1      -     51
UN19766        --> GGAGCTTTCGTTTCCGCAACTCTCTTTACTTCTTCTCTTCTACCTCGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543621       <-- GGAGCTTTCGTTTCCGCAACTCTCTTTACTTCTTATCTTCTACCTCGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD572769       <-- ......gggtTTTCCGCAACTTTCTTTACTTCTTCTCTTCTACCTCGACT  Raphanus sativus cv Early Scarlet Globe
FY430067       <-- ...................cttTCTTTACTTCTTCTCTTCTACCTCGACT  Raphanus sativus cv GSK3-1
FY438417       <-- ...................................TCTTCTACCTCGACT  Raphanus sativus cv GSK3-1
FD944556       <-- ...............................................ACT  Raphanus sativus cv Early Scarlet Globe
EY904003       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912790       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730651       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV530087       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY894673       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX753911       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY902242       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537372       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX769842       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV525296       --> GGAGCTTTCGTTTCCGCAACTCTCTTTACTTCTTCTCTTCTACCTCGACT  Raphanus raphanistrum subsp. maritimus
EV547816       --> GGAGCTTTCGTTTCCGCAACTCTCTTTACTTCTTATCTTCTACCTCGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750470       --> GGAGCTTTCGTTTCCGCAACTCTCTTTACTTCTTCTCTTCTACCTCGACT  Raphanus raphanistrum subsp. maritimus
EY898693       --> GGAGCTTTCGTTTCCGCAACTCTCTTTACTTCTTCTCTTCTACCTCGACT  Raphanus raphanistrum subsp. maritimus
EY917242       --> GGAGCTTTCGTTTCCGCAACTCTCTTTACTTCTTATCTTCTACCTCGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948824       --> GGAGCTTTCGTTTCCGCAACTTTCTTCACTTCTTCTCTTCTACCTCGACT  Raphanus sativus cv Early Scarlet Globe
EY907786       --> ......gggtTTTCCGCAACTCTCTTTACTTCTTCTCTTCTACCTCGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551198       --> ...........ggCCGCAACTCTCTTTACTTCTTATCTTCTACCTCGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908283       --> .................AACTCTCTTTACTTCTTCTCTTCTACCTCGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY438099       --> ............................................TCGACT  Raphanus sativus cv GSK3-1
EY905931       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX766159       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               51     -    101
UN19766        --> CTGATCTCTTTACAATGGCGTCGGAGAAGAAGCTGTCGAACCCCATGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543621       <-- CTGATCTCTTTACAATGGCGTCGGAGAAGAAGCTCTCGAACCCCATGAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD572769       <-- CTGATCTCTTTACAATGGCGTCGGAGAAGAAGCTGTCGAACCCCATGAGG  Raphanus sativus cv Early Scarlet Globe
FY430067       <-- CTGATCTCTTTACAATGGCGTCGGAGAAGAAGCTGTCGAACCCCATGAGG  Raphanus sativus cv GSK3-1
FY438417       <-- CTGATCTCTTTACAATGGCGTCGGAGAAGAAGCTGTCGAACCCCATGAGG  Raphanus sativus cv GSK3-1
FD944556       <-- CTGATCTCTTTACAATGGCGTCGGAGAAGAAGCTGTCGAACCCCATGAGG  Raphanus sativus cv Early Scarlet Globe
EY904003       <-- ................GGCGTCGGAGAAGAAGCTGTCGAACCCCATGAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912790       <-- ................................ctcTCGAACCCCATGAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730651       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV530087       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY894673       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX753911       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY902242       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537372       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX769842       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV525296       --> CTGATCTCTTTACAATGGCGTCGGAGAAGAAGCTGTCGAACCCCATGAGG  Raphanus raphanistrum subsp. maritimus
EV547816       --> CTGATCTCTTTACAATGGCGTCGGAGAAGAAGCTCTCGAACCCCATGAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750470       --> CTGATCTCTTTACAATGGCGTCGGAGAAGAAGCTGTCGAACCCCATGAGG  Raphanus raphanistrum subsp. maritimus
EY898693       --> CTGATCTCTTTACAATGGCGTCGGAGAAGAAGCTGTCGAACCCCATGAGG  Raphanus raphanistrum subsp. maritimus
EY917242       --> CTGATCTCTTTACAATGGCGTCGGAGAAGAAGCTCTCGAACCCCATGAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948824       --> CTGATCTCTTTACAATGGCGTCGGAGAAGAAGCTGTCGAACCCCATGAGG  Raphanus sativus cv Early Scarlet Globe
EY907786       --> CTGATCTCTTTACAATGGCGTCGGAGAAGAAGCTGTCGAACCCCATGAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551198       --> CTGATCTCTTTACAATGGCGTCGGAGAAGAAGCTCTCGAACCCCATGAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908283       --> CTGATCTCTTTACAATGGCGTCGGAGAAGAAGCTGTCGAACCCCATGAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY438099       --> CTGATCTCTTTACA-TGGCGTCGGAGAAGAAGCTGTCGAACCCCATGAGG  Raphanus sativus cv GSK3-1
EY905931       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX766159       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               101    -    151
UN19766        --> GACATTAAGGTCCAGAAACTTGTTCTCAACATCTCTGTGGGTGAGAGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543621       <-- GACATTAAGGTCCAGAAACTTGTTCTCAACATCTCTGTGGGTGAGAGTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD572769       <-- GACATTAAGGTCCAGAAACTTGTTCTTAACATCTCTGTGGGTGAGAGTGG  Raphanus sativus cv Early Scarlet Globe
FY430067       <-- GACATTAAGGTCCAGAAACTTGTTCTTAACATCTCTGTGGGTGAGAGTGG  Raphanus sativus cv GSK3-1
FY438417       <-- GACATTAAGGTCCAGAAACTTGTTCTTAACATCTCTGTGGGTGAGAGTGG  Raphanus sativus cv GSK3-1
FD944556       <-- GACATTAAGGTCCAGAAACTTGTTCTTAACATCTCTGTGGGTGAGAGTGG  Raphanus sativus cv Early Scarlet Globe
EY904003       <-- GACATTAAGGTCCAGAAACTTGTTCTCAACATCTCTGTGGGTGAGAGTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912790       <-- GACATTAAGGTCCAGAAACTTGTTCTCAACATCTCTGTGGGTGAGAGTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730651       <-- ...............AAACTTGTTCTTAACATCTCTGTGGGTGAGAGTGG  Raphanus sativus cv Early Scarlet Globe
EV530087       <-- .......................................GGTGAGAGTGG  Raphanus raphanistrum subsp. maritimus
EY894673       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX753911       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY902242       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537372       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX769842       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV525296       --> GACATTAAGGTCCAGAAACTTGTTCTCAACATCTCTGTGGGTGAGAGTGG  Raphanus raphanistrum subsp. maritimus
EV547816       --> GACATTAAGGTCCAGAAACTTGTTCTCAACATCTCTGTGGGTGAGAGTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750470       --> GACATTAAGGTCCAGAAACTTGTTCTCAACATCTCTGTGGGTGAGAGTGG  Raphanus raphanistrum subsp. maritimus
EY898693       --> GACATTAAGGTCCAGAAACTTGTTCTCAACATCTCTGTGGGTGAGAGTGG  Raphanus raphanistrum subsp. maritimus
EY917242       --> GACATTAAGGTCCAGAAACTTGTTCTCAACATCTCTGTGGGTGAGAGTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948824       --> GACATTAAGGTCCAGAAACTTGTTCTTAACATCTCTGTGGGTGAGAGTGG  Raphanus sativus cv Early Scarlet Globe
EY907786       --> GACATTAAGGTCCAGAAACTTGTTCTCAACATCTCTGTGGGTGAGAGTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551198       --> GACATTAAGGTCCAGAAACTTGTTCTCAACATCTCTGTGGGTGAGAGTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908283       --> GACATTAAGGTCCAGAAACTTGTTCTCAACATCTCTGTGGGTGAGAGTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY438099       --> GACATTAAGGTCCAGAAACTTGTTCTTAACATCTCTGTGGGTGAGAGTGG  Raphanus sativus cv GSK3-1
EY905931       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX766159       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN19766        --> TGATCGTCTCACTCGTGCCTCCAAGGTTTTGGAACAGCTCAGTGGACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543621       <-- TGATCGTCTCACTCGTGCCTCCAAGGTTTTGGAACAGCTCAGTGGACAAA
FD572769       <-- TGATCGTCTCACTCGTGCCTCCAAGGTTTTGGAACAGCTCAGTGGACAAA
FY430067       <-- TGATCGTCTCACTCGTGCCTCCAAGGTTTTGGAACAGCTCAGTGGACAAA
FY438417       <-- TGATCGTCTCACTCGTGCCTCCAAGGTTTTGGAACAGCTCAGTGGACAAA
FD944556       <-- TGATCGTCTCACTCGTGCCTCCAAGGTTTTGGAACAGCTCAGTGGACAAA
EY904003       <-- TGATCGTCTCACTCGTGCCTCCAAGGTTTTAGAACAGCTCAGTGGACAAT
EY912790       <-- TGATCGTCTCACTCGTGCCTCCAAGGTTTTGGAACAGCTCAGTGGACAAA
EW730651       <-- TGATCGTCTCACTCGTGCCTCCAAGGTTTTGGAACAGCTCAGTGGACAAA
EV530087       <-- TGATCGTCTCACTCGTGCCTCCAAGGTTTTGGAACAGCTCAGTGGACAAA
EY894673       <-- .....................CAAGGTTTTGGAACAGCTCAGTTGACAAA
EX753911       <-- ......................AAGGTTTTGGAACAGCTCAGTTGACAAA
EY902242       <-- ..................................................
FD537372       <-- ..................................................
EX769842       <-- ..................................................
EV525296       --> TGATCGTCTCACTCGTGCCTCCAAGGTTTTGGAACAGCTCAGTGGACAAA
EV547816       --> TGATCGTCTCACTCGTGCCTCCAAGGTTTTGGAACAGCTCAGTGGACAAA
EX750470       --> TGATCGTCTCACTCGTGCCTCCAAGGTTTTGGAACAGCTCAGTTGACAAA
EY898693       --> TGATCGTCTCACTCGTGCCTCCAAGGTTTTGGAACAGCTCAGTTGACAAA
EY917242       --> TGATCGTCTCACTCGTGCCTCCAAGGTTTTGGAACAGCTCAGTGGACAAA
FD948824       --> TGATCGTCTCACTCGTGCCTCCAAGGTTTTGGAACAGCTCAGTGGACAAA
EY907786       --> TGATCGTCTCACTCGTGCCTCCAAGGTTTTGGAACAGCTCAGTGGACAAA
EV551198       --> TGATCGTCTCACTCGTGCCTCCAAGGTTTTGGAACAGCTCAGTGGACAAA
EY908283       --> TGATCGTCTCACTCGTGCCTCCAAGGTTTTAGAACAGCTCAGTGGACAAT
FY438099       --> TGATCGTCTCACTCGTGCCTCCAAGGTTTTGGAACAGCTCAGTGGACAAA
EY905931       --> ..............................GGAACAGCTCAGTGGACAAT
EX766159       --> ..................................................

               201    -    251
UN19766        --> CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCTTTTGGTATCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543621       <-- CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCCTTCGGTATCAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD572769       <-- CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCTTTTGGTATCAGG  Raphanus sativus cv Early Scarlet Globe
FY430067       <-- CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCTTTTGGTATCAGG  Raphanus sativus cv GSK3-1
FY438417       <-- CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCTTTTGGTATCAGG  Raphanus sativus cv GSK3-1
FD944556       <-- CCCCTGCTTTCTCCAAGGCGAGATACACTGTGAGGTCTTTTGGTATCAGG  Raphanus sativus cv Early Scarlet Globe
EY904003       <-- CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCTTTTGGTATCAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912790       <-- CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCCTTCGGTATCAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730651       <-- CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCTTTTGGTATCAGG  Raphanus sativus cv Early Scarlet Globe
EV530087       <-- CCCCTGTTTCCTCCAAGGCGAGATACACTGTGAGGTCATTTGGTATCAGG  Raphanus raphanistrum subsp. maritimus
EY894673       <-- CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCATTTGGTATCAGG  Raphanus raphanistrum subsp. maritimus
EX753911       <-- CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCATTTGGTATCAGG  Raphanus raphanistrum subsp. maritimus
EY902242       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537372       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX769842       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV525296       --> CCCCTGTTTCCTCCAAGGCGAGATACACTGTGAGGTCATTTGGTATCAGG  Raphanus raphanistrum subsp. maritimus
EV547816       --> CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCCTTCGGTATCAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750470       --> CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCATTTGGTATCAGG  Raphanus raphanistrum subsp. maritimus
EY898693       --> CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCATTTGGTATCAGG  Raphanus raphanistrum subsp. maritimus
EY917242       --> CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCCTTCGGTATCAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948824       --> CCCCTGCTTTCTCCAAGGCGAGATACACTGTGAGGTCTTTTGGTATCAGG  Raphanus sativus cv Early Scarlet Globe
EY907786       --> CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCATTTGGTATCAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551198       --> CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCCTTCGGTATCAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908283       --> CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCTTTTGGTATCAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY438099       --> CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCTTTTGGTATCAGG  Raphanus sativus cv GSK3-1
EY905931       --> CCCCTGTTTTCTCCAAGGCGAGATACACTGTGAGGTCTTTTGGTATCAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX766159       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN19766        --> CGTAACGAAAAGATTGCGTGCTATGTCACTGTGAGAGGTGACAAGGCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543621       <-- CGTAACGAAAAGATTGCGTGCTATGTCACTGTGAGAGGAGACAAGGCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD572769       <-- CGTAATGAAAAGATTGCGTGCTATGTCACTGTGAGAGGTGACAAGGCTAT  Raphanus sativus cv Early Scarlet Globe
FY430067       <-- CGTAATGAAAAGATTGCGTGCTATGTCACTGTGAGAGGTGACAAGGCTAT  Raphanus sativus cv GSK3-1
FY438417       <-- CGTAATGAAAAGATTGCGTGCTATGTCACTGTGAGAGGTGACAAGGCTAT  Raphanus sativus cv GSK3-1
FD944556       <-- CGTAATGAAAAGATTGCGTGCTATGTCACTGTGAGAGGTGACAAGGCTAT  Raphanus sativus cv Early Scarlet Globe
EY904003       <-- CGTAACGAAAAGATTGCTTGCTATGTCACTGTGAGAGGCGACAAGGCTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912790       <-- CGTAACGAAAAGATTGCGTGCTATGTCACTGTGAGAGGTGACAAGGCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730651       <-- CGTAATGAAAAGATTGCGTGCTATGTCACTGTGAGAGGTGACAAGGCT-T  Raphanus sativus cv Early Scarlet Globe
EV530087       <-- CGTAACGAAAAGATTGCGTGCTATGTCACTGTGAGAGGTGACAAGGCTAT  Raphanus raphanistrum subsp. maritimus
EY894673       <-- CGTAACGAAAAGATTGCGTGCTATGTCACTGTGAGAGGTGACAAGGCTAT  Raphanus raphanistrum subsp. maritimus
EX753911       <-- CGTAACGAAAAGATTGCGTGCTATGTCACTGTGAGAGGTGACAAGGCTAT  Raphanus raphanistrum subsp. maritimus
EY902242       <-- ...AACGAAAAGATTGCTTGCTATGTCACTGTGAGAGGCGACAAGGCTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537372       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX769842       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV525296       --> CGTAACGAAAAGATTGCGTGCTATGTCACTGTGAGAGGTGACAAGGCTAT  Raphanus raphanistrum subsp. maritimus
EV547816       --> CGTAACGAAAAGATTGCGTGCTATGTCACTGTGAGAGGAGACAAGGCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750470       --> CGTAACGAAAAGATTGCGTGCTATGTCACTGTGAGAGGTGACAAGGCTAT  Raphanus raphanistrum subsp. maritimus
EY898693       --> CGTAACGAAAAGATTGCGTGCTATGTCACTGTGAGAGGTGACAAGGCTAT  Raphanus raphanistrum subsp. maritimus
EY917242       --> CGTAACGAAAAGATTGCGTGCTATGTCACTGTGAGAGGTGACAAGGCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948824       --> CGTAATGAAAAGATTGCGTGCTATGTCACTGTGAGAGGTGACAAGGCTAT  Raphanus sativus cv Early Scarlet Globe
EY907786       --> CGTAACGAAAAGATTGCGTGCTATGTCACTGTGAGAGGTGACAAGGCTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551198       --> CGTAACGAAAAGATTGCGTGCTATGTCACTGTGAGAGGTGACAAGGCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908283       --> CGTAACGAAAAGATTGCTTGCTATGTCACTGTGAGAGGCGACAAGGCTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY438099       --> CGTAATGAAAAGATTGCGTGCTATGTCACTGTGAGAGGTGACAAGGCTAT  Raphanus sativus cv GSK3-1
EY905931       --> CGTAACGAAAAGATTGCTTGCTATGTCACTGTGAGAGGCGACAAGGCTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX766159       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN19766        --> GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543621       <-- GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD572769       <-- GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA  Raphanus sativus cv Early Scarlet Globe
FY430067       <-- GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA  Raphanus sativus cv GSK3-1
FY438417       <-- GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA  Raphanus sativus cv GSK3-1
FD944556       <-- GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA  Raphanus sativus cv Early Scarlet Globe
EY904003       <-- GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912790       <-- GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730651       <-- GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA  Raphanus sativus cv Early Scarlet Globe
EV530087       <-- GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA  Raphanus raphanistrum subsp. maritimus
EY894673       <-- GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA  Raphanus raphanistrum subsp. maritimus
EX753911       <-- GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA  Raphanus raphanistrum subsp. maritimus
EY902242       <-- GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537372       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX769842       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV525296       --> GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA  Raphanus raphanistrum subsp. maritimus
EV547816       --> GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750470       --> GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA  Raphanus raphanistrum subsp. maritimus
EY898693       --> GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA  Raphanus raphanistrum subsp. maritimus
EY917242       --> GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948824       --> GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA  Raphanus sativus cv Early Scarlet Globe
EY907786       --> GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551198       --> GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908283       --> GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY438099       --> GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA  Raphanus sativus cv GSK3-1
EY905931       --> GCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX766159       --> ...........................................cttaaga  Raphanus raphanistrum subsp. raphanistrum (NY)

               351    -    401
UN19766        --> GGAACTTTAGTGACACTGGTTGCTTTGGATTCGGTATCCAAGAGCACATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543621       <-- GGAACTTTAGTGACACTGGTTGCTTTGGATTCGGTATCCAAGAGCACATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD572769       <-- GGAACTTTAGTGACACTGGTTGCTTTGGGTTCGGTATCCAAGAGCACATT  Raphanus sativus cv Early Scarlet Globe
FY430067       <-- GGAACTTTAGTGACACTGGTTGCTTTGGGTTCGGTATCCAAGAGCACATT  Raphanus sativus cv GSK3-1
FY438417       <-- GGAACTTTAGTGACACTGGTTGCTTTGGGTTCGGTATCCAAGAGCACATT  Raphanus sativus cv GSK3-1
FD944556       <-- GGAACTTTAGTGACACTGGTTGCTTTGGGTTCGGTATCCAAGAGCACATT  Raphanus sativus cv Early Scarlet Globe
EY904003       <-- GGAACTTTAGTGACACTGGTTGCTTTGGATTCGGTATCCAAGAGCACATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912790       <-- GGAACTTTAGTGACACTGGTTGCTTTGGATTCGGTATCCAAGAGCACATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730651       <-- GGAACTTTAGTGACACTGGTTGCTTTGGGTTCGGTATCCAAGAGCACATT  Raphanus sativus cv Early Scarlet Globe
EV530087       <-- GGAACTTTAGTGACACTGGTTGCTTTGGGTTCGGTATCCAAGAGCACATT  Raphanus raphanistrum subsp. maritimus
EY894673       <-- GGAACTTCAGTGACACTGGTTGCTTTGGATTCGGTATTCAGGAGCACATT  Raphanus raphanistrum subsp. maritimus
EX753911       <-- GGAACTTCAGTGACACTGGTTGCTTTGGATTCGGTATTCAGGAGCACATT  Raphanus raphanistrum subsp. maritimus
EY902242       <-- GGAACTTTAGTGACACTGGTTGCTTTGGATTCGGTATCCAAGAGCACATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537372       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX769842       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV525296       --> GGAACTTTAGTGACACTGGTTGCTTTGGGTTCGGTATCCAAGAGCACATT  Raphanus raphanistrum subsp. maritimus
EV547816       --> GGAACTTTAGTGACACTGGTTGCTTTGGATTCGGTATCCAAGAGCACATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750470       --> GGAACTTCAGTGACACTGGTTGCTTTGGATTCGGTATTCAGGAGCACATT  Raphanus raphanistrum subsp. maritimus
EY898693       --> GGAACTTCAGTGACACTGGTTGCTTTGGATTCGGTATTCAGGAGCACATT  Raphanus raphanistrum subsp. maritimus
EY917242       --> GGAACTTTAGTGACACTGGTTGCTTTGGATTCGGTATCCAAGAGCACATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948824       --> GGAACTTTAGTGACACTGGTTGCTTTGGGTTCGGTATCCAAGAGCACATT  Raphanus sativus cv Early Scarlet Globe
EY907786       --> GGAATTTCAGTGACACTGGTTGCTTTGGGTTCGGTATCCAAGAGCACATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551198       --> GGAACTTTAGTGACACTGGTTGCTTTGGATTCGGTATCCAAGAGCACATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908283       --> GGAACTTTAGTGACACTGGTTGCTTTGGATTCGGTATCCAAGAGCACATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY438099       --> GGAACTTTAGTGACACTGGTTGCTTTGGGTTCGGTATCCAAGAGCACATT  Raphanus sativus cv GSK3-1
EY905931       --> GGAACTTTAGTGACACTGGTTGCTTTGGATTCGGTATCCAAGAGCACATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX766159       --> atAACTTTATTGACACTGGCTGCTTTGGATTCGGTATCCAAGACCACATT  Raphanus raphanistrum subsp. raphanistrum (NY)

               401    -    451
UN19766        --> GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543621       <-- GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
FD572769       <-- GATCTTGGTATCAAGTATGATCCATCTACTGGTATTTACGGAATGGACTT
FY430067       <-- GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
FY438417       <-- GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
FD944556       <-- GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
EY904003       <-- GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
EY912790       <-- GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
EW730651       <-- GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
EV530087       <-- GATCTTGGTATCAAGTATGATCCATTTACTGGTATTTACGGAATGGACTT
EY894673       <-- GATCTTGGTATCAAGTATGATCCATCTACTGGTATTTACGGAATGGACTT
EX753911       <-- GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
EY902242       <-- GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
FD537372       <-- .............................................GACTT
EX769842       <-- ..................................................
EV525296       --> GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
EV547816       --> GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
EX750470       --> GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
EY898693       --> GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
EY917242       --> GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
FD948824       --> GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
EY907786       --> GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
EV551198       --> GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
EY908283       --> GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
FY438099       --> GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
EY905931       --> GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT
EX766159       --> GATCTTGGTATCAAGTATGATCCATCTACTGGTATCTACGGAATGGACTT

               451    -    501
UN19766        --> CTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543621       <-- CTATGTTGTTCTTGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD572769       <-- CTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus sativus cv Early Scarlet Globe
FY430067       <-- CTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus sativus cv GSK3-1
FY438417       <-- CTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus sativus cv GSK3-1
FD944556       <-- CTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus sativus cv Early Scarlet Globe
EY904003       <-- CTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGTCGTAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912790       <-- CTATGTTGTTCTTGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730651       <-- CTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus sativus cv Early Scarlet Globe
EV530087       <-- TTATGTTGTTTTCGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus raphanistrum subsp. maritimus
EY894673       <-- TTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus raphanistrum subsp. maritimus
EX753911       <-- CTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus raphanistrum subsp. maritimus
EY902242       <-- TTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGTCGTAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537372       <-- CTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX769842       <-- ........tttttGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV525296       --> CTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus raphanistrum subsp. maritimus
EV547816       --> CTATGTTGTTCTTGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750470       --> CTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus raphanistrum subsp. maritimus
EY898693       --> CTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus raphanistrum subsp. maritimus
EY917242       --> CTATGTTGTTCTTGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAG-T  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948824       --> CTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus sativus cv Early Scarlet Globe
EY907786       --> CTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551198       --> CTATGTTGTTCTTGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908283       --> CTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGTCGTAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY438099       --> CTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGCCGTAGGT  Raphanus sativus cv GSK3-1
EY905931       --> CTATGTTGTTCTCGAACGTCCAGGATACCGTGTGGCTCGTCGTCGTAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX766159       --> CTATGTTGTTCTTGAACGTCCAGGATACCGTGTGGCTC............  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN19766        --> GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543621       <-- GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
FD572769       <-- GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
FY430067       <-- GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
FY438417       <-- GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
FD944556       <-- GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
EY904003       <-- GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
EY912790       <-- GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
EW730651       <-- GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
EV530087       <-- GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATT
EY894673       <-- GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
EX753911       <-- GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
EY902242       <-- GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
FD537372       <-- GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
EX769842       <-- GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
EV525296       --> GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATT
EV547816       --> GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
EX750470       --> GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
EY898693       --> GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
EY917242       --> GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAAGATGATGCAATG
FD948824       --> GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
EY907786       --> GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
EV551198       --> GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
EY908283       --> GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
FY438099       --> GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
EY905931       --> GTAAGGCTCGTGTTGGTATCCAACACAGAGTGACCAAGGATGATGCAATG
EX766159       --> ..................................................

               551    -    601
UN19766        --> AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543621       <-- AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
FD572769       <-- AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
FY430067       <-- AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
FY438417       <-- AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
FD944556       <-- AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
EY904003       <-- AAATGGTTCCAAGTCAAGTATGAAGGAGCTATCCTCAACAAGTCTCAGAA
EY912790       <-- AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
EW730651       <-- AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
EV530087       <-- AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
EY894673       <-- AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
EX753911       <-- AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
EY902242       <-- AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
FD537372       <-- AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
EX769842       <-- AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAG........
EV525296       --> AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
EV547816       --> AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
EX750470       --> AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
EY898693       --> AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
EY917242       --> AAATGGTTCCAAGTCAAGTATGAAAGAGTTATCCTCAACAAGTCTCAGAA
FD948824       --> AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
EY907786       --> AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCA...
EV551198       --> AAATGGTTCCAAGCCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
EY908283       --> AAATGGTTCCAAGTCAAGTATGAAGGAGCTATCCTCAACAAGTCTCAGAA
FY438099       --> AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
EY905931       --> AAATGGTTCCAAGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAA
EX766159       --> ..................................................

               601    -    651
UN19766        --> CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543621       <-- CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
FD572769       <-- CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
FY430067       <-- CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
FY438417       <-- CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
FD944556       <-- CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
EY904003       <-- CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
EY912790       <-- CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
EW730651       <-- CATCACTGGTTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
EV530087       <-- CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
EY894673       <-- CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
EX753911       <-- CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
EY902242       <-- CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
FD537372       <-- CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
EX769842       <-- ..................................................
EV525296       --> CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
EV547816       --> CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
EX750470       --> CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
EY898693       --> CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
EY917242       --> CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
FD948824       --> CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
EY907786       --> ..................................................
EV551198       --> CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
EY908283       --> CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
FY438099       --> CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
EY905931       --> CATCACTGGCTAAACCAAACTTCAATCTTTATTGATTTTTGTTTATTTTA
EX766159       --> ..................................................

               651    -    701
UN19766        --> GTTTTATTTCAAGTTTCAATCTTTACGACTTTCTGGATGTTAAAGAATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543621       <-- GTTTTATTTCAAGTTTCAATCTTTACGACTTTCTGGATGTTAAAGAATTT
FD572769       <-- GTTTTATTTCAAGTTTCAATCTTTACGACTTTCTGGATGTTAAAGAATTT
FY430067       <-- GTTTTATTTCAAGTTTCAATCTTTACGACTTTCTGGATGTTAAAGAATTT
FY438417       <-- GTTTTATTTCAAGTTTCAATCTTTACGACTTTCTGGATGTTAAAGAATTT
FD944556       <-- GTTTTATTTCAAGTTTCAATCTTTACGACTTTCTGGATGTTAAAGAATTT
EY904003       <-- GTTTTATTTCAAGTTTCAGTCTTTACGACTTTCTGGATGTTAAAGAATTT
EY912790       <-- GTTTTATTTCAAGTTTCAATCTTTACGACTTTCTGGATGTTAAAGAATTT
EW730651       <-- GTTTTATTTCAAGTTTCAATCTTTACGACTTTCTGGATGTTAAAGAATTT
EV530087       <-- GTTTTATTTCAAGTTTCAATCTTTACGACTTTCCGGATGTTAAAGAATTT
EY894673       <-- GTTTTATTTCAAGTTTCAATCTTTACGACTTTCTGGATGTTAAAGAATTT
EX753911       <-- GTTTTATTTCAAGTTTCAATCTTTACGACTTTCTGGATGTTAAAGAATTT
EY902242       <-- GTTTTATTTCAAGTTTCAGTCTTTACGACTTTCTGGATGTTAAAGAATTT
FD537372       <-- GCTTTATTTCAAGTTTCAATCTTTACGACTTTCTGGATGTTAAAGAATTT
EX769842       <-- ..................................................
EV525296       --> GTTTTATTTCAAGTTTCAATCTTTACGACTTTCc................
EV547816       --> GTTTTATTTCAAGTTTCAATCTTTACGACTTTCTGGATGTTAAAGAATTT
EX750470       --> GTTTTATTTCAAGTTTCAATCTTTACGACTTTCTGGATGTTAAAGAATTT
EY898693       --> GTTTTATTTCAAGTTTCAATCTTTACGACTTTCTGGATGTTAAAGAATTT
EY917242       --> GTTTTATTTCAAGTTTCAATCTTTACGACTTTCTGGATGTTAAAGA--TT
FD948824       --> GTTTTATTTCAAGTTTCAATCTTTACGACTTTCTGGATGTTAAAGAATTT
EY907786       --> ..................................................
EV551198       --> GTTTTATTTCAAGTTTCAATCTTTACGACTTTCTGGATGCTAAAGAATTT
EY908283       --> GTTTTATTTCAAGTTTCAGTCTTTACGACTTTCTGGATGTTAAAGAATTT
FY438099       --> GTTTTATTTCAAGTTTCAATCTTTACGACTTTCTGGATGTTAAAGAATTT
EY905931       --> GTTTTATTTCAAGTTTCAGTCTTTACGACTTTCTGGATGTTAAAGAATTT
EX766159       --> ..................................................

               701    -    751
UN19766        --> TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGGTATAATCTGAATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543621       <-- TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGGTATAATCTGAATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD572769       <-- TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGGTATAATCTAAATTT  Raphanus sativus cv Early Scarlet Globe
FY430067       <-- TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGGTATAATCTAAATTc  Raphanus sativus cv GSK3-1
FY438417       <-- TTTGTTGTACTAAAACCTTTGCTGACATCAGCATGGT.............  Raphanus sativus cv GSK3-1
FD944556       <-- TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGGTATAATCTAAATTT  Raphanus sativus cv Early Scarlet Globe
EY904003       <-- TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGGTATAATCTGAATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912790       <-- TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGGTATAATCTGAATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730651       <-- TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGGTATAATCTAAATTT  Raphanus sativus cv Early Scarlet Globe
EV530087       <-- TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGG..............  Raphanus raphanistrum subsp. maritimus
EY894673       <-- TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGGTATAATCTAAATTT  Raphanus raphanistrum subsp. maritimus
EX753911       <-- TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGGTATAATCTAAATTT  Raphanus raphanistrum subsp. maritimus
EY902242       <-- TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGGTATAATCTGAATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537372       <-- TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGGTATAATCTGAATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX769842       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV525296       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV547816       --> TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGGTATAATCTGAATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750470       --> TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGGTATAATCTAAATTT  Raphanus raphanistrum subsp. maritimus
EY898693       --> TT-G-TGTACTAAAACCTTTGT-GACATCAGCATGGTATA-TCT-AATTT  Raphanus raphanistrum subsp. maritimus
EY917242       --> TTTGT-GTACTAAAACCTTTGT-GACATCAG...................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948824       --> TT-GTTGTACTAAAACCTTTGTTGACATCAGCATGGTATA..........  Raphanus sativus cv Early Scarlet Globe
EY907786       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551198       --> TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGGTA............  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908283       --> TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGGTATAATCTGA-TTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY438099       --> TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGGTATAATCTAAATTT  Raphanus sativus cv GSK3-1
EY905931       --> TTTGTTGTACTAAAACCTTTGTTGACATCAGCATGGTATAATCTGAATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX766159       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN19766        --> CCCAGAACGTTGACAGTGTTTTTACCTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543621       <-- CCCAGAACGTTGGCAGTGTTTTTACCTTTTC
FD572769       <-- CCC............................
FY430067       <-- cc.............................
FY438417       <-- ...............................
FD944556       <-- CCCAG..........................
EY904003       <-- CCC............................
EY912790       <-- CCC............................
EW730651       <-- CCC............................
EV530087       <-- ...............................
EY894673       <-- CCCAGAACGTTGACAGTGTTTTTACCTTTTC
EX753911       <-- CCCAGAACGTTGACAGTGTTTTTACCTTTTC
EY902242       <-- CCCAG..........................
FD537372       <-- CCCAGAACGTTG...................
EX769842       <-- ...............................
EV525296       --> ...............................
EV547816       --> CCC............................
EX750470       --> CCCAGAACGTTGACAG...............
EY898693       --> CCa............................
EY917242       --> ...............................
FD948824       --> ...............................
EY907786       --> ...............................
EV551198       --> ...............................
EY908283       --> CCC............................
FY438099       --> CCCAG..........................
EY905931       --> CCCAG..........................
EX766159       --> ...............................