RadishBase

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Alignment for radish unigene UN19948

               -6     -     44
UN19948        --> .......GCATTAAGAAGTAAATATAATAAACATGAAGCATTTAAGCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- .....gcGCATTAAGAAGTAAATATAATAAACATGAAGCATTTAAGCCTT
FD948855       <-- ..................................................
EV538782       <-- ..................................................
EY941273       <-- ..................................................
FY441641       <-- ..................................................
FY438548       <-- ..................................................
EV538549       <-- ..................................................
FY446505       <-- ..................................................
EV542531       --> actcttaGCATTAAGAAGTAAATATAATAAACATGAAGCATTTAAGCCTT
FD977121       --> .....gcGCATTAAGAAGTAAATATAATAAACATGAAGCATTTAAGCCTT
FD568089       --> .........................AATAAACATGAAGCATTTAAGCCTT
EY893502       --> ..................................................
EV542717       --> ..................................................
EV530109       --> ..................................................
EV531935       --> ..................................................
EX769587       --> ..................................................
FD538587       --> ..................................................
FD944583       --> ..................................................

               44     -     94
UN19948        --> TGTAGTTTATACAGAACAAAATCTATCAAAGGATTTGGCTAAAGATCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- TGTAGTTTATACAGAACAAAATCTATCAAAGGATTTGGCTAAAGATCTGA
FD948855       <-- ..................................................
EV538782       <-- ..................................................
EY941273       <-- ..................................................
FY441641       <-- ..................................................
FY438548       <-- ..................................................
EV538549       <-- ..................................................
FY446505       <-- ..................................................
EV542531       --> TGTAGTTTATACAGAACAAAATCTATCAAATGATTTGGCTAAAGATCTGA
FD977121       --> TGTAGTTTATACAGAACAAAATCTATCAAAGGATTTGGCTAAAGATCTGA
FD568089       --> TGTAGTTTATACAGAACAAAATCTATCAAAGGATTTGGCTAAAGATCTGA
EY893502       --> ................CAAAATCTATCAAAGGATTTGGCTAAAGATCTGA
EV542717       --> ...............................ggTTTGGCTAAAGATCTGA
EV530109       --> ...........................................GATCTGA
EV531935       --> .................................................A
EX769587       --> ..................................................
FD538587       --> ..................................................
FD944583       --> ..................................................

               94     -    144
UN19948        --> ATAAACAGATTCATAACCGAGCAAAATATTTTGAAACAAAGGTTTCACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ATAAACAGATTCATAACCGAGCAAAATATTTTGAAACAAAGGTTTCACAT
FD948855       <-- ............ATAACCGAGCAAAACATTTTGAAACAAAGGTTTCACAT
EV538782       <-- ..................................................
EY941273       <-- ..................................................
FY441641       <-- ..................................................
FY438548       <-- ..................................................
EV538549       <-- ..................................................
FY446505       <-- ..................................................
EV542531       --> ATAAACAGATTCATAACCGAGCAAAACATTTTGACACAAAGGTTTCACAT
FD977121       --> ATAAACAGATTCATAACCGAGCAAAATATTTTGAAACAAAGGTTTCACAT
FD568089       --> ATAAACAGATTCATAACCGAGCAAAATATTTTGAAACAAAGGTTTCACAT
EY893502       --> ATAAACAGATTCATAACCGAGCAAAATATTTTGAAACAAAGGTTTCACAT
EV542717       --> ATAAACAGATTCATAACCGAGCAAACCATTTTGACACAAAGGTTTCACAT
EV530109       --> ATAAACAGATTCATAACCGAGCAAAATATTTTGAAACAA-GGTTTCACAT
EV531935       --> ATAAACAGATTCATAACCGAGCAAAATATTTTGAAACAAAGGTTTCACAT
EX769587       --> ..................................................
FD538587       --> ..................................................
FD944583       --> ..................................................

               144    -    194
UN19948        --> AACCAGAGACGATAACTAAACATCTGGTTTATTTTTCTAAATCAAAGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- AACCAGAGACGATAACTAAAAATCTGGTTTATTTTTCTAAATCAAAGGAA
FD948855       <-- AACCAGAGACGATAATTAAACATCTGGTTTATTTTTCTAAATCAAAGGAA
EV538782       <-- ....................................CTAAATCAAAGGAA
EY941273       <-- ..................................................
FY441641       <-- ..................................................
FY438548       <-- ..................................................
EV538549       <-- ..................................................
FY446505       <-- ..................................................
EV542531       --> AACCAGAGACGATAACTAAACATCTGGTTTATTTTTCTAAATCAAAGGAA
FD977121       --> AACCAGAGACGATAACTAAAAATCTGGTTTATTTTTCTAAATCAAAGGAA
FD568089       --> AACCAGAGACGATAACTAAACATCTGGTTTATTTCTCTAAATCAAAGGAA
EY893502       --> AACCAGAAACGATAACTAAACATCTGGTTTATTTTTCTAAATCAAAGGAA
EV542717       --> AACCAGAGACGATAACTAAACATCTGGTTTATTTTTCTAAATCAAAGGAA
EV530109       --> AACCAGAGACGATAACTAAACATCTGGTTTATTTTTCTAAATCAAAGGAA
EV531935       --> AACCAGAGACGATAACTAAACATCTGGTTTATTTTTCTAAATCAAAGGAA
EX769587       --> ...............................TTTTTCTAAATCAAAGGAA
FD538587       --> ...............................TTTTTCTAAATCAAAGGAA
FD944583       --> ...............................TTTTTCTAAATCAAAGGAA

               194    -    244
UN19948        --> ACGCCAATGGCTAAGGATAATACATCAGGGAATAAGTTATTCAAGGCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ACGCCAATGGCTAAGGATAATACATCAGGGAATAAGTTATTCAAGGCTCG
FD948855       <-- ACGCCAATGGCTAAGGATAATACATCAGGGAATAAGTTATTCAAGACTCA
EV538782       <-- ACGCCAATGGCTAAGGATAATACATCAGGGAATAAGTTATTCAAGGCTCG
EY941273       <-- ..................................................
FY441641       <-- ..................................................
FY438548       <-- ..................................................
EV538549       <-- ..................................................
FY446505       <-- ..................................................
EV542531       --> ACGCCAATGGCTAAGGATAATACATCAGGGAATAAGTTATTCAAGGCTCG
FD977121       --> ACGCCAATGGCTAAGGATAATACATCAGGGAATAAGTTATTCAAGGCTCG
FD568089       --> ACGCCAATGGCTAAGGATAATACATCAGGGAATAAGTTATTCAAGGCTCG
EY893502       --> ACGCCAATGGCTAAGGATAATACATCAGGGAATAAGTTATTCAAGGCTCG
EV542717       --> ACGCCAATGGCTAAGGATAATACATCAGGGAATAAGTTATTCAAGGCTCG
EV530109       --> ACGCCAATGGCTAAGGATAATACATCAGGGAATAAGTTATTCAAGGCTCG
EV531935       --> ACGCCAATGGCTAAGGATAATACATCAGGGAATAAGTTATTCAAGGCTCG
EX769587       --> ACGCCAATGGCTAAGGATAATACATCAGGGAATAAGTTATTCAAGGCTCG
FD538587       --> ACGCCAATGGCTAAGGATAATACATCAGGGAATAAGTTATTCAAGGCTCG
FD944583       --> ACCCCAATGGCTAAGGATAATACATCAGGGAATAAGTTATTCAAGACTCA

               244    -    294
UN19948        --> ATCTTGATGCCGTTTTGGCTTGATTCTTGTGATGTCGAAGGAGGAGGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ATCTTGATGCCGTTTTGGCTTGATTCTTGTGATGTCGAAGGAGGAGGAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948855       <-- ATCTTGATGCCGTTTTGGCTTGATTCTTGTGATGTCGAAGGAGGAGGAGG  Raphanus sativus cv Early Scarlet Globe
EV538782       <-- ATCTTGATGCCGTTTTGGCTTGATTCTTGTGATGTCGAAGGAGGAGGAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY941273       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY441641       <-- ..................................................  Raphanus sativus cv GSK3-1
FY438548       <-- ..................................................  Raphanus sativus cv GSK3-1
EV538549       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY446505       <-- ..................................................  Raphanus sativus cv GSK3-1
EV542531       --> ATCTTGATGCCGTTTTGGCTTGATTCTTGTGATGTCGAAGGAGGAGGAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977121       --> ATCTTGATGCCGTTTTGGCTTGATTCTTGTGATGTCGAAGGAGGAGGAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568089       --> ATCT-GATGCCGTTTTGGCTTGATTCCTGTGATGTCGAAGGAGAAGGAGG  Raphanus sativus var. oleiformis
EY893502       --> ATCTTGACGCCGTTTTGGCTTGATTCTTGTGATGTCG.............  Raphanus raphanistrum subsp. maritimus
EV542717       --> ATCTTGATGCCGTTTTGGCTTGATTCTTGTGATGTCGAAGGAGGAGGAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530109       --> ATCTTGATGCCGTTTTGGCTTGATTCTTGTGATGTCGAAGGAGAAGGAGG  Raphanus raphanistrum subsp. maritimus
EV531935       --> ATCTTGATGCCGTTTTGGCTTGATTCTTGTGATGTCGAAGGAGAAGGAGG  Raphanus raphanistrum subsp. maritimus
EX769587       --> ATCTTGATGCCGTTTTGGCTTGATTCTTGTGATGTCGAAGGGGAAGGAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538587       --> ATCTTGATGCCGTTTTGGCTTGATTCTTGTGATGTCCAAGGAGGAGGAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944583       --> ATCTTGATGCCGTTTTGGCTTGATTCTTGTGATGTCAAAGGAGGAGGAGG  Raphanus sativus cv Early Scarlet Globe

               294    -    344
UN19948        --> AGGAGGA---AGATGACCTTTCTCTTGCAAGCTCTTGACAGTGTCGTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- AGGAGGAGGAAGATGACCTTTCTCTTGCAAGCTCTTGACAGTGTCGTAAA
FD948855       <-- AGGAGGA---AGATGACCTTTCTCTTGCAAGCTCTTGACAGTGTCGTAGA
EV538782       <-- AGGAGGAGGAAGATGACCTTTCTCTTGCAAGCTCTTGACAGTGTCGTAGA
EY941273       <-- ......................................CAGTGTCGTAGA
FY441641       <-- ..................................................
FY438548       <-- ..................................................
EV538549       <-- ..................................................
FY446505       <-- ..................................................
EV542531       --> AGGAGGAGGAAAATGACCTTTCTCTTGCAAGCTCTTGACAGTGTCGTAAA
FD977121       --> AGGAGGAGGAAGATGACCTTTCTCTTGCAAGCTCTTGACAGTGTCGTAAA
FD568089       --> AGGAGGA---AGATGACCTTTCTCTTGCAGGCTCTTGACAGTGTCGTAAA
EY893502       --> ..................................................
EV542717       --> AGGAGGAGGAAGATGACCTTTCTCTTGCAAGCTCTTGACAGTGTCGTAAA
EV530109       --> AGGAGGA---AGATGACCTTTCTCTTGCAAGCTCTTGACAGTGTCGTAAA
EV531935       --> AGGAGGA---AGATGACCTTTCTCTTGCAAGCTCTTGACAGTGTCGTAAA
EX769587       --> AGGAGGA---AGATGACCTTTCTCTTGCAAGCTCTTGACAGTGTCGTAAA
FD538587       --> AGGAGGA---AAATGACCTTTCTCTTGCAAGCTCTTGACAGTGTCGTAAA
FD944583       --> AGGAGGA---AAATGACCTTTCTCTTGCAAGCTCTTGACAGTGTCGTAAA

               344    -    394
UN19948        --> GGCTTTGCTTGGTGGACGTGAACTCTAAGCCTAAGTCCTTTATCTTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- GGCTTTGCTTGGTGGACGTGAACTCTAAGCCTAAGTCCTTTATCTTTTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948855       <-- GGCTTTGCTTGGTGGACGTGAACTCTAAGCCTAAGTCCTTTATCTTTTGG  Raphanus sativus cv Early Scarlet Globe
EV538782       <-- GGCTTTGCTTGGTGGACGTGAACGCTAAGCCTAAGTCCTTTATCTTTTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY941273       <-- GGCTTTGCTTGGTGGACGTGAACTCTAAGCCTAAGTCCTTTATCTTTTGG  Raphanus sativus cv Early Scarlet Globe
FY441641       <-- ..................................................  Raphanus sativus cv GSK3-1
FY438548       <-- ..................................................  Raphanus sativus cv GSK3-1
EV538549       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY446505       <-- ..................................................  Raphanus sativus cv GSK3-1
EV542531       --> GGCTTTGCTTGGTGGACGTGAACGCTAAGCCTAAGTCCTTTATCTTTTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977121       --> GGCTTTGCTTGGTGGACGTGAACTCTAAGCCTAAGTCCTTTATCTTTTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568089       --> GGCTTTGCTTGGTGGACGTGAACTCTAAGCCTAAGTCCTTTATCTTTTGG  Raphanus sativus var. oleiformis
EY893502       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV542717       --> GGCTTTGCTTGGTGGACGTGAACGCTAAGCCTAAGTCCTTTATCTTTTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530109       --> GGCTTTGCTTGGTGGACGTGAACTCTAAGCCTAAGTCCTTTATCTTTTGG  Raphanus raphanistrum subsp. maritimus
EV531935       --> GGCTTTGCTTGGTGGACGTGAACTCTAAGCCTAAGTCCTTTATCTTTTGG  Raphanus raphanistrum subsp. maritimus
EX769587       --> GGCTTTGCTTGGTGGACGTGAACTCTAAGCCTAAGTCCTTTATCTTTTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538587       --> GGCTTTGCTTGGTGGACGTGAACGCTAAGCCTAAGTCCTTTATCTTTTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944583       --> GGCTTTGCTTGGTGGACGTGAACTCTAAGCCTAAGTCCTTTATCTTTTGG  Raphanus sativus cv Early Scarlet Globe

               394    -    444
UN19948        --> TTAGTGAACTTGTACGGCTTGGCTCTTGGGTTCTTCTCGTCCTTGCACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- TTAGTGAACTTGTACAGCTTGGCTCTTGGGTTCTTCTCGTCCTTGCACTT
FD948855       <-- TTAGTGAACTTGTACGGCTTGGCTCTTGGGTTCTTCTCGTCCTTGCACTT
EV538782       <-- TTAGTGAACTTGTACGGCTTGGCTCTTGGGTTCTTCTCGTCCTTGCACTT
EY941273       <-- TTAGTGAACTTGTACGGCTTGGCTCTTGGGTTCTTCTCGTCCTTGCACTT
FY441641       <-- ..................................................
FY438548       <-- ..................................................
EV538549       <-- ..................................................
FY446505       <-- ..................................................
EV542531       --> TTAGTGAACTTGTACGGCTTGGCTCTTGGGTTCTTCTCGTCCTTGCACTT
FD977121       --> TTAGTGAACTTGTACAGCTTGGCTCTTGGGTTCTTCTCGTCCTTGCACTT
FD568089       --> TTAGTGAACTTGTACGGCTTGGCTCTTGGGTTCTTCTCGTCCTTGCACTT
EY893502       --> ..................................................
EV542717       --> TTAGTGAACTTGTACGGCTTGGCTCTTGGGTTCTTCTCGTCCTTGCACTT
EV530109       --> TTAGTGAACTTGTACGGCTTGGCTCTTGGGTTCTTCTCGTCCTTGCACTT
EV531935       --> TTAGTGAACTTGTACGGCTTGGCTCTTGGGTTCTTCTCGTCCTTGCACTT
EX769587       --> TTAGTGAACTTGTACGGCTTGGCTCTTGGGTTCTTCTCGTCCTTGCACTT
FD538587       --> TTAGTGAACTTGTACGGCTTGGCTCTTGGGTTCTTCTCGTCCTTGCACTT
FD944583       --> TTAGTGAACTTGTACGGCTTGGCTCTTGGGTTCTTCTCGTCCTTGCACTT

               444    -    494
UN19948        --> GGTTGGAAGTGGGTACTCCGGGAATAACTTAGCCAAAATCTCAACAACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- GGTTc.............................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948855       <-- GGTTGGAAGTGGGTACTCCGGGAATAACTTAGCCAAAATCTCAACAACTT  Raphanus sativus cv Early Scarlet Globe
EV538782       <-- GGTTGGAAGTGGGTACTCCGGGAATAACTTAGCCAAAATCTCAACAACTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY941273       <-- GGTTGGAAGTGGGTACTCCGGGAATAACTTAGCCAAAATCTCAACAACTT  Raphanus sativus cv Early Scarlet Globe
FY441641       <-- .....GAAGTGGGTACTCCGGGAATAACTTAGCCAAAATCTCAACAACTT  Raphanus sativus cv GSK3-1
FY438548       <-- .......AGTGGGTACTCCGGGAATAACTTAGCCAAAATCTCAACAACTT  Raphanus sativus cv GSK3-1
EV538549       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY446505       <-- ..................................................  Raphanus sativus cv GSK3-1
EV542531       --> GGTTGGAAGTGGGTACTCCGGGAATAACTTAGCCAAAATCTCAACAACTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977121       --> GGTTc.............................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568089       --> GGTTGGAAGTGGGTACTCAGGGAATAACTTAGCCAAAATCTCAACAACTT  Raphanus sativus var. oleiformis
EY893502       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV542717       --> GGTTGGAAGTGGGTACTCCGGGAATAACTTAGCCAAAATCTCAACAACTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530109       --> GGTTGGAAGTGGGTACTCAGGGAATAACTTAGCCAAAATCTCAACAACTT  Raphanus raphanistrum subsp. maritimus
EV531935       --> GGTTGGAAGTGGGTACTCAGGGAATAACTTAGCCAAAATCTCAACAACTT  Raphanus raphanistrum subsp. maritimus
EX769587       --> GGTTGGAAGTGGGTACTCAGGGAATAACTTAAACAAAATCTCAACAACTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538587       --> GGT...............................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944583       --> GGTTGGAAGTGGGTACTCCGGGAATAACTTAGCCAAAATCTCAACAACTT  Raphanus sativus cv Early Scarlet Globe

               494    -    544
UN19948        --> CGCCGCGGTGAAGTGCGCTCTCCGCAAGGAGATAACGTCCAGAGGCCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948855       <-- CGCCGCGGTGAAGTGCGCTCTCCGCAAGAAGATAACGTCCAGAGGCCGAG  Raphanus sativus cv Early Scarlet Globe
EV538782       <-- CGCCCCGGTGAAGTGCGCTTTCCGCAAGGAGATAACGTCCAGAGGCTGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY941273       <-- CGCCGCGGTGAAGTGCGCTCTCCGCAAGAAGATAACGTCCAGAGGCCGAG  Raphanus sativus cv Early Scarlet Globe
FY441641       <-- CGCCGCGGTGAAGTGCGCTCTCCGCAAGAAGATAACGTCCAGAGGCCGAG  Raphanus sativus cv GSK3-1
FY438548       <-- CGCCGCGGTGAAGTGCGCTCTCCGCAAGAAGATAACGTCCAGAGGCCGAG  Raphanus sativus cv GSK3-1
EV538549       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY446505       <-- ..................................................  Raphanus sativus cv GSK3-1
EV542531       --> CCCCCCGGTGAAGTGCGCTTTCCGCAAGGAGATAACGTCCAGAGGCTGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977121       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568089       --> CGCCGCGGTGAAGTGCGCTCTCCGCAAGGAGATAACGTCCAGAGGCCGAG  Raphanus sativus var. oleiformis
EY893502       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV542717       --> CGCCCCGGTGAAGTGCGCTTTCCGCAAGGAGATAACGTCCAGAGGCTGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530109       --> CGCCGCGGTGAAGTGCGCTCTCCGCAAGGAGATAACGTCCAGAGGCCGAG  Raphanus raphanistrum subsp. maritimus
EV531935       --> CGCCGCGATGAAGTGCGCTCTCCGCAAGGAGATAACGTCCAGAGGCCGAG  Raphanus raphanistrum subsp. maritimus
EX769587       --> CCCCGCGGTGAAGTGCGCTCTCCGCAAGGAGATAACGTCCAGAGGCCGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538587       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944583       --> CCCCGCGGTGAAGTGCGCTCTCCGCAAGAAGATAACG.............  Raphanus sativus cv Early Scarlet Globe

               544    -    594
UN19948        --> GGTGCCTCGTAGACAAGAACATGAGCTAGTGCGACATCACGAACATCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ..................................................
FD948855       <-- GGTGCCTCGTAGACAAGAACATGAGCTAGTGCGACATCACGAACATCCAC
EV538782       <-- GGTGCCTCGTAGACAAGAACATGAGCTAGTGCGACATCACGAACATCCAC
EY941273       <-- GGTGCCTCGTAGACAAGAACATGAGCTAGTGCGACATCACGAACATCCAC
FY441641       <-- GGTGCCTCGTAGACAAGAACATGAGCTAGTGCGACATCACGAACATCCAC
FY438548       <-- GGTGCCTCGTAGACAAGAACATGAGCTAGTGCGACATCACGAACATCCAC
EV538549       <-- ..................................................
FY446505       <-- ..................................................
EV542531       --> GGTGCCTCGTAAACAAGAACATGAGCTAGTGCGACATCACGAACATCCAC
FD977121       --> ..................................................
FD568089       --> GGTGCCTCGTAGACAAGAACATGAGCTAGTGCGACATCACGAACATCCAC
EY893502       --> ..................................................
EV542717       --> GGTGCCTCGTAGACAAGAACATGAGCTAGTGCGACATCACGAACATCCAC
EV530109       --> GGTGCCTCGTAGACAAGAACATGAGCTAGTGCGACATCACGAACATCCAC
EV531935       --> GGTGCCTCGTAGACAAGAACATGAGCTAGTGCGACATCACGAACATCCAC
EX769587       --> GGTGCCTCGTAAACAAGAACATGAGCTAGTGCGACATCACGAACATCCAC
FD538587       --> ..................................................
FD944583       --> ..................................................

               594    -    644
UN19948        --> ATAAGCCTGAGTCAAATTAGCGTAAGTCTTAGCCGAGCCGGTTAGATACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ..................................................
FD948855       <-- ATAAGCCTGAGTCAAATTAGCGTAAGTCTTAGCCGAGCCGGTTAGATAC.
EV538782       <-- ATAAGCCTGAGTCAAATTAGCGTAAGTCTTAGCCGAGCCGGTTAGATACT
EY941273       <-- ATAAGCCTGAGTCAAATTAGCGTAAGTCTTAGCCGAGCCGGTTAGATACT
FY441641       <-- ATAAGCCTGAGTCAAATTAGCGTAAGTCTTAGCCGAGCCGGTTAGATACT
FY438548       <-- ATAAGCCTGAGTCAAATTAGCGTAAGTCTTAGCCGAGCCGGTTAGATACT
EV538549       <-- ........GAGTCAAATTAGCGTAAGTCTTAGCCGAGCCGGTTAGATACT
FY446505       <-- .............................TAGCCGAGCCGGTTAGATACT
EV542531       --> ATAAGCCTGAGTCAAATTAGCGTAAGTCTTAGCCGAGCCGGTTAGATACT
FD977121       --> ..................................................
FD568089       --> ATAAGCCTGAGTCAAATTAGCGTAAGTCTTAGCCGAGCCGGTTAGATACT
EY893502       --> ..................................................
EV542717       --> ATAAGCCTGAGTCAAATTAGCGTAAGTCTTAGCCGAGCCGGTTAGATACT
EV530109       --> ATAAGCCTGAGTCAAATTAGCGTAAGTCTTAGCCGAGCCGGTTAGATACT
EV531935       --> ATAAGCCTGAGTCAAATTAGCGTAAGTCTTAGCCGAGCCGGTTAGATACT
EX769587       --> ATAAGCCTGAGTCAAATTAGCGTAAGTCTTAGCCGAGCCGGTTAGATACT
FD538587       --> ..................................................
FD944583       --> ..................................................

               644    -    694
UN19948        --> TTAGTACGTGGAAGAGACTGGCGTTGATCGTCGGCTGTAACGGCGGACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ..................................................
FD948855       <-- ..................................................
EV538782       <-- TTAGTACGTGGAAGAGACTGGCGTTGATCGTCGGCTGTAACGGCGGACCA
EY941273       <-- TTAGTACGTGGAAGAGACTGGCGTTGATCGTCGGCTGTAACGGCGGACCA
FY441641       <-- TTAGTACGTGGAAGAGACTGGCGTTGATCGTCGGCTGTAACGGCGGACCA
FY438548       <-- TTAGTACGTGGAAGAGACTGGCGTTGATCGTCGGCTGTAACGGCGGACCA
EV538549       <-- TTAGTACGTGGAAGAGACTGGCGTTGATCGTCGGCTGTAACGGCGGACCA
FY446505       <-- TTAGTACGTGGAAGAGACTGGCGTTGATCGTCGGCTGTAACGGCGGACCA
EV542531       --> TTAGTACGTGGAA.....................................
FD977121       --> ..................................................
FD568089       --> TTAGTACGTGGAAGAGACTGGCGTTGATCGTCGGCTGTAACGGCGGACCA
EY893502       --> ..................................................
EV542717       --> TTAGTACGTGGAAGAGACTGGCGTTGATCGTCGGCTGTAACGGCGGACCA
EV530109       --> TTAGTACGTGGAAGAGACTGGCGTTGATCGTCGGCTGTAACGGCGGACCA
EV531935       --> TTAGTACGTGGAAGAGACTGGCGTTGATCGTCGGCTGTAACGGCGGACCA
EX769587       --> TTAGTACGTGGAAGAGACTGGCGTTGATCGTCGGCTGTAACGGCGGACCA
FD538587       --> ..................................................
FD944583       --> ..................................................

               694    -    744
UN19948        --> AGAACCAGCACCGGATTCAAAACCACCAGGTCAACACCTTTCTCCTCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ..................................................
FD948855       <-- ..................................................
EV538782       <-- AGAACCAGCACCGGATTCAAAACCACCAGGTCAACACCTTTCTCCTCTGC
EY941273       <-- AGAACCAGCACCGGATTCAAAACCACCAGGTCAACACCTTTCTCCTCTGC
FY441641       <-- AGAACCAGCACCGGATTCAAAACCACCAGGTCAACACCTTTCTCCTCTGC
FY438548       <-- AGAACCAGCACCGGATTCAAAACCACCAGGTCAACACCTTTCTCCTCTGC
EV538549       <-- AGAACCAGCACCGGATTCAAAACCACCAGGTCAACACCTTTCTCCTCTGC
FY446505       <-- AGAACCAGCACCGGATTCAAAACCACCAGGTCAACACCTTTCTCCTCTGC
EV542531       --> ..................................................
FD977121       --> ..................................................
FD568089       --> AGAACCAGCACCGGATTCAAAACCACCAGGTCAACACCTTTCTCCTCTGC
EY893502       --> ..................................................
EV542717       --> AGAACCAGCACCGGATTCAAAACCACCAGGTCAACACCTTTCTCCTCTGC
EV530109       --> AGAACCAGCACCGGATTCAAAACCACCAGGTCAACACCTTTCTCCTCTGC
EV531935       --> AGAACCAGCACCGGATTCAAAACCACCAGGTCAACACCTTTCTCCTCTGC
EX769587       --> AGAACCAGCACCGGATTCAAAACCACCAGGTCAACACCTTTCTCCTCTGC
FD538587       --> ..................................................
FD944583       --> ..................................................

               744    -    794
UN19948        --> CGTCTCCCACGCCGCTTGCTCCGCCACCATCTTGCCGTAACAATACCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ..................................................
FD948855       <-- ..................................................
EV538782       <-- CGTCTCCCACGCGGCTTGCTCCGCCACCATCTTGCCGTAACAATACCAAT
EY941273       <-- CGTCTCCCACGCCGCTTGCTCCGCCACCATCTTGCCGTAACAATACCAAT
FY441641       <-- CGTCTCCCACGCCGCTTGCTCCGCCACCATCTTGCCGTAACAATACCAAT
FY438548       <-- CGTCTCCCACGCCGCTTGCTCCGCCACCATCTTGCCGTAACAATACCAAT
EV538549       <-- CGTCTCCCACGCGGCTTGCTCCGCCACCATCTTGCCGTAACAATACCAAT
FY446505       <-- CGTCTCCCACGCCGCTTGCTCCGCCACCATCTTGCCGTAACAATACCAAT
EV542531       --> ..................................................
FD977121       --> ..................................................
FD568089       --> CGTCTCCCACGCCGCTTGCTCCGCCACCATCTTGCCGTAACAATACCCAT
EY893502       --> ..................................................
EV542717       --> CGTCTCCCACGCGGCTTGCTCCGCCACCATCTTGCCGTAACAATACCAAT
EV530109       --> CGTCTCCCACGCCGCTTGCTCCGCCACCATCTTGCCGTAACAATACCAAT
EV531935       --> CGTCTCCCACGCCGCTTGCTCCGCCACCATCTTGACGTAACAATACCAAT
EX769587       --> CGTCTCCCACGCCGCTTGCTCCGCCACCATCTTGCCGTA-C-ATACCAAT
FD538587       --> ..................................................
FD944583       --> ..................................................

               794    -    844
UN19948        --> TCTTAGTGTTTTTGCAGAACTCAAGATCACTCCAACAACTTTCGTCAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ..................................................
FD948855       <-- ..................................................
EV538782       <-- TCTTAGTGTTTTTGCAGAACTCAAGATCACTCCAACAACTTTCGTCAACc
EY941273       <-- TCTTAGTGTTTTTGCAGAACTCAAGATCACTCCAACAACTc.........
FY441641       <-- TCTTAGTGTTTTTGCAGAACTCAAGATCACTCCAACAACTTTCGTCAACA
FY438548       <-- TCTTAGTGTTTTTGCAGAACTCAAGATCACTCCAACAACTTTCGTCAACA
EV538549       <-- TCTTAGTGTTTTTGCAGAACTCAAGATCACTCCAACAACTTTCATCAACA
FY446505       <-- TCTTAGTGTTTTTGCAGAACTCAAGATCACTCCAACAACTTTCGTCAACA
EV542531       --> ..................................................
FD977121       --> ..................................................
FD568089       --> TCTTAGT...........................................
EY893502       --> ..................................................
EV542717       --> TCTTAGTGTTTTTGCAGAACTCAAGAT.......................
EV530109       --> TCTTAGTGTTTTTGCAGAACTCAAGATCACTCCAACAACTTTCGTCAACA
EV531935       --> TCTTAGTGTTTTTGCAGAACTCAAGATCACTCCAACAACTTTCGTCAA..
EX769587       --> TCTTAGTGTTTT-GCAGAACTCAAGATCACTCCA................
FD538587       --> ..................................................
FD944583       --> ..................................................

               844    -    894
UN19948        --> ACGGCTTCAGGGTCACGGTTCGGGTCCATGTAGACCGCACCAATTGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ..................................................
FD948855       <-- ..................................................
EV538782       <-- c.................................................
EY941273       <-- ..................................................
FY441641       <-- ACGGCTTCAGGGTCACGGTTCGGGTCCATGTAGACCGCACCAATTGAGGA
FY438548       <-- ACGGCTTCAGGGTCACGGTTCGGGTCCATGTAGACCGCACCAATTGAGGA
EV538549       <-- ACGGCTTCAGGGTCACGCTTCGGGTCCATGTAGACCGTACCAATTGAGGA
FY446505       <-- ACGGCTTCAGGGTCACGGTTCGGGTCCATGTAGACCGCACCAATTGAGGA
EV542531       --> ..................................................
FD977121       --> ..................................................
FD568089       --> ..................................................
EY893502       --> ..................................................
EV542717       --> ..................................................
EV530109       --> ACGGCT............................................
EV531935       --> ..................................................
EX769587       --> ..................................................
FD538587       --> ..................................................
FD944583       --> ..................................................

               894    -    944
UN19948        --> GGTGATGACCACGCGCTTCACCTTGGTTTCAGCTGCAGCATTAATTACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ..................................................
FD948855       <-- ..................................................
EV538782       <-- ..................................................
EY941273       <-- ..................................................
FY441641       <-- GGTGATGACCACGCGCTTCACCTTGGTTTCAGCTGCAGCATTAATTACGA
FY438548       <-- GGTGATGACCACGCGCTTCACCTTGGTTTCAGCTGCAGCATTAATTACGA
EV538549       <-- GGTGATTACCACGCGCTTCACCTTGGTTTCAGCTGCAGCATTAATTACGA
FY446505       <-- GGTGATGACCACGCGCTTCACCTTGGTTTCAGCTGCAGCATTAATTACGA
EV542531       --> ..................................................
FD977121       --> ..................................................
FD568089       --> ..................................................
EY893502       --> ..................................................
EV542717       --> ..................................................
EV530109       --> ..................................................
EV531935       --> ..................................................
EX769587       --> ..................................................
FD538587       --> ..................................................
FD944583       --> ..................................................

               944    -    994
UN19948        --> ACTTGGCTCCGTTCACGGCCGGCTCCACCATTTCTTCGGGATCGTCAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ..................................................
FD948855       <-- ..................................................
EV538782       <-- ..................................................
EY941273       <-- ..................................................
FY441641       <-- ACTTGGCTCCGTTCACGGCCGGCTCCACCATTTCTTCGGGATCGTCAGTG
FY438548       <-- ACTTGGCTCCGTTCACGGCCGGCTCCACCATTTCTTCGGGATCGTCAGTG
EV538549       <-- ACTTGGCTCCGTTCACTGCCGGCTCCACCATTTGTTCGGGATCGTCAGTG
FY446505       <-- ACTTGGCTCCGTTCACGGCCGGCTCCACCATTTCTTCGGGATCGTCAGTG
EV542531       --> ..................................................
FD977121       --> ..................................................
FD568089       --> ..................................................
EY893502       --> ..................................................
EV542717       --> ..................................................
EV530109       --> ..................................................
EV531935       --> ..................................................
EX769587       --> ..................................................
FD538587       --> ..................................................
FD944583       --> ..................................................

               994    -   1044
UN19948        --> ACCGGAGAAGCCGTGTGAAAGACGCCATCGCAACCATCGATAGCCTCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ..................................................
FD948855       <-- ..................................................
EV538782       <-- ..................................................
EY941273       <-- ..................................................
FY441641       <-- ACCGGAGAAGCCGTGTGAAAGACGCCATCGCAACCATCGATAGCCTCCTT
FY438548       <-- ACCGGAGAAGCCGTGTGAAAGACGCCATCGCAACCATCGATAGCCTCCTT
EV538549       <-- ACCGGAGAAGCCGTGTGAAAGACGCCATCGCAACCATCGATAGCCTCCTT
FY446505       <-- ACCGGAGAAGCCGTGTGAAAGACGCCATCGCAACCATCGATAGCCTCCTT
EV542531       --> ..................................................
FD977121       --> ..................................................
FD568089       --> ..................................................
EY893502       --> ..................................................
EV542717       --> ..................................................
EV530109       --> ..................................................
EV531935       --> ..................................................
EX769587       --> ..................................................
FD538587       --> ..................................................
FD944583       --> ..................................................

               1044   -   1094
UN19948        --> AAGAGCATCATAGTCCTGGAGATCTGCTTTGCACAGAATCAGTCTCTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ..................................................
FD948855       <-- ..................................................
EV538782       <-- ..................................................
EY941273       <-- ..................................................
FY441641       <-- AAGAGCATCATAGTCCTGGAGATCTGCTTTGCACAGAATCAGTCTCTCCT
FY438548       <-- AAGAGCATCATAGTCCTGGAGATCTGCTTTGCACAGAATCAGTCTCTCCT
EV538549       <-- AAGAGCATCATAGTCCTGGAGATCTGCTTTGCACAGAATCAGTCTCTCCT
FY446505       <-- AAGAGCATCATAGTCCTGGAGATCTGCTTTGCACAGAATCAGTCTCTCCT
EV542531       --> ..................................................
FD977121       --> ..................................................
FD568089       --> ..................................................
EY893502       --> ..................................................
EV542717       --> ..................................................
EV530109       --> ..................................................
EV531935       --> ..................................................
EX769587       --> ..................................................
FD538587       --> ..................................................
FD944583       --> ..................................................

               1094   -   1144
UN19948        --> TGGCCCCTTCTAGTTCTCTCAAATGTGTGTTCTTCGGATCATCTGGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ..................................................
FD948855       <-- ..................................................
EV538782       <-- ..................................................
EY941273       <-- ..................................................
FY441641       <-- TGGCCCCTTCTAGTTCTCTCAAATGTGTGTTCTTCGGATCATCTGGATTC
FY438548       <-- TGGCCCCTTCTAGTTCTCTCAAATGTGTGTTCTTCGGATCATCTGGATTC
EV538549       <-- TGGCACCCTCTAGTTCTCTCAAATGTGTATTCTTTGGATCATCTGGATTC
FY446505       <-- TGGCCCCTTCTAGTTCTCTCAAATGTGTGTTCTTCGGATCATCTGGATTC
EV542531       --> ..................................................
FD977121       --> ..................................................
FD568089       --> ..................................................
EY893502       --> ..................................................
EV542717       --> ..................................................
EV530109       --> ..................................................
EV531935       --> ..................................................
EX769587       --> ..................................................
FD538587       --> ..................................................
FD944583       --> ..................................................

               1144   -   1194
UN19948        --> CGTACGGTTCCTTTGACCGTGTAGCCTCTCTCAAGGAGTAACTTAATAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ..................................................
FD948855       <-- ..................................................
EV538782       <-- ..................................................
EY941273       <-- ..................................................
FY441641       <-- CGTACGGTTCCTTTGACCGTGTAGCCTCTCTCAAGGAGTAACTTAATAAT
FY438548       <-- CGTACGGTTCCTTTGACCGTGTAGCCTCTCTCAAGGAGTAACTTAATAAT
EV538549       <-- CGTACGGTTCCTTTGACCGTGTAGCCTCTCTCAAGTAGTAACTTAACAAT
FY446505       <-- CGTACGGTTCCTTTGACCGTGTAGCCTCTCTCAAGGAGTAACTTAATAAT
EV542531       --> ..................................................
FD977121       --> ..................................................
FD568089       --> ..................................................
EY893502       --> ..................................................
EV542717       --> ..................................................
EV530109       --> ..................................................
EV531935       --> ..................................................
EX769587       --> ..................................................
FD538587       --> ..................................................
FD944583       --> ..................................................

               1194   -   1244
UN19948        --> CCAAGAAGCGATGTATCCACCAGCACCAGTGACGCAGACTGTTTTCCCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ..................................................
FD948855       <-- ..................................................
EV538782       <-- ..................................................
EY941273       <-- ..................................................
FY441641       <-- CCAAGAAGCGATGTATCCACCAGCACCAGTGACGCAGACTGTTTTCCCGG
FY438548       <-- CCAAGAAGCGATGTATCCACCAGCACCAGTGACGCAGACTGTTTTCCCGG
EV538549       <-- CCAAGAAGCGATGTATCCACCAGCTCCAGTGACACAGACTGTTTTCCCTG
FY446505       <-- CCAAGAAGCGATGTATCCACCAGCACCAGTGACGCAGACTGTTTTCCCGG
EV542531       --> ..................................................
FD977121       --> ..................................................
FD568089       --> ..................................................
EY893502       --> ..................................................
EV542717       --> ..................................................
EV530109       --> ..................................................
EV531935       --> ..................................................
EX769587       --> ..................................................
FD538587       --> ..................................................
FD944583       --> ..................................................

               1244   -   1294
UN19948        --> GCGTAATTAAAGATTCGTCAACTGGCATCGTTTCCGGCAGTAGAAAACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ..................................................
FD948855       <-- ..................................................
EV538782       <-- ..................................................
EY941273       <-- ..................................................
FY441641       <-- GCGTAATTAAAGATTCGTCAACTGGCATC.....................
FY438548       <-- GCGTAAT-AAAGATTCGTCAAC............................
EV538549       <-- GC---GTTAAAGATTCGTCGACTGGCATCGTTTCCGGCAGTcc.......
FY446505       <-- GCGTAATTAAAGATTCGTCAACTGGCATCGTTTCCGGCAGTAGAAAACAA
EV542531       --> ..................................................
FD977121       --> ..................................................
FD568089       --> ..................................................
EY893502       --> ..................................................
EV542717       --> ..................................................
EV530109       --> ..................................................
EV531935       --> ..................................................
EX769587       --> ..................................................
FD538587       --> ..................................................
FD944583       --> ..................................................

               1294   -   1344
UN19948        --> AAGCTTCGGTCTTGAAGAGACAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~
FD981343       <-- ........................
FD948855       <-- ........................
EV538782       <-- ........................
EY941273       <-- ........................
FY441641       <-- ........................
FY438548       <-- ........................
EV538549       <-- ........................
FY446505       <-- AAGCTTCGGTCTTGAAGAGACAGA
EV542531       --> ........................
FD977121       --> ........................
FD568089       --> ........................
EY893502       --> ........................
EV542717       --> ........................
EV530109       --> ........................
EV531935       --> ........................
EX769587       --> ........................
FD538587       --> ........................
FD944583       --> ........................