Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN19768

               -1     -     49
UN19768        --> ..GGACATCATCCATTAACCTCCGCTCAACAGATATAAGCCATCATGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- ..................................................
EX768678       <-- ..................................................
EX771832       --> ..GGACATCATCCATTAACCGCCGCTCAACAGATATAAGCCATCATGTCT
EW735138       --> ...GACATCATCCATTAACCTCCGCTCAACAGATATAAGCCATCATGTCT
EX764833       --> ...GACATCATCCTTTAACCTCCGCTCAACAGATATAAGCCATCATGTCT
FD540514       --> ggacACATCATCCATTAACCTTCGCTCAACAGATATAAGCCATCATGCCT
FY432769       --> ......................................GCCATCATGTCT
FY432766       --> .............................................TGTCT
EX756340       --> ...............................................TCT

               49     -     99
UN19768        --> GAGTGGTTCACCCAACTCGAAGAGGTCGCGTACTCCGTAGTGGAATATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- ..................................................
EX768678       <-- ..................................................
EX771832       --> GAGTGGTTCACCCAACTCGAAGAGGTCGCGTACTCCGTAGTGGAATATAT
EW735138       --> GAGTGGTTCACCCAACTCGAAGATGTCGCGTACTCCGTAGTGGAATATAT
EX764833       --> GAGTGGTTCACCCAACTCGAAGATGTCGCGTACTCCGTAGTGGAATATAT
FD540514       --> GAGTGGTTCACCCAACTCGAAGAGGTCGCGTACTCCGTAGTGGAATATAT
FY432769       --> GAGTGGTTCACCCAACTCGAAGAGGTCGCGTACTCCGTAGTGGAATATAT
FY432766       --> GAGTGGTTCACCCAACTCGAAGAGGTCGCGTACTCCGTAGTGGAATATAT
EX756340       --> GAGTGGTTCACCCAACTCGAAGAGGTCGCGTACTCCGTAGTGGAATATAT

               99     -    149
UN19768        --> CCCACTAGTCGGCACCGTGTACTCTCTAAAACGAGCCACTATCGCATACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- ..................................................
EX768678       <-- ..................................................
EX771832       --> CCCACTAGTCGGCACCGTGTACTCTCTAAAACGAGCCACTATCGCATACA
EW735138       --> CCCACTAGTCGGCACCGTGTACTCTCTAAAACGAGCCACTATCGCATACA
EX764833       --> CACACTAGTCGGCACCGTGTACTCTCTAAAACGAGCCACTATCGCATACA
FD540514       --> CCCACTAGTCGGCACCGTGTACTCTCTAAAACGAGCCACTATCGCATACA
FY432769       --> CCCACTAGTCGGCACCGTGTACTCTCTAAAACGAGCCACTATCGCATACA
FY432766       --> CCCACTAGTCGGCACCGTGTACTCTCTAAAACGAGCCACTATCGCATACA
EX756340       --> CCCACTAGTCGGCACCGTGTACTCTCTAAAACGAGCCACTATCGCATACA

               149    -    199
UN19768        --> ACGCGAGGGATTGGACGCGACATTGGCAGTCCCTCGGCAACTTCCTCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- ..................................................
EX768678       <-- ..................................................
EX771832       --> ACGCGAGGGATTGGACGCGACATTGGCAGTCCCTCGGCAACTTCCTCGAG
EW735138       --> ACGCGAGGGATTGGACGCGACATTGGCAGTCCCTCGGCAACTTCCTCGAG
EX764833       --> ACGCGAGGGATTGGACGCGACATTGGCAGTCCCTCGGCAACTTCCTCGAG
FD540514       --> ACGCGAGGGATTGGACGCGACATTGGCAGTCCCTCGGCAACTTCCTCGAG
FY432769       --> ACGCGAGGGATTGGACGCGACATTGGCAGTCCCTCGGCAACTTCCTCGAG
FY432766       --> ACGCGAGGGATTGGACGCGACATTGGCAGTCCCTCGGCAACTTCCTCGAG
EX756340       --> ACGCGAGGGGTTGGACGCGACATTGGCAGTCCCTCGGCAACTTCCTCGAG

               199    -    249
UN19768        --> AGCTCCGTTCGCGATGTCATTCTCTTGAAAGACATTGCCGAACCCACCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- .............ATGTCAT-CTC-TGAAAGACAT-GCCGAACCCACCAC  Raphanus raphanistrum subsp. landra
EX768678       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX771832       --> AGCTCCGTTCGCGATGTCATTCTCTTGAAAGACATTGCCGAACCCACCAC  Raphanus raphanistrum subsp. landra
EW735138       --> AGCTCCGTTCGCGATGTCATTCTCTTCAAAGACATTGCCGAACCCACCAC  Raphanus sativus cv Rat-Tail Radish #3870
EX764833       --> AGCTCCGTTCGCGATGTCATTCTCTTCAAAGACATTGCCGAACCCACCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD540514       --> AGCTCCGTTCGCGATGTCATTCTCTTGAAAGACATTGTCGAACCCACCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FY432769       --> AGCTCCGTTCGCGATATCATTCTCTTCAAAGACATTGCCGAACCCACCAC  Raphanus sativus cv GSK3-1
FY432766       --> AGCTCCGTTCGCGATATCATTCTCTTCAAAGACATTGCCGAACCCACCAC  Raphanus sativus cv GSK3-1
EX756340       --> AGCTCCGTTCGCGATGTCATTCTCTTGAAAGACATTGCCGAACCCACCAC  Raphanus raphanistrum subsp. raphanistrum (MS)

               249    -    299
UN19768        --> AGTCGCCCTTATACACACCATGGCCGAGTCGTTGACGGACAAATTGATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- AGTCGCC-TTATACACACCATGGCCGAGTCGTTGACCGACAAAATGATTG  Raphanus raphanistrum subsp. landra
EX768678       <-- ............ACACACCATGGCCGAGTCGTTGACGGACAAATTGATTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX771832       --> AGTCGCCCTTATACACACCATGGCCGAGTCGTTGACCGACAAAATGATTG  Raphanus raphanistrum subsp. landra
EW735138       --> AGTCGCCCTTATACACACCATGGCCGAGTCGTTGACGGACAAATTGATTG  Raphanus sativus cv Rat-Tail Radish #3870
EX764833       --> AGTCGCCCTTATACACACCATGGCCGAGTCGTTGACG.............  Raphanus raphanistrum subsp. raphanistrum (NY)
FD540514       --> AGTCGCCCTTATACACACCATGGCCGAGTCGTTGACCGACAAAATGATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY432769       --> AGTCGCCCTTATACACACCATGGCCGAGTCGTTGACGGACAAATTGATTG  Raphanus sativus cv GSK3-1
FY432766       --> AGTCGCCCTTATACACACCATGGCCGAGTCGTTGACGGACAAATTGATTG  Raphanus sativus cv GSK3-1
EX756340       --> AGTCGCCCTTATACACACCATGGCCGAGTCGTTGACCGACAAAATGATTG  Raphanus raphanistrum subsp. raphanistrum (MS)

               299    -    349
UN19768        --> AGATCTACCATCACGAGCCCAAAAGGCCTGAGGTCAAAATCACCCAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- AGATCTACCATCACGAGCCCAAAAGGCCTGAGGTCAAAATCACCCAGAAG
EX768678       <-- AGATCTACCATCACGAGCCCAAAAGGCCTGAGGTCAAAATCACCTAGAAG
EX771832       --> AGATCTACCATCACGAGCCCAAAAGGCCTGAGGTCAAAATCACCCAGAAG
EW735138       --> AGATCTACCATCACGAGCCCAAAAGGCCTGAGGTCAAAATCACCCAGAAG
EX764833       --> ..................................................
FD540514       --> AGATCTACCATCACGAGCCCAAAAGGCCTGAGGTCAAAATCACCCAGAAG
FY432769       --> AGATCTACCATCACGAGCCCAAAAGGCCTGAGGTCAAAATCACCCAGAAG
FY432766       --> AGATCTACCATCACGAGCCCAAAAGGCCTGAGGTCAAAATCACCCAGAAG
EX756340       --> AGATCTACCATCACGAGCCCAAAAGGCCTGAGGTCAAAATCACCCAGAAG

               349    -    399
UN19768        --> CTGGATAAACAACTCGGACATGTACTCATCGCCGAGTCCTCAAAGGGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- CTGGATAAACAACTCGGACATGTACTCATCGCCGAGTCCTCAAAGGGCAG
EX768678       <-- CTGGATAAACAACTCGGACATGTACTCATCGCCGAGTCCTCAAAGGGCAG
EX771832       --> CTGGATAAACAACTCGGACATGTACTCATCGCCGAGTCCTCAAAGGGCAG
EW735138       --> CTGGATAAACAACTCGGACATGTACTCATCGCCGAGTCCTCAAAGGGCAG
EX764833       --> ..................................................
FD540514       --> CTGGATAAACAACTCGGACATGTACTCATCGCCGAGTCCTCAAAGGGCAG
FY432769       --> CTGGATAAACAACTCGGACATGTACTCATCGCCGAGTCCTCAAAGGGCAG
FY432766       --> CTGGATAAACAACTCGGACATGTACTCATCGCCGAGTCCTCAAAGGGCAG
EX756340       --> CTGGATAAACAACTCGGACATGTACTCATCGCCGAGTCCTCAAA......

               399    -    449
UN19768        --> GTCCAAGAGAGAAGTCTTCGGAGGCAAAGCCAAGGGTGTGCACCACTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- GTCCAAGAGAGAAGTCTTCGGAGGCAAAGCCAAGGGTGTGCACCACTTTC
EX768678       <-- GTCCAAGAGAGAAGTCTTCGGAGGCAAAGCCAAGGGTGTGCACCACTTTC
EX771832       --> GTCCAAGAGAGAAGTCTTCGGAGGCAAAGCCAAGGGTGTGCACCACTTTC
EW735138       --> GTCCAAGAGAGAAGTCTTCGGAGGCAAAGCCAAGGGTGTGCACCACTTTC
EX764833       --> ..................................................
FD540514       --> GTCCAAGCGTGAAGTCTTCGGCGGCAAAGCCAAGGGTGTGCACCACTTTC
FY432769       --> GTCCAAGAGAGAAGTCTTCGGAGGCAAAGCCAAGGGTGTGCACCACTTTC
FY432766       --> GTCCAAGAGAGAAGTCTTCGGAGGCAAAGCCAAGGGTGTGCACCACTTTC
EX756340       --> ..................................................

               449    -    499
UN19768        --> ACGGCGCTGTCTTCACTGGTACGATCACTCACCCCGAATATGCTCCAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- ACGGCGCTGTCTTCACTGGTACGATCACTCACCCCGAATATGCTCCAAAG
EX768678       <-- ACGGCGCTGTCTTCACTGGTACGATCACTCACCCCGAATATGCTCCAAAG
EX771832       --> ACGGCGCTGTCTTCACTGGTACGATCACTCACCCCGAATATGCTCCAAAG
EW735138       --> ACGGCGCTGTCTTCACTGGTACGATCACTCACCCCGAATATGCTCCAAAG
EX764833       --> ..................................................
FD540514       --> ACAGCGCTGTCTTCACTGGTACGATCACTCACCCCGAATATGCTCCAAAG
FY432769       --> ACGGCGCTGTCTTCACTGGTACGATCACTCACCCCGAATATGCTCCAAAG
FY432766       --> ACGGCGCTGTCTTCACTGGTACGATCACTCACCCCGAATATGCTCCAAAG
EX756340       --> ..................................................

               499    -    549
UN19768        --> GGCGAGAAGATCCGGCTTGATATTCCGCACGGATTCCACGACGGGGCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- GGCGAGAAGATCCGGCTTGATATTCCGCACGGATTCCACGACGGGGCAGG
EX768678       <-- GGCGAGAAGATCCGGCTTGATATTCCGCACGGATTCCACGACGGGGCATG
EX771832       --> GGCGAGAAGATCCGGCTTGATATTCCGCACGGATTCCACGACGGGGCAGG
EW735138       --> GGCGAGAAGATCCGGCTTGATATTCCGCACGGATTCCACGACGGGGCAGG
EX764833       --> ..................................................
FD540514       --> GGCGAGAAGATCCGGCTTGATATTCCGCACGGATTCCACGACGGGGCAGG
FY432769       --> GGCGAGAAGATCCGGCTTGATATTCCGCACGGATTCCACGACGGGGCAGG
FY432766       --> GGCGAGAAGATCCGGCTTGATATTCCGCACGGATTCCACGACGGGGCAGG
EX756340       --> ..................................................

               549    -    599
UN19768        --> AGTCACCTTCACGTGGAAATGGACTATAAACAGAGCTGGAAAAAAGAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- AGTCACCTTCACGTGGAAATGGACTATAAACATAGCTGGAAAAAAGAATG
EX768678       <-- AGTCACCTTCACGTGGAAATGGACTATAAACAGAGCTGGAAAAAAGAATG
EX771832       --> AGTCACCTTCACGTGGAAATGGACTATAAACATAGCTGGAAAAAAGAATG
EW735138       --> AGTCACCTTCACGTGGAAATGGACTATAAACAGAGCTGGAAAAAAGAATG
EX764833       --> ..................................................
FD540514       --> AGTCACCTTCACGTGGAAATGGACTATAAACAGAGCTGGAAAAAAGAATG
FY432769       --> AGTCACCTTCACGTGGAAATGGACTATAAACAGAGCTGGAAAAAAGAATG
FY432766       --> AGTCACCTTCACGTGGAAATGGACTATAAACAGAGCTGGAAAAAAGAATG
EX756340       --> ..................................................

               599    -    649
UN19768        --> CACCTGCAGCCACGTATGGTCGTATTAAACTGATCTCCGGCACACCCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- CACCTGCAGCCACGTATGGTCGTATTAAACTGATTTCCGGCACACCCACA
EX768678       <-- CACCTGCAGCCACGTATGGTCGTATTAAACTGATCTCCGGCACACCCACA
EX771832       --> CACCTGCAGCCACGTATGGTCGTATTAAACTGATCTCCGGCACACCCA..
EW735138       --> CACCTGCAGCCACGTATGGTCGTATTAAACTGATCTCCGGCACACCCACA
EX764833       --> ..................................................
FD540514       --> CACCTGCAGCCACGTATGGTCGTATTAAACTGATCTCCGGCACACCCACA
FY432769       --> CACCTGCAGCCACGTATGGTCGTATTAAACTGATCTCCGGCACACCCACA
FY432766       --> CACCTGCAGCCACGTATGGTCGTATTAAACTGATCTCCGGCACACCCACA
EX756340       --> ..................................................

               649    -    699
UN19768        --> CGGTTCGAATTGTCCAGCCACAAGGGTGCCGGATGGGAAGGTTATAACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- CGGTTCGAATTGTCCAGCCACAAGGGTGCCGGATGGGAAGGTTATAACTT
EX768678       <-- CGGTTCGAATTGTCCAGCCACAAGGGTGCCGGATGGGAAGGTTATAACTT
EX771832       --> ..................................................
EW735138       --> CG-TTCGAATTGTC-AGCCA..............................
EX764833       --> ..................................................
FD540514       --> CGGTTCGAATTGTCCAGCCACAAGGGTGCCGGATGGGAAGGTTATAACTT
FY432769       --> CGGTTCGAATTGTCCAGCCACAAGGGTGCCGGATGGGAAGGTTATAACTT
FY432766       --> CGGTTCGAATTGTCCAGCCACAAGGGTGCCGGATGGGAAGGTTATAACTT
EX756340       --> ..................................................

               699    -    749
UN19768        --> TTCCGGTGAGATAAACTCCAAGGACAAAATCAAGGCTACAACCACAGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- TTCCGGTGAGATAAACTCCAAGGACAAAATCAAGGCTACAACCACAGTCG
EX768678       <-- TTCCGGTGAGATAAACTCCAAGGACAAAATCAAGGCTACAACCACAGTCG
EX771832       --> ..................................................
EW735138       --> ..................................................
EX764833       --> ..................................................
FD540514       --> TTCCGGTGAGATAAACTCCAAGGACAAAATCAAG-CTACAACCACAATCG
FY432769       --> TTCCGGTGAGATAAACTCCAAGGACAAAATCAAGGCTACAACCACAGTCG
FY432766       --> TTCCGGTGAGATAAACTCCAAGGACAAAATCAAGGCTACAACCACAGTCG
EX756340       --> ..................................................

               749    -    799
UN19768        --> GTGGTAGAAACATTCCACCGATTGACTTCACAAGGTTGGCCGGAACTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- GTGGTAGAAACATTCCACCGATTGACTTCACAAGGTTGGCCGGAACTTGA
EX768678       <-- GTGGTAGAAACATTCCACCGATTGACTTCACAAGGTTGGCCGGAACTTGA
EX771832       --> ..................................................
EW735138       --> ..................................................
EX764833       --> ..................................................
FD540514       --> GTGGTAGAAACA......................................
FY432769       --> GTGGTAGAAACATTCCACCGATTGACTTCACAAGGTTGGCCGGAACTTGA
FY432766       --> GTGGTAGAAACATTCCACCGATTGACTTCACAAGGTTGGCCGGAACTTGA
EX756340       --> ..................................................

               799    -    849
UN19768        --> AGTATACAAGCACCTGAACCTGGCCCTTTCAACAGCAGCGAGACCCTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- AGTATACAAGCACCTGAACCTGGCCCTTTCAACAGCAGCGAGACCCTCTA
EX768678       <-- AGTATACAAGCACCTGAACCTGGCCCTTTCAACAGCAGCGAGACCCTCTA
EX771832       --> ..................................................
EW735138       --> ..................................................
EX764833       --> ..................................................
FD540514       --> ..................................................
FY432769       --> AGTATACAAGCACCTGAACCTGGCCCTTTCAACAGCAGCGAGACCCTCTA
FY432766       --> AGTATACAAGCACCTGAACCTGGCCCTTTCAACAGCAGCGAGACCCTCTA
EX756340       --> ..................................................

               849    -    899
UN19768        --> CTACTAAATAATTTCTCGTTGTTTTTTT-CATTTTCAGTACTTGAATAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- CTACTAAATAATTTCTCGTTGTTTTTTT-CATTTTCAGTACTTGAATAAT
EX768678       <-- CTACTAAATAATTTCTCGTTGTTTTTTTTCATTTTCAGTACTTGAATAAT
EX771832       --> ..................................................
EW735138       --> ..................................................
EX764833       --> ..................................................
FD540514       --> ..................................................
FY432769       --> CTACTAAATAATTTCTCGTTGTTTTT........................
FY432766       --> CTACTAAATAATTTCTCGTTGTTTTTTT-CATTTTCAGTACTTGAATAAT
EX756340       --> ..................................................

               899    -    949
UN19768        --> GCTAATAGATAGACAATGGATGTTTCCCTTGTTTATTTGGATTTAGCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- GCTAATAGATAGACAATGGATGTTTCCCTTGTTTATTTGGATTTAGCTTT
EX768678       <-- GCTAATAGATAGACAATAGATTTTTCCCTTGTTTATTTGGATTTAGCTTT
EX771832       --> ..................................................
EW735138       --> ..................................................
EX764833       --> ..................................................
FD540514       --> ..................................................
FY432769       --> ..................................................
FY432766       --> GGCTATAGATAGACAATGGATGTTTCCCTTGTTTATTTG...........
EX756340       --> ..................................................

               949    -    999
UN19768        --> ATTATCTTTAATAGTTTTGTAATATCATTATATTAATAAAAGTCTGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775915       <-- ATTATCTTTAATAGTTTTGTAATATCATTATATTAATAAAAGTCTGGATC
EX768678       <-- ATTATCTTTAATAGTTTTGTAATATCATTATATTAATAAAAATCTGGATC
EX771832       --> ..................................................
EW735138       --> ..................................................
EX764833       --> ..................................................
FD540514       --> ..................................................
FY432769       --> ..................................................
FY432766       --> ..................................................
EX756340       --> ..................................................

               999    -   1049
UN19768        --> CTCTTGTGGAGGTCTGACGC
                   ~~~~~~~~~~~~~~~~~~~~
EX775915       <-- CTCTTGTGGAGGTCTGACcc
EX768678       <-- CTCTTGTGGAGGTCTGACGC
EX771832       --> ....................
EW735138       --> ....................
EX764833       --> ....................
FD540514       --> ....................
FY432769       --> ....................
FY432766       --> ....................
EX756340       --> ....................