Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN19947

               1      -     51
UN19947        --> GGTAATAATTTTACTCTTTTAAGGTTGTTCTTATTATTTGCTCCTCTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724168       <-- GGTAATAATTTTACTCTTTTAAGGTTGTTCTTATTATTTGCTCCTCTATT
EX747471       <-- ............ACTCTTTTAAGGTTGTTCTTATTATTTGCTCCTCTATT
FD568909       <-- ............ACTCTTTTAAGGTTGTTCTTATTATTTGCTCCTCTATT
FD964072       <-- ............gCTCTTTTAAGGTTGTTCTTATTATTTGCTCCTCTATT
EV565941       <-- ..................................................
EX770290       <-- ..................................................
EW714792       <-- ..................................................
EY924478       <-- ..................................................
EV569149       <-- ..................................................
EY933073       <-- ..................................................
EV538353       <-- ..................................................
FD948102       <-- ..................................................
EW728703       --> GGTAATAATTTTACTCTTTTAAGGTTGTTCTTATTATTTGCTCCTCTATT
FD960192       --> ............gCTCTTTTAAGGTTGTTCTTATTATTTGCTCCTCTATT
EV573740       --> ..................................................
EY928645       --> ..................................................
EW718943       --> ..................................................
FD943937       --> ..................................................

               51     -    101
UN19947        --> AATAATAAGGGGATATAGAGAGAGAGCGCTCTTGGAAAAAAAATTTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724168       <-- AATAATAAGGGGATATAGAGAGAGAGCGCTCTTGGAAAAAAAATTTTCTT
EX747471       <-- AATAATAAGGGGATATAGAGAGAGAGCGCTCTTGGAAAAAAAATTTTCTT
FD568909       <-- AATAATAAGGGGATATAGAGAGAGAGCGCTCTTGGAAAAAAAATTTTCTT
FD964072       <-- AATAATAAGGGGATATAGAGAGAGAGCGCTCTTGGAAAAAAAATTTTCTT
EV565941       <-- AATAATAAGGGGATATAGAGAGAGAGCGCTCTTGGAAAAAAAATTTTCTT
EX770290       <-- .................................GGAAAAAAAATTTTCTT
EW714792       <-- ..................................................
EY924478       <-- ..................................................
EV569149       <-- ..................................................
EY933073       <-- ..................................................
EV538353       <-- ..................................................
FD948102       <-- ..................................................
EW728703       --> AATAATAAGGGGATATAGAGAGAGAGCGCTCTTGGAAAAAAAATTTTCTT
FD960192       --> AATAATAAGGGGATATAGAGAGAGAGCGCTCTTGGAAAAAAAATTTTCTT
EV573740       --> ..................................................
EY928645       --> ..................................................
EW718943       --> ..................................................
FD943937       --> ..................................................

               101    -    151
UN19947        --> ACACTTAATACTAGCTCCTCACATGGAGTAGAGATTGTTATTCATTATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724168       <-- ACACTTAATACTAGCTCCTCACATGGAGTAGAGATTGTTATTCATTATTT
EX747471       <-- ACACTTAATACTAGCTCCTCACATGGAGTAGAGATTGTTATTCATTATTT
FD568909       <-- ACACTTAATACTAGCTCCTCACATGGAGTAGAGATTGTTATTCATTATTT
FD964072       <-- ACACTTAATACTAGCTCCTCACATGGAGTAGAGATTGTTATTCATTATTT
EV565941       <-- ACACTTAATACTAGCTCCTCACATGGAGTAGAGATTGTTATTCATTATTT
EX770290       <-- ACACTTAATACTAGCTCCTCACATGGAGTAGAGATTGTTATTCATTATTT
EW714792       <-- gCACTTAATACTAGCTCCTCACATGGAGTAGAGATTGTTATTCATTATTT
EY924478       <-- .CACTTAATACTAGCTCCTCACATGGAGTAGAGATTGTTATTCATTATTT
EV569149       <-- atACTTAATACTAGCTCCTCACATGGAGTAGAGATTGTTATTCATTATTT
EY933073       <-- ...CTTAATAGTAGCTCCTCACATGGAGTAGAGATTGTTATTCATTATTT
EV538353       <-- .....................CATGGAATAGGGATCGTTATTCATTATTT
FD948102       <-- .........................................TCATTATTT
EW728703       --> ACACTTAATACTAGCTCCTCACATGGAGTAGAGATTGTTATTCATTATTT
FD960192       --> ACACTTAATACTAGCTCCTCACATGGAGTAGAGATTGTTATTCATTATTT
EV573740       --> atACTTAATACTAGCTCCTCACATGGAGTAGAGATTGTTATTCATTATTT
EY928645       --> ...CTTAATAGTAGCTCCTCACATGGAGTAGAGATTGTTATTCATTATTT
EW718943       --> .......................................ATTCATTATTT
FD943937       --> .........................................TCATTATTT

               151    -    201
UN19947        --> AACGTTAGA-TAATAGAAGTATGAAAGTATTTGAA-TATATAATTATAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724168       <-- AACGTTAGA-TAATAGAAGTATGAAAGTATTTGAA-TATATAATTATAAA  Raphanus sativus cv Early Scarlet Globe
EX747471       <-- AACGTTAGA-TAATAGAAGTATGAAAGTATTTGAA-TATATAATTATAAA  Raphanus raphanistrum subsp. maritimus
FD568909       <-- AACGTTAGA-TAATAGAAGTATGAAAGTATTTGAA-TATATAATTATAAA  Raphanus sativus cv Early Scarlet Globe
FD964072       <-- AACGTTAGA-TAATAGAAGTATGAAAGTATTTGAA-TATATAATTATAAA  Raphanus raphanistrum subsp. maritimus
EV565941       <-- AACGTTAGA-TAATAGAAGTATGAAAGTATTTGAA-TATATAATTATAAA  Raphanus raphanistrum subsp. landra
EX770290       <-- AACGTTAGA-TAATAGAAGTATGAAAGTATTTGAA-TATATAATTATAAA  Raphanus raphanistrum subsp. landra
EW714792       <-- AACATTAGA-TAATAGAAGTATGAAAGTATTTGAAATATATAATTATAAA  Raphanus sativus var. oleiformis
EY924478       <-- AACGTTAGA-TAATAGAAGTATGAAAATATTTGAAATATATAATTATAAA  Raphanus raphanistrum subsp. landra
EV569149       <-- AACGTTAGA-TAATAGAAGTATGAAAATATTTGAAATATATAATTATAAA  Raphanus raphanistrum subsp. landra
EY933073       <-- AACGTTAGA-TAATAGAAGTATGAAAGTATTTGAAATATATAATTATAAA  Raphanus sativus var. oleiformis
EV538353       <-- AACGTTAGAATAATAGAAGTATGAAAGTATTTGAAATATATAATTATAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD948102       <-- AACGTTAGA-TAATAGAAGTATGAAAGTATTTGAA-TATATAATTATAAA  Raphanus sativus cv Early Scarlet Globe
EW728703       --> AACGTTAGA-TAATAGAAGTATGAAAGTATTTGAA-TATATAATTATAAA  Raphanus sativus cv Early Scarlet Globe
FD960192       --> AACGTTAGA-TAATAGAAGTATGAAAGTATTTGAA-TATATAATTATAAA  Raphanus raphanistrum subsp. maritimus
EV573740       --> AACGTTAGA-TAATAGAAGTATGAAAATATTTGAAATATATAATTATAAA  Raphanus raphanistrum subsp. landra
EY928645       --> AACGTTAGA-TAATAGAAGTATGAAAGTATTTGAAATATATAATTATAAA  Raphanus sativus var. oleiformis
EW718943       --> AACATTAGA-TAATAGAAGTATGAAAGTATTTGAAATATATAATTATAAA  Raphanus sativus var. oleiformis
FD943937       --> AACGTTAGA-TAATAGAAGTATGAAAGTATTTGAA-TATATAATTATAAA  Raphanus sativus cv Early Scarlet Globe

               201    -    251
UN19947        --> AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724168       <-- AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA
EX747471       <-- AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA
FD568909       <-- AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA
FD964072       <-- AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA
EV565941       <-- AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA
EX770290       <-- AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA
EW714792       <-- AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA
EY924478       <-- AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA
EV569149       <-- AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA
EY933073       <-- AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA
EV538353       <-- AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA
FD948102       <-- AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA
EW728703       --> AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA
FD960192       --> AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA
EV573740       --> AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA
EY928645       --> AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA
EW718943       --> AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA
FD943937       --> AATACTCTTCTGAAAATTCAAGTGCGCCCCTGGATACAAATTCTCTCGCA

               251    -    301
UN19947        --> TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724168       <-- TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT
EX747471       <-- TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT
FD568909       <-- TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT
FD964072       <-- TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT
EV565941       <-- TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT
EX770290       <-- TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT
EW714792       <-- TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT
EY924478       <-- TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT
EV569149       <-- TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT
EY933073       <-- TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT
EV538353       <-- TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT
FD948102       <-- TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT
EW728703       --> TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT
FD960192       --> TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT
EV573740       --> TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT
EY928645       --> TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT
EW718943       --> TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT
FD943937       --> TTCAGATTTGGCGATTCGGCACTGCTTATGTCCCACGTTGCAGCACCAAT

               301    -    351
UN19947        --> CTTTATGTTGTGGTCTAGAGAGGCATGCTGCAGTAGTTTTTTTCAGGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724168       <-- CTTTATGTTGTGGTCTAGAGAGGCATGCTGCAGTAGTTTTTTTCAGGTTG
EX747471       <-- CTTTATGTTGTGGTCTAGAGAGGCATGCTGCAGTAGTTTTTT-CAGGTTG
FD568909       <-- CTTTATGTTGTGGTCTAGAGAGGCATGCTGCAGTAGTTTTTTTCAGGTTG
FD964072       <-- CTTTATGTTGTGGTCTAGAGAGGCATGCTGCAGTAGTTTTTTTCAGGTTG
EV565941       <-- CTTTATGTTGTGGTCTAGAGAGGCATGCTGCAGTAGTTTTTTTCAGGTTG
EX770290       <-- CTTTATGTTGTGGTCTAGAGAGGCATGCTGCAGTAGTTTTTTTCAGGTTG
EW714792       <-- CTTTATGTTGTGGTCTAGAGAGGCATGCTGCAGTAGTTTTTTTCAGATTG
EY924478       <-- CTTTATGTTGTGGTCTAGAGAGGCATACTGCTGTAGTTTTTTTCAGGTTT
EV569149       <-- CTTTATGTTGTGGTCTAGAGAGGCATGCTGCTGTAGTTTTTTTCAGGTTT
EY933073       <-- CTTTATGTTGTGGTCTAGAGACGCATGCTGCAGTAGTTTTTTTCAGGTTG
EV538353       <-- CTTTATGTTGTGGTCTAGAGAGGCATGCTGCAGTAGTTTTTTTCAGGTTG
FD948102       <-- CTTTATGTTGTGGTCTAGAGAGGCATGCTGCAGTAGTTTTTTTCAGGTTG
EW728703       --> CTTTATGTTGTGGTCTAGAGAGGCATGCTGCAGTAGTTTTTTTCAGGTTG
FD960192       --> CTTTATGTTGTGGTCTAGAGAGGCATGCTGCAGTAGTTTTTTTCAGGTTG
EV573740       --> CTTTATGTTGTGGTCTAGAGAGGCATGCTGCTGTAGTTTTTTTCAGGTTT
EY928645       --> CTTTATGTTGTGGTCTAGAGACGCATGCTGCAGTAGTTTTTTTCAGGTTG
EW718943       --> CTTTATGTTGTGGTCTAGAGAGGCATGCTGCAGTAGTTTTTTTCAGATTG
FD943937       --> CTTTATGTTGTGGTCTAGAGAGGCATGCTGCAGTAGTTTTTTTCAGGTTG

               351    -    401
UN19947        --> GCACATTCATGAAAACTAGTGAAAAAAAGTAAGACAATACAAAAAATAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724168       <-- GCACATTCATGAAAACTAGCGAAAAAAAGTAAGACAATACAAAAAATAGT  Raphanus sativus cv Early Scarlet Globe
EX747471       <-- GCACATTCATGAAAACTAGTGAAAAAAAGTAAGACAATACAAAAAATAGT  Raphanus raphanistrum subsp. maritimus
FD568909       <-- GCACATTCATGAAAACTAGTGAAAAAAAGTAAGACAATACAAAAAATAGT  Raphanus sativus cv Early Scarlet Globe
FD964072       <-- GCACATTCATGAAAACTAGTGAAAAAAAGTAAGACAATACAAAAAATAGT  Raphanus raphanistrum subsp. maritimus
EV565941       <-- GCACATTCATGAAAACTAGTGAAAAAA-GTAAGACAATACAAAAAATAGT  Raphanus raphanistrum subsp. landra
EX770290       <-- GCACATTCATGAAAACTAGTGAAAAAA-GTAAGACAATACAAAAAATAGT  Raphanus raphanistrum subsp. landra
EW714792       <-- GCACATTCATGAAAACTAGTTAAAAAAAGTAAGACAATACAAAAAATAGT  Raphanus sativus var. oleiformis
EY924478       <-- GCACATTCATGAAAACTAGTTAAAAAAAGTAAGACAATACAAAAAATAGT  Raphanus raphanistrum subsp. landra
EV569149       <-- GCACATTCATGAAAACTAGTTAAAAAAAGTAAGACAATACAAAAAATAGT  Raphanus raphanistrum subsp. landra
EY933073       <-- GCACATTCATGAAAACTAGTTAAAAAAAGTAAGACAATACAAAAAATAGT  Raphanus sativus var. oleiformis
EV538353       <-- GCACATTCATGAAAACTAGTGAGAAAAAGTAAGACAATACAAAAAATAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD948102       <-- GCACATTCATGAAAACTAGTGAAAAAAAGTAAGACAATACAAAAA-TAGT  Raphanus sativus cv Early Scarlet Globe
EW728703       --> GCACATTCATGAAAACTAGCGAAAAAAAGTAAGACAATACAAAAAATAGT  Raphanus sativus cv Early Scarlet Globe
FD960192       --> GCACATTCATGAAAACTAGTGAAAAAAAGTAAGACAATACAAAAAATAGT  Raphanus raphanistrum subsp. maritimus
EV573740       --> GCACATTCATGAAAACTAGTTAAAAAAAGTAAGACAATACAAAAAATAGT  Raphanus raphanistrum subsp. landra
EY928645       --> GCACATTCATGAAAACTAGTTAAAAAAAGTAAGACAATACAAAAAATAGT  Raphanus sativus var. oleiformis
EW718943       --> GCACATTCATGAAAACTAGTTAAAAAAAGTAAGACAATACAAAAAATAGT  Raphanus sativus var. oleiformis
FD943937       --> GCACATTCATGAAAACTAGTGAAAAAAAGTAAGACAATACAAAAA-TAGT  Raphanus sativus cv Early Scarlet Globe

               401    -    451
UN19947        --> AATTTTAGATGTTGACATTGTAACAATTTTCTGTAAATAAATGTTTAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724168       <-- AATTTTAGATGTTGACATTGTAACAATTTTCTGTAAATAAATGTTTAGTG
EX747471       <-- AATTTTAGATGTTGACATTGTAACAATTTTCTGTAAATAAATGTTTAGTG
FD568909       <-- AATTTTAGATGTTGACATTGTAACAATTTTCTGTAAATAAATGTTTAGTc
FD964072       <-- AATTTTAGATGTTGACATTGTAACAATTTTCTGTAAATAAATGTTTAGTG
EV565941       <-- AATTTTAGATGTTGACATTGTAACAATTTTCTGTAAATAAATGTTTAGTG
EX770290       <-- AATTTTAGATGTTGACATTGTAACAATTTTCTGTAAATAAATGTTTAGTG
EW714792       <-- AATTTTAGATGTTGACATTGTAACAATTTTCTGTAAATAAATGTTTAGGG
EY924478       <-- AATTTTAGATGTTGACATTGTAACAATTTTCTGTAAATAAATGTTTAGGG
EV569149       <-- AATTTTAGATGTTGACATTGTAACAATTTTCTGTAAATAAATGTTTAGGG
EY933073       <-- AACTTTAGATGTTGACATTGTAACAATTTTCTGTAAATAAATGTTTAGTG
EV538353       <-- AATTTTAGATGTTGACATTGTAACAATTTTCCGTAAATAAATGTTTAGTG
FD948102       <-- AATTTTAGATGTTGACATTGTAACAATTTTCTGTAAATAAATGTTTAGTG
EW728703       --> AATTTTAGATGTTGACATTGTAACAATTTTCTGTAAATAAATGTTTAGTG
FD960192       --> AATTTTAGATGTTGACATTGTAACAATTTTCTGTAAATAAATGTTTAGTG
EV573740       --> AATTTTAGATGTTGACATTGTAACAATTTTCTGTAAATAAATGTTTAGGG
EY928645       --> AACTTTAGATGTTGACATTGTAACAATTTTCTGTAAATAAATGTTTAGTG
EW718943       --> AATTTTAGATGTTGACATTGTAACAATTTTCTGTAAATAAATGTTTAGGG
FD943937       --> AATTTTAGATGTTGACATTGTAACAATTTTCTGTAAATAAATGTTTAGTG

               451    -    501
UN19947        --> TGTTTTTTT-GATAAATGTTCAGTGTGTTTATCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724168       <-- TGTTTTTTT-GATAAATGTTCAGTGTGTTTATCC.
EX747471       <-- TGTTTTTTC-GATAAATGTTCAGTGTGTTTATCC.
FD568909       <-- ...................................
FD964072       <-- TGTTTTTTT-GATAAATGTTCAGTGTcc.......
EV565941       <-- TGTTTTTTT-GATAAATGTTCAGTGTGTTTcc...
EX770290       <-- TGTTTTTTT-GATAAATGTTCAGTGTGTTTcc...
EW714792       <-- TGTTTTTTTTGATAAATGTTCA-TGTGTTT.....
EY924478       <-- TGTTTTTTTTGATAAATGTTCAGTcc.........
EV569149       <-- TGTTTTTTT-GATAAATGTTCAGTGTGTTTATCC.
EY933073       <-- TGTTTTTTT-GATAAATGTTCAGTGTGTTTATCCC
EV538353       <-- TGTTTTTTTTGATAAATGTTCAGTGTGTTTATCC.
FD948102       <-- TGTTTTTTT-GATAAATGTTCAGTGTGTTTATC..
EW728703       --> TGTTTTTTT-GATAAATGTTCAGTGTGTTTATCC.
FD960192       --> TGTTTTTTT-GATAAATGTTCAGTGTcc.......
EV573740       --> TGTTTTTTT-GATAAATGTTCAGTGTGTTTATCC.
EY928645       --> TGTTTTTTT-GATAAATGTTCAGTGTGTTTATCCC
EW718943       --> TGTTTTTTTTGATAAATGTTCAGTGTGTTTc....
FD943937       --> TGTTTTTTT-GATAAATGTTCAGTGTGTTTATC..