
EY934312       <-- TGGGTCTCTGTACATACAAATAGATGGGTTTCAGTTAGTATTGAGACTGC  Raphanus sativus cv Early Scarlet Globe
EX753766       <-- TGGGTCTCTGTACATACAAATAGATGGGTTTCAATTAGTATTGAGACTGC  Raphanus raphanistrum subsp. maritimus
EY894844       <-- TGGGTCTCTGTACATACAAATAGATGGGTTTCAATTAGTATTGAGACTGC  Raphanus raphanistrum subsp. maritimus
EX772331       --> ..................................................  Raphanus raphanistrum subsp. landra
EY904799       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907611       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908501       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914357       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938110       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD542437       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556475       --> ..................................................  Raphanus raphanistrum subsp. landra
EV526509       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV527185       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV535367       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548655       --> TGGGTCTCTGTA......................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567182       --> ..................................................  Raphanus raphanistrum subsp. landra
EW714602       --> ..................................................  Raphanus sativus var. oleiformis
EW725673       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX747731       --> TGGGTCTCTGTACATACAAATAGATGGGTTTCAATTAGTATTGAGACTGC  Raphanus raphanistrum subsp. maritimus
EX750255       --> TGGGTCTCTGTACATACAAATAGATGGGTTTCAATTAGTATTGAGACTGC  Raphanus raphanistrum subsp. maritimus

               901    -    951
UN19726        --> TGAAGATCAAAACAAATGCAGAGCCGGAAAACAAAAATTATGAGTAGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- TGAAGATCAAAACAAATGCAGAGCCCGAAAACAAAAATTATGAGTAGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572170       <-- TGAAGATCAAAACAAATGCAGAGCCGGAAAACAAAAGTTATGAGTAGATT  Raphanus raphanistrum subsp. landra
FD985042       <-- TGAAGATCAAAACAAATGCGGAGCCGGAAAACAAAAGTTATGAGTAGATT  Raphanus raphanistrum subsp. landra
EX776312       <-- TGAAGATCAAAACAAATGCAGAGCCGGAAAACAAAAGTTATGAGTAGATT  Raphanus raphanistrum subsp. landra
EV540069       <-- TGAAGATCAAAACAAATGCAGAGCCCGAAAACAAAAATTATGAGTAGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910420       <-- TGAAGATCAAAACAAATGCAGAGCCGGAAAACAAAAGTTATGAGTAGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552781       <-- TGAAGATCAAAACAAATGCAGAGCCGGAAAACAAAAGTTATGAGTAGATT  Raphanus raphanistrum subsp. landra
FD538509       <-- TGAAGATCAAAACAAATGCAGAGCCCGAAAACAAAAATTATGAGTAGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544290       <-- TGAAGATCAAAACAAATGCAGAGCCCGAAAACAAAAATTATGAGTAGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719437       <-- TGAAGATCAAAACAAATGCAGAGCCGGAAAACAAAAATTATGAGTAGATT  Raphanus sativus var. oleiformis
EY934312       <-- TGAAGATCAAAACAAATGCAGAGCCGGAAAACAAAAGTTATGAGTAGATT  Raphanus sativus cv Early Scarlet Globe
EX753766       <-- TTAAGATCAAAACAAATGCAGAGCCGGAAAACATAAATTATGAGTAGATT  Raphanus raphanistrum subsp. maritimus
EY894844       <-- TTAAGATCAAAACAAATGCAGAGCCGGAAAACATAAATTATGAGTAGATT  Raphanus raphanistrum subsp. maritimus
EX772331       --> ..................................................  Raphanus raphanistrum subsp. landra
EY904799       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907611       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908501       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914357       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938110       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD542437       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556475       --> ..................................................  Raphanus raphanistrum subsp. landra
EV526509       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV527185       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV535367       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548655       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567182       --> ..................................................  Raphanus raphanistrum subsp. landra
EW714602       --> ..................................................  Raphanus sativus var. oleiformis
EW725673       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX747731       --> TTAAGATCAAAACAAATGCA..............................  Raphanus raphanistrum subsp. maritimus
EX750255       --> TTAAGATCAAAACAAATGCAGAGCCGGAAAACATAAATTATGAGTAGATT  Raphanus raphanistrum subsp. maritimus

               951    -   1001
UN19726        --> TTTAGGTTTAATTTGGAGCAAAAAA-TTATCATGTGATTTAACAAGTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- TTTAGGTTTAATTTGGAGCAAAAAA-TTATCATGTGATTTAACAAGTCTT
EV572170       <-- TTTAGGTTTAATTTGGAGCAAAAAA-TTATCATGTGATTTAACAAGTCTT
FD985042       <-- TTTAGGTTTAATTTGGAGC...............................
EX776312       <-- TTTAGGTTTAATTTGGAGCAAAAAA-TTATCATGTGATTTAACAAGTCTT
EV540069       <-- TTTAGGTTTAGTTTGGAGCAAAAAA-TTATCATGTGATTTAACAAGTCTT
EY910420       <-- TTTAGGTTTAATTTGGAGCAAAAAA-TTATCATGTGATTTAACAAGTCTT
FD552781       <-- TTTAGGTTTAATTTGGAGCAAAAAA-TTATCATGTGATTTAACAAGTCTT
FD538509       <-- TTTAGGTTTAATTTGGAGCAAAAAA-TTATCATGTGATTTAACAAGTCTT
EV544290       <-- TTTAGGTTTAATTTGGAGCAAAAAAATTATCATGTGATTTAACAAGTCTT
EW719437       <-- TTTAGGTTTAATTTGGAGCAAAAAA-TTATCATGTGATTTAACAAGTCTT
EY934312       <-- TTTAGGTTTAATTTGGAGCAAAAAA-TTATCATGTGATTTAACAAGTCTT
EX753766       <-- TTTAGGTTTAATTTGGAGCAAAAAA-TTATCATGTGATTTAACAAGTCTT
EY894844       <-- TTTAGGTTTAATTTGGAGCAAAAAA-TTATCATGTGATTTAACAAGTCTT
EX772331       --> ..................................................
EY904799       --> ..................................................
EY907611       --> ..................................................
EY908501       --> ..................................................
EY914357       --> ..................................................
EY938110       --> ..................................................
FD542437       --> ..................................................
FD556475       --> ..................................................
EV526509       --> ..................................................
EV527185       --> ..................................................
EV535367       --> ..................................................
EV548655       --> ..................................................
EV567182       --> ..................................................
EW714602       --> ..................................................
EW725673       --> ..................................................
EX747731       --> ..................................................
EX750255       --> T.................................................

               1001   -   1051
UN19726        --> GTATGTCGTGTTTATAATGTTTCTGCAAGATTTGATTAAAGGGACGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- GTATGTCGTGTTTATAATGTTTCTGCAAGATTTGATTAAAGGGACGATGA
EV572170       <-- GTATGTCGTGTTTATAATGTTTCTGCAAGATTTGATTAAAGGGACGATGA
FD985042       <-- ..................................................
EX776312       <-- GTATGTCGTGTTTATAATGTTTCTGC........................
EV540069       <-- GTATGTCGTGTTTATAATGTTTCTGCAAGATTTGATT.............
EY910420       <-- GTATGTCGTGTTTATAATGTTTCTGCAAGATTTGATTAAAGGGACGATGA
FD552781       <-- GTATGTCGTGTTTATAATGTTTCTGCAAGATTTGATTAAAGGGACGATGA
FD538509       <-- GTATGTCGTGTTTATAATGTTTCTGCAAGATTTGATTAAAGGGACGATGA
EV544290       <-- GTATGTCGTGTTTATAATGTTTCTGCAAG.....................
EW719437       <-- GTATGTCGTGTTTATAATGTTTCTGCAAGATTTGATTAAAGGGACGATGA
EY934312       <-- GTATGTCGTGTTTATAATGTTTCTGCAAGATTTGATTAAAGGGACGATGA
EX753766       <-- GTATGTCGTGTTTATAATGTTTTTGCAAGATTTGATTAAAGGGACGATGA
EY894844       <-- GTATGTCGTGTTTATAATGTTTTTGCAAGATTTGATTAAAGGGACGATGA
EX772331       --> ..................................................
EY904799       --> ..................................................
EY907611       --> ..................................................
EY908501       --> ..................................................
EY914357       --> ..................................................
EY938110       --> ..................................................
FD542437       --> ..................................................
FD556475       --> ..................................................
EV526509       --> ..................................................
EV527185       --> ..................................................
EV535367       --> ..................................................
EV548655       --> ..................................................
EV567182       --> ..................................................
EW714602       --> ..................................................
EW725673       --> ..................................................
EX747731       --> ..................................................
EX750255       --> ..................................................

               1051   -   1101
UN19726        --> AGTGTTACGAACCTAAACAAAGAAAGCAAGCAAAAACTGTACAACTGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- AGTGTTACGAACat....................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572170       <-- AGTGTTACGGACCc....................................  Raphanus raphanistrum subsp. landra
FD985042       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX776312       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV540069       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910420       <-- AGTGTTACGGACCTAAACAAAGAAAGCAAGCAAAAACTGTACAACTGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552781       <-- AGTGTTACGgac......................................  Raphanus raphanistrum subsp. landra
FD538509       <-- AGTGTTACGAACCc....................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544290       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719437       <-- AGTGTTACGAACCTAAACAAAGAAAGCAAGCAAAAACTGTACAACTGTGT  Raphanus sativus var. oleiformis
EY934312       <-- AGTGTTACGGACCTAAACAAAGAAAGCAAGCAAAAACTGTACAACTGTGT  Raphanus sativus cv Early Scarlet Globe
EX753766       <-- AGTGTTACGAACCTAAACAAAGAAAGCAAGCAAAAACTGTACAACTGTGT  Raphanus raphanistrum subsp. maritimus
EY894844       <-- AGTGTTACGAACCTAAACAAAGAAAGCAAGCAAAAACTGTACAACTGTGT  Raphanus raphanistrum subsp. maritimus
EX772331       --> ..................................................  Raphanus raphanistrum subsp. landra
EY904799       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907611       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908501       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914357       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938110       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD542437       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556475       --> ..................................................  Raphanus raphanistrum subsp. landra
EV526509       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV527185       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV535367       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548655       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567182       --> ..................................................  Raphanus raphanistrum subsp. landra
EW714602       --> ..................................................  Raphanus sativus var. oleiformis
EW725673       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX747731       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX750255       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               1101   -   1151
UN19726        --> TTCCCTCAGTTTATGTTTTTCATCTCTCTTTGAATTTGCAATGGGAACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- ..................................................
EV572170       <-- ..................................................
FD985042       <-- ..................................................
EX776312       <-- ..................................................
EV540069       <-- ..................................................
EY910420       <-- TTCCCTCAGTTTATGTTTTTCATCTCTCTTTGAATTTGCAATGGGAACAC
FD552781       <-- ..................................................
FD538509       <-- ..................................................
EV544290       <-- ..................................................
EW719437       <-- TT................................................
EY934312       <-- TTCCCTCAGTTTATGTTTTTCATCTCTCTTTGAATTTGCAATGGGAACAC
EX753766       <-- TTCCCTCAGTTTATGTTTTTCATCTtt.......................
EY894844       <-- TTCCCTCAGTTTATGTTTTTCATCTCTCTTTGAATTTGCAATGGGAACAC
EX772331       --> ..................................................
EY904799       --> ..................................................
EY907611       --> ..................................................
EY908501       --> ..................................................
EY914357       --> ..................................................
EY938110       --> ..................................................
FD542437       --> ..................................................
FD556475       --> ..................................................
EV526509       --> ..................................................
EV527185       --> ..................................................
EV535367       --> ..................................................
EV548655       --> ..................................................
EV567182       --> ..................................................
EW714602       --> ..................................................
EW725673       --> ..................................................
EX747731       --> ..................................................
EX750255       --> ..................................................

               1151   -   1201
UN19726        --> TTGATTCATGATGATTTTTGTGTTTGAGAAATATTTAATAATGCAAGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901383       <-- ..................................................
EV572170       <-- ..................................................
FD985042       <-- ..................................................
EX776312       <-- ..................................................
EV540069       <-- ..................................................
EY910420       <-- TTGATTCATGAT......................................
FD552781       <-- ..................................................
FD538509       <-- ..................................................
EV544290       <-- ..................................................
EW719437       <-- ..................................................
EY934312       <-- TTGATTCATGATG.....................................
EX753766       <-- ..................................................
EY894844       <-- TTGATTCATGATGATTTTTGTGTTTGAGAAATATTTAATAATGCAAGTGG
EX772331       --> ..................................................
EY904799       --> ..................................................
EY907611       --> ..................................................
EY908501       --> ..................................................
EY914357       --> ..................................................
EY938110       --> ..................................................
FD542437       --> ..................................................
FD556475       --> ..................................................
EV526509       --> ..................................................
EV527185       --> ..................................................
EV535367       --> ..................................................
EV548655       --> ..................................................
EV567182       --> ..................................................
EW714602       --> ..................................................
EW725673       --> ..................................................
EX747731       --> ..................................................
EX750255       --> ..................................................

               1201   -   1251
UN19726        --> TGATACGTGTCG
                   ~~~~~~~~~~~~
EY901383       <-- ............
EV572170       <-- ............
FD985042       <-- ............
EX776312       <-- ............
EV540069       <-- ............
EY910420       <-- ............
FD552781       <-- ............
FD538509       <-- ............
EV544290       <-- ............
EW719437       <-- ............
EY934312       <-- ............
EX753766       <-- ............
EY894844       <-- TGATACGTGTCG
EX772331       --> ............
EY904799       --> ............
EY907611       --> ............
EY908501       --> ............
EY914357       --> ............
EY938110       --> ............
FD542437       --> ............
FD556475       --> ............
EV526509       --> ............
EV527185       --> ............
EV535367       --> ............
EV548655       --> ............
EV567182       --> ............
EW714602       --> ............
EW725673       --> ............
EX747731       --> ............
EX750255       --> ............