Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN19952

               0      -     50
UN19952        --> .GGGGACGTTTGTATCCGGAAGAAGAAGTAAAGAAAAAAGA--TCGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967767       <-- .GGGGACGTTTGTATCCTCAAGAAGAAGTAAAGAAAAAAGA--TCGAAAG
EV540683       <-- .................GGAAGAAGAAGTAAAGAAAAAAGA--TCGAAAG
EX760536       <-- .................GGAAGAAGAAGTAAAGAAAAAAGA--TCGAAAG
EX760563       <-- ...........................................TCGAAAG
FD960665       <-- ..................................................
FD566198       <-- ..................................................
EV571458       <-- ..................................................
FD971720       --> .GGGGACGTTTGTATCCTCAAGAAGAAGTAAAGAAAAAAGA--TCGAAAG
EY905887       --> ggatGACGTTTGTATCCTCAAGAAGAAGTAAAGAAAAAAGA--TCGAAAG
EV536171       --> .................GGAAGAAGAAGTAAAGAAAAAAGA--TCGAAAG
EX756806       --> .................GGAAGAAGAAGTAAAGAAAAAAGA--TCGAAAG
FD562250       --> ..............ggaaGAAGAAGAGGTAAAAAAAAAAAAAGTCGAAAG
FD562459       --> .............ggcctcAAGAAGAAGTAAAAAAAAAAAAAGTCGAAAG
EX756837       --> ...........................................TCGAAAG
FD543548       --> ..................................................
FD964743       --> ..................................................
FD966125       --> ..................................................
EY938862       --> ..................................................
EV566291       --> ..................................................
FD963834       --> ..................................................

               50     -    100
UN19952        --> ATCTGAGAGAG--AGGAAGGCAAAG-GAAGATGGGAATAAGGTTCATATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967767       <-- ATCTGAGAGAG--AGGAAGGCAAAG-GAAGATGGGAATAAGGTTCATATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540683       <-- ATCTGAGAGAG--AGGAAGGTAAAG-GAAGATGGGAATAAGGTTCATATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760536       <-- ATCTGAGAGAG--AGGAAGGCAAAG-GAAGATGGGAATAAGGTTCATATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760563       <-- ATCTGAGAGAG--AGGAAGGCAAAG-GAAGATGGGAATAAGGTTCATATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960665       <-- ................gggaggaagaGAAGATGGGAATAAGGTTCATATT  Raphanus raphanistrum subsp. maritimus
FD566198       <-- ..................................................  Raphanus sativus var. oleiformis
EV571458       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD971720       --> ATCTGAGAGAG--AGGAAGGCAAAG-GAAGATGGGAATAAGGTTCATATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905887       --> ATCTGAGAGAG--AGGAAGGCAAAG-GAAGATGGGAATAAGGTTCATATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536171       --> ATCTGAGAGAG--AGGAAGGTAAAG-GAAGATGGGAATAAGGTTCATATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756806       --> ATCTGAGAGAG--AGGAAGGCAAAG-GAAGATGGGAATAAGGTTCATATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD562250       --> ATCTGAGAGAGGAACGCTGAGGAAGAGAAGATGGGAATAAGGTTCATATT  Raphanus sativus var. oleiformis
FD562459       --> ATCTGAGAGAGGAACGCTGAGGAAGAGAAGATGGGAATAAGGTTCATATT  Raphanus sativus var. oleiformis
EX756837       --> ATCTGAGAGAG--AGGAAGGCAAAG-GAAGATGGGAATAAGGTTCATATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543548       --> ...............ggAGGCAAAG-GAAGATGGGAATAAGGTTCATATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964743       --> ................gggaggaagaGAAGATGGGAATAAGGTTCATATT  Raphanus raphanistrum subsp. maritimus
FD966125       --> ..gggagagaggaacgctgaggaagaGAAGATGGGAATAAGGTTCATATT  Raphanus raphanistrum subsp. maritimus
EY938862       --> .............................gggGGGAATAAGGTTCATATT  Raphanus sativus cv Early Scarlet Globe
EV566291       --> ..................................................  Raphanus raphanistrum subsp. landra
FD963834       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               100    -    150
UN19952        --> AATGGTGAACAAGCAAGGCCAGACTCGCCTTGCTCAGTACTACGAATGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967767       <-- AATGGTGAACAAGCAAGGCCAGACTCGCCTTGCTCAGTACTACGAATGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540683       <-- AATGGTGAACAAGCAAGGCCAGACTCGCCTTGCTCAGTACTACGAATGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760536       <-- AATGGTGAACAAGCAAGGCCAGACTCGCCTTGCTCAGTACTACGAATGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760563       <-- AATGGTGAACAAGCAAGGCCAGACTCGCCTTGCTCAGTACTACGAATGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960665       <-- GATGGTGAACAAGCAAGGGCAGACTCGCCTTGCTCAGTACTACGAATGGC  Raphanus raphanistrum subsp. maritimus
FD566198       <-- ..................................................  Raphanus sativus var. oleiformis
EV571458       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD971720       --> AATGGTGAACAAGCAAGGCCAGACTCGCCTTGCTCAGTACTACGAATGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905887       --> AATGGTGAACAAGCAAGGCCAGACTCGCCTTGCTCAGTACTACGAATGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536171       --> AATGGTGAACAAGCAAGGCCAGACTCGCCTTGCTCAGTACTACGAATGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756806       --> AATGGTGAACAAGCAAGGCCAGACTCGCCTTGCTCAGTACTACGAATGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD562250       --> GATGGTGAACAAGCAAGGGCAGACTCGCCTTGCTCAGTACTACGAATGGC  Raphanus sativus var. oleiformis
FD562459       --> GATGGTGAACAAGCAAGGGCAGACTCGCCTTGCTCAGTACTACGAATGGC  Raphanus sativus var. oleiformis
EX756837       --> AATGGTGAACAAGCAAGGCCAGACTCGCCTTGCTCAGTACTACGAATGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543548       --> AATGGTGAACAAGCAAGGCCAGACTCGCCTTGCTCAGTACTACGAATGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964743       --> GATGGTGAACAAGCAAGGGCAGACTCGCCTTGCTCAGTACTACGAATGGC  Raphanus raphanistrum subsp. maritimus
FD966125       --> GATGGTGAACAAGCAAGGGCAGACTCGCCTTGCTCAGTACTACGAATGGC  Raphanus raphanistrum subsp. maritimus
EY938862       --> GATGGTGAACAAGCAAGGGCAGACTCGCCTTGCTCAGTACTACGAATGGC  Raphanus sativus cv Early Scarlet Globe
EV566291       --> ..................................................  Raphanus raphanistrum subsp. landra
FD963834       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               150    -    200
UN19952        --> TCACCCTCGAGGAACGTCGTGCTCTCGAAGGCGAGATCGTTCGTAAATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967767       <-- TCACCCTCGAGGAACGTCGTGCTCTCGAAGGCGAGATCGTTCGTAAATGC
EV540683       <-- TCACCCTCGAGGAACGTCGTGCTCTCGAAGGCGAGATCGTTCGTAAATGC
EX760536       <-- TCACCCTCGAGGAACGTCGTGCTCTCGAAGGCGAGATCGTTCGTAAATGC
EX760563       <-- TCACCCTCGAGGAACGTCGTGCTCTCGAAGGCGAGATCGTTCGTAAATGC
FD960665       <-- TCACCCTCGAGGAACGTCGTGCTCTCGAAGGCGAGATCGTTCGTAAATGC
FD566198       <-- ..................................................
EV571458       <-- ..................................................
FD971720       --> TCACCCTCGAGGAACGTCGTGCTCTCGAAGGCGAGATCGTTCGTAAATGC
EY905887       --> TCACCCTCGAGGAACGTCGTGCTCTCGAAGGCGAGATCGTTCGTAAATGC
EV536171       --> TCACCCTCGAGGAACGTCGTGCTCTCGAAGGCGAGATCGTTCGTAAATGC
EX756806       --> TCACCCTCGAGGAACGTCGTGCTCTCGAAGGCGAGATCGTTCGTAAATGC
FD562250       --> TCACCCTCGAGGAACGTCGTGCTCTCGAAGGCGAGATCGTTCGTAAATGC
FD562459       --> TCACCCTCGAGGAACGTCGTGCTCTCGAAGGCGAGATCGTTCGTAAATGC
EX756837       --> TCACCCTCGAGGAACGTCGTGCTCTCGAAGGCGAGATCGTTCGTAAATGC
FD543548       --> TCACCCTCGAGGAACGTCGTGCTCTTGAAGGCGAGATCGTTCGTAAATGC
FD964743       --> TCACCCTCGAGGAACGTCGTGCTCTCGAAGGCGAGATCGTTCGTAAATGC
FD966125       --> TCACCCTCGAGGAACGTCGTGCTCTCGAAGGCGAGATCGTTCGTAAATGC
EY938862       --> TCACCCTCGAGGAACGTCGTGCTCTCGAAGGCAAGATCGTTCGTAAATGC
EV566291       --> ..............................................ATGC
FD963834       --> ..................................................

               200    -    250
UN19952        --> CTCGCTCGCAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967767       <-- CTCGCTCGCAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAA
EV540683       <-- CTCGCTCGCAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAA
EX760536       <-- CTCGCTCGCAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAA
EX760563       <-- CTCGCTCGCAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAA
FD960665       <-- CTCGCTCGCAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAA
FD566198       <-- ..................................................
EV571458       <-- ..................................................
FD971720       --> CTCGCTCGCAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAA
EY905887       --> CTCGCTCGCAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAA
EV536171       --> CTCGCTCGCAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAA
EX756806       --> CTCGCTCGCAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAA
FD562250       --> CTCGCTCGCAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAA
FD562459       --> CTCGCTCGCAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAA
EX756837       --> CTCGCTCGCAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAA
FD543548       --> CTCGCTCGCAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAA
FD964743       --> CTCGCTCGCAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAA
FD966125       --> CTCGCTCGCAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAA
EY938862       --> CTCGCTCGTAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAA
EV566291       --> CTCGCTCGTAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAA
FD963834       --> ..................................................

               250    -    300
UN19952        --> GATCGTCTACAGGCGTTATGCGTCTCTCTTTTTCATGGTTGGCGTTGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967767       <-- GATCGTCTACAGGCGTTATACGTCTCTCTTTTTCATGGTTGGCGTTGATG
EV540683       <-- GATCGTCTACAGGCGTTATGCGTCTCTCTTTTTCATGGTTGGCGTTGATG
EX760536       <-- GATCGTCTACAGGCGTTATGCGTCTCTCTTTTTCATGGTTGGCGTTGATG
EX760563       <-- GATCGTCTACAGGCGTTATGCGTCTCTCTTTTTCATGGTTGGCGTTGATG
FD960665       <-- GATCGTCTACAGGCGTTATGCGTCTCTCTTTTTCATGGTTGGCGTTGATG
FD566198       <-- ........................ttttTTTTTCATGGTCGGCGTTGATG
EV571458       <-- .................................CATGGTTGGCGTTGATG
FD971720       --> GATCGTCTACAGGCGTTATACGTCTCTCTTTTTCATGGTTGGCGTTGATG
EY905887       --> GATCGTCTACAGGCGTTATGCGTCTCTCTTTTTCATGGTTGGCGTTGATG
EV536171       --> GATCGTCTACAGGCGTTATGCGTCTCTCTTTTTCATGGTTGGCGTTGATG
EX756806       --> GATCGTCTACAGGCGTTATGCGTCTCTCTTTTTCATGGTTGGCGTTGATG
FD562250       --> GATCGTCTACAGGCGTTATGCGTCTCTCTTTTTCATGGTCGGCGTTGATG
FD562459       --> GATCGTCTACAGGCGTTATGCGTCTCTCTTTTTCATGGTTGGCGTTGATG
EX756837       --> GATCGTCTACAGGCGTTATGCGTCTCTCTTTTTCATGGTTGGCGTTGATG
FD543548       --> GATCGTCTACAGGCGTTATGCGTCTCTCTTTTTCATGGTTGGCGTTGATG
FD964743       --> GATCGTCTACAGGCGTTATGCGTCTCTCTTTTTCATGGTTGGCGTTGATG
FD966125       --> GATCGTCTACAGGCGTTATGCGTCTCTCTTTTTCATGGTTGGCGTTGATG
EY938862       --> GATCGTCTACAGGCGTTATGCATCTCTCTTTTTCATGGTTGGCGTTGATG
EV566291       --> GATCGTCTACAGGCGTTATGCATCTCTCTTTTTCATGGTTGGCGTTGATG
FD963834       --> ..................................................

               300    -    350
UN19952        --> ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967767       <-- ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
EV540683       <-- ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
EX760536       <-- ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
EX760563       <-- ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
FD960665       <-- ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
FD566198       <-- ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
EV571458       <-- ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
FD971720       --> ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
EY905887       --> ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
EV536171       --> ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
EX756806       --> ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
FD562250       --> ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
FD562459       --> ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
EX756837       --> ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
FD543548       --> ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
FD964743       --> ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGG-CGA
FD966125       --> ACGGTGAAAAACGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
EY938862       --> ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
EV566291       --> ACGATGAAAA-CGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGA
FD963834       --> ..................................................

               350    -    400
UN19952        --> GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967767       <-- GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
EV540683       <-- GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
EX760536       <-- GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
EX760563       <-- GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
FD960665       <-- GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
FD566198       <-- GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
EV571458       <-- GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
FD971720       --> GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
EY905887       --> GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
EV536171       --> GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
EX756806       --> GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
FD562250       --> GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
FD562459       --> GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
EX756837       --> GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
FD543548       --> GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
FD964743       --> GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
FD966125       --> GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
EY938862       --> GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
EV566291       --> GACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCC
FD963834       --> ...........................................gTGTTCC

               400    -    450
UN19952        --> ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967767       <-- ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
EV540683       <-- ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
EX760536       <-- ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
EX760563       <-- ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
FD960665       <-- ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
FD566198       <-- ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
EV571458       <-- ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
FD971720       --> ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
EY905887       --> ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
EV536171       --> ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
EX756806       --> ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
FD562250       --> ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
FD562459       --> ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
EX756837       --> ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
FD543548       --> ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
FD964743       --> ATCTGGAGAAAGCTCATTTCATGCTCGAGGAA-TGGTGATGAATGGT-GC
FD966125       --> ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
EY938862       --> ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
EV566291       --> ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC
FD963834       --> ATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGTGATGAATGGTTGC

               450    -    500
UN19952        --> ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967767       <-- ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGA
EV540683       <-- ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGA
EX760536       <-- ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGA
EX760563       <-- ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTGTACAGCTCATGGA
FD960665       <-- ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGA
FD566198       <-- ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGA
EV571458       <-- ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGA
FD971720       --> ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGA
EY905887       --> ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGA
EV536171       --> ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGA
EX756806       --> ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGA
FD562250       --> ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGA
FD562459       --> ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGA
EX756837       --> ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTGTACAGCTCATGGA
FD543548       --> ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGA
FD964743       --> ATTGTCGAGACTAGCAA-GCCAACATACTTTC-CCTATACAGCTCATGGA
FD966125       --> ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGA
EY938862       --> ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGA
EV566291       --> ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGA
FD963834       --> ATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGA

               500    -    550
UN19952        --> CAAAGCCCATTAATTTTCAAAAGACTTGTTCTTTTCCTTTTCAGCACACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967767       <-- CAAAGCCCATTAATTTTCAAAAGACTTGTTCTTTTCCTTTTCAGCACACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540683       <-- CAAAGCCCATTAATTTTCAAAAGACTTGTTCTTTTCCTTTTCAGCACACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760536       <-- CAAAGCCCATTAATTTTCAAAAGACTTGTTCTTTTCCTTTTCAGCACACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760563       <-- CAAAGCCCATTAATTTTCAAAAGACTTGTTCTTTTCCTTTTCAGCACACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960665       <-- CAAAGCCCATTAATTT-CAAAAGACTTGCTCTTTTCCTTTTCACCACACT  Raphanus raphanistrum subsp. maritimus
FD566198       <-- CAAAGCCCATTAAATTTCAAAAGACTTGTTATTTTCCTTTTCAGCACACT  Raphanus sativus var. oleiformis
EV571458       <-- CAAAGCCCATTAAATTTCAAAAGACTTGTTCTTTTCCTTTTCACCACACT  Raphanus raphanistrum subsp. landra
FD971720       --> CAAAGCCCATTAATTTTCAAAAGACTTGTTCTTTTCCTTTTCAGCACACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905887       --> CAAAGCCCATTAATTTTCAAAAGACTTGTTCTTTTCCTTTTCAGCACACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536171       --> CAAAGCCCATTAATTTTCAAAAGACTTGTTCTTTTCCTTTTCAGCACACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756806       --> CAAAGCCCATTAATTTTCAAAAGACTTGTTCTTTTCCTTTTCAGCACACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD562250       --> CAAAGCCCATTAAATTTCAAAAGACTTGTTATTTTCCTTTTCAGCACACT  Raphanus sativus var. oleiformis
FD562459       --> CAAAGCCCATTAAATTTCAAAAGACTTGTTATTTTCCTTTTCAGCACACT  Raphanus sativus var. oleiformis
EX756837       --> CAAAGCCCATTAATTTTCAAAAGACTTGTTCTTTTCCTTTTCAGCACACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543548       --> CAAAGCCCATTAATTTTCAAAAGACTTGTTCTTTTCCTTTTCAGCACACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964743       --> CAA-GCCCATTA--TTTC-AAAGACTTGCTCTTTT...............  Raphanus raphanistrum subsp. maritimus
FD966125       --> CAAAGCCCATTAATTT-CAAAAGACTTGTTCTTTTCCTTTTCACCACACT  Raphanus raphanistrum subsp. maritimus
EY938862       --> CAAAGCCCATTAATTTTCAAAAGACTTGTTCTTTTCCTTTTCACCACACT  Raphanus sativus cv Early Scarlet Globe
EV566291       --> CAAAGCCCATTAAATTTCAAAAGACTTGTTCTTTTCCTTTTCACCACACT  Raphanus raphanistrum subsp. landra
FD963834       --> CAAAGCCCATTAATTT-CAAAAGACTTGTTCTTTTCCTTTTCACCACACT  Raphanus raphanistrum subsp. maritimus

               550    -    600
UN19952        --> GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967767       <-- GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
EV540683       <-- GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
EX760536       <-- GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
EX760563       <-- GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
FD960665       <-- GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
FD566198       <-- GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
EV571458       <-- GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
FD971720       --> GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
EY905887       --> GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
EV536171       --> GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
EX756806       --> GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
FD562250       --> GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
FD562459       --> GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
EX756837       --> GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
FD543548       --> GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
FD964743       --> ..................................................
FD966125       --> GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
EY938862       --> GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
EV566291       --> GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT
FD963834       --> GTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATT

               600    -    650
UN19952        --> CGAATCTAAAGAACAATTTGTTTTCTTCCATGCTTTGAATGTTAGTGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967767       <-- CGAATCTAAAGAACAATTTGTTTTC.........................
EV540683       <-- CGAATCTAAAGAACAATTTGTTTTCc........................
EX760536       <-- CGAATCTAAAGAACAATTTGTTTTCTTC......................
EX760563       <-- CGAATCTAAAGAACAATTTGTTTTCTTCCATGCTTTGAATGTTAGTGGTT
FD960665       <-- CGAATCTAAAGAACAATTTGTTTTCTTC......................
FD566198       <-- CGAATCTAAAGAACAATTTGTTTTCTTCCATGCTTTGAATGTTAGTGGTT
EV571458       <-- CGAATCTAAAGAACAATTCGTTTTCc........................
FD971720       --> CGAATCTAAAGAACAATTTGTTTTC.........................
EY905887       --> CGAATCTAAAGAACAATTTGT.............................
EV536171       --> CGAATCTAAAGAACAATTTGTTTTCc........................
EX756806       --> CGAATCTAAAGAACAATTTGTTTTCTTC......................
FD562250       --> CGAATCTAAAGAACAATTTGTTTTCTTCCATGCTTTGAATGTTAGTGGTT
FD562459       --> CGAATCTAAAGAACAATTTGTTTT..........................
EX756837       --> CGAATCTAAAGAACAATTTGTTTTCTTCCATGCTTTGAATGTTAGTGGTT
FD543548       --> CGAATCTAAAGAACAATTTGTTTTCTT.......................
FD964743       --> ..................................................
FD966125       --> CGAATCTAAAGAACAA..................................
EY938862       --> CGAATCTAAAGAACAATTTGTTTT..........................
EV566291       --> CGAATCTAAAGAACAATTCGTTTTCc........................
FD963834       --> CGAATCTAAAGAACAATTTGTTTTCTTC......................

               650    -    700
UN19952        --> AGAGTAGGGATGTTATGTGGGGAAGATCCCCCCATCTAGACTCACGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967767       <-- ................................................
EV540683       <-- ................................................
EX760536       <-- ................................................
EX760563       <-- AG..............................................
FD960665       <-- ................................................
FD566198       <-- AGAGTAGGGATGTTATGTGGGGAAGATCCCCCCATCTAGACTCACGTT
EV571458       <-- ................................................
FD971720       --> ................................................
EY905887       --> ................................................
EV536171       --> ................................................
EX756806       --> ................................................
FD562250       --> AGAGTAGGGATGTTATGTGGGGAA........................
FD562459       --> ................................................
EX756837       --> AG..............................................
FD543548       --> ................................................
FD964743       --> ................................................
FD966125       --> ................................................
EY938862       --> ................................................
EV566291       --> ................................................
FD963834       --> ................................................