1      -     51
UN19973        --> GGATACGTACAGGATAGAATAAACCGTGTTAAGTCATCATACTAACTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969071       <-- GGATACGTACAGGATAGAATAAACCGTGTTAAGTCATCATACTAACTATC
EY902763       <-- ............................ggAAGTCATCATACTAACTATC
FD973361       --> GGATACGTACAGGATAGAATAAACCGTGTTAAGTCATCATACTAACTATC
EW722436       --> ...........................gggAAGTCATCATACTAACTATC
EW722525       --> ...........................gggAAGTCATCATACTAACTATC
EW726451       --> ...........................gggAAGTCATCATACTAACTATC
EY906644       --> ............................ggAAGTCATCATACTAACTATC
FY435404       --> ..................................................
FY428347       --> ..................................................
FY442100       --> ..................................................
FY441997       --> ..................................................
FY442404       --> ..................................................

               51     -    101
UN19973        --> ACAGACACACACAAAAGGGACAAGTTCTCATCTAAGATTTGGAAAAA-CT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969071       <-- ACAGACACACACAAAAGCGACAAGTTCTCATCTAAGATTTGAAAAAAACT
EY902763       <-- ACAGACACACACAAAAGGGACAAGTTCTCATCTAAGATTTGGAAAAA-CT
FD973361       --> ACAGACACACACAAAAGCGACAAGTTCTCATCTAAGATTTGAAAAAAACT
EW722436       --> ACAGACACACACAAAAGGGACAAGTTCTCATCTAAGATTTGGAAAAA-CT
EW722525       --> ACAGACACACACAAAAGGGACAAGTTCTCATCTAAGATTTGGAAAAA-CT
EW726451       --> ACAGACACACACAAAAGGGACAAGTTCTCATCTAAGATTTGGAAAAA-CT
EY906644       --> ACAGACACACACAAAAGGGACAAGTTCTCATCTAAGATTTGGAAAAA-CT
FY435404       --> .......CACACAAAAGGGACAAGTTCTCATCTAAGATTTGGAAAAA-CT
FY428347       --> .......................GTTCTCATCTA-GATTTGGAAAA--CT
FY442100       --> .......................GTTCTCATCTA-GATTTGGAAAA--CT
FY441997       --> ...................................GATTTGGAAAA--CT
FY442404       --> ...................................GATTTGGAAAA--CT

               101    -    151
UN19973        --> GAGTTGTATGGCAACCAGATCAAAGAGCTTTCAATTGATCACCGGCTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969071       <-- GAGTTTTATGGCAACCAGATCAAGGAGCTTTCAATTGATCACCGGCTTAA
EY902763       <-- GAGTTGTATGGCAACCAGATCAAAGAGCTTTCAATTGATCACCGGCTTTA
FD973361       --> GAGTTTTATGGCAACCAGATCAAGGAGCTTTCAATTGATCACCGGCTTAA
EW722436       --> GAGTTGTATGGCAACCAGATCAAAGAGCTTTCAATTGATCACCGGCTTTA
EW722525       --> GAGTTGTATGGCAACCAGATCAAAGAGCTTTCAATTGATCACCGGCTTTA
EW726451       --> GAGTTGTATGGCAACCAGATCAAAGAGCTTTCAATTGATCACCGGCTTTA
EY906644       --> GAGTTGTATGGCAACCAGATCAAAGAGCTTTCAATTGATCACCGGCTTTA
FY435404       --> GAGTTGTATGGCAACCAGATCAAAGAGCTTTCAATTGATCACCGGCTTTA
FY428347       --> GAGTTGTATGGCAACCAGATCAAAGAGCTTTCAATTGATCACCGGCTTTA
FY442100       --> GAGTTGTATGGCAACCAGATCAAAGAGCTTTCAATTGATCACCGGCTTTA
FY441997       --> GAGTTGTATGGCAACCAGATCAAAGAGCTTTCAATTGATCACCGGCTTTA
FY442404       --> GAGTTGTATGGCAACCAGATCAAAGAGCTTTCAATTGATCACCGGCTTTA

               151    -    201
UN19973        --> GGAAGCACCTCGTTGACGCCGTCGTCCCACGCGCCACCGCGTCTGCTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969071       <-- GGAAGCACCTCGCTGAGGCCGTCGTCCCACGCGCCACCGCGTCTGCTCCC
EY902763       <-- GGAAGCACCTCGTTGACGCCGTCGTCCCACGCGCCACCGCGTCTGCTCCC
FD973361       --> GGAAGCACCTCGCTGAGGCCGTCGTCCCACGCGCCACCGCGTCTGCTCCC
EW722436       --> GGAAGCACCTCGTTGACGCCGTCGTCCCACGCGCCACCGCGTCTGCTCCC
EW722525       --> GGAAGCACCTCGTTGACGCCGTCGTCCCACGCGCCACCGCGTCTGCTCCC
EW726451       --> GGAAGCACCTCGTTGACGCCGTCGTCCCACGCGCCACCGCGTCTGCTCCC
EY906644       --> GGAAGCACCTCGTTGACGCCGTCGTCCCACGCGCCACCGCGTCTGCTCCC
FY435404       --> GGAAGCACCTCGTTGACGCCGTCGTCCCACGCGCCACCGCGTCTGCTCCC
FY428347       --> GGAAGCACCTCGTTGACGCCGTCGTCCCACGCGCCACCGCGTCTGCTCCC
FY442100       --> GGAAGCACCTCGTTGACGCCGTCGTCCCACGCGCCACCGCGTCTGCTCCC
FY441997       --> GGAAGCACCTCGTTGACGCCGTCGTCCCACGCGCCACCGCGTCTGCTCCC
FY442404       --> GGAAGCACCTCGTTGACGCCGTCGTCCCACGCGCCACCGCGTCTGCTCCC

               201    -    251
UN19973        --> ATCACTTCAAGAAGTTACTCCTCGGGGTATGACAAGAACGTGGAGGACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969071       <-- ATCACTTCAAGAAGTTACTCCTCGGGGTATGACAAGAACGTGGAGGACGA
EY902763       <-- ATCACTTCAAGAAGTTACTCCTCGGGGTATGACAAGAACGTGGAGGACGA
FD973361       --> ATCACTTCAAGAAGTTACTCCTCGGGGTATGACAAGAACGTGGAGGACGA
EW722436       --> ATCACTTCAAGAAGTTACTCCTCGGGGTATGACAAGAACGTGGAGGACGA
EW722525       --> ATCACTTCAAGAAGTTACTCCTCGGGGTATGACAAGAACGTGGAGGACGA
EW726451       --> ATCACTTCAAGAAGTTACTCCTCGGGGTATGACAAGAACGTGGAGGACGA
EY906644       --> ATCACTTCAAGAAGTTACTCCTCGGGGTATGACAAGAACGTGGAGGACGA
FY435404       --> ATCACTTCAAG---TTACTCCTCGGGGTATGACAAGAACGTGGAGGACGA
FY428347       --> ATCACTTCAAGAAGTTACTCCTCGGGGTATGACAAGAACGTGGAGGACGA
FY442100       --> ATCACTTCAAGAAGTTACTCCTCGGGGTATGACAAGAACGTGGAGGACGA
FY441997       --> ATCACTTCAAGAAGTTACTCCTCGGGGTATGACAAGAACGTGGAGGACGA
FY442404       --> ATCACTTCAAGAAGTTACTCCTCGGGGTATGACAAGAACGTGGAGGACGA

               251    -    301
UN19973        --> ATTGCAGGCGAGTGCAGTTCCTGATGATGTCATAAAGCCAGATTCTGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969071       <-- ATTGCAGGCAATTGCAGTTCCTGATGATGTCATAAAGCCAGATTCTGATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902763       <-- ATTGCAGGCAAGTGCAGTTCCTGATGATGTCATAAAGCCAGATTCTGATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973361       --> ATTGCAGGCAATTGCAGTTCCTGATGATGTCATAAAGCCAGATTCTGATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW722436       --> ATTGCAGGCGAGTGCAGTTCCTGATGATGTCATAAAGCCAGATTCTGATA  Raphanus sativus cv Early Scarlet Globe
EW722525       --> ATTGCAGGCGAGTGCAGTTCCTGATGATGTCATAAAGCCAGATTCTGATA  Raphanus sativus cv Early Scarlet Globe
EW726451       --> ATTGCAGGCGAGTGCAGTTCCTGATGATGTCATAAAGCCAGATTCTGATA  Raphanus sativus cv Early Scarlet Globe
EY906644       --> ATTGCAGGCAAGTGCAGTTCCTGATGATGTCATAAAGCCAGATTCTGATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY435404       --> ATTGCAGGCGAGTGCAGTTCCTGATGATGTCATAAAGCCAGATTCTGATA  Raphanus sativus cv GSK3-1
FY428347       --> ATTGCAGGCGAGTGCAGTTCCTGATGATGTCATAAAGCCAGATTCTGATA  Raphanus sativus cv GSK3-1
FY442100       --> ATTGCAGGCGAGTGCAGTTCCTGATGATGTCATAAAGCCAGATTCTGATA  Raphanus sativus cv GSK3-1
FY441997       --> ATTGCAGGCGAGTGCAGTTCCTGATGATGTCATAAAGCCAGATTCTGATA  Raphanus sativus cv GSK3-1
FY442404       --> ATTGCAGGCGAGTGCAGTTCCTGATGATGTCATAAAGCCAGATTCTGATA  Raphanus sativus cv GSK3-1

               301    -    351
UN19973        --> AATATTGGTCTCCTCATCCTCAAACCGGAGTCTTTGGCCCTTCCACGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969071       <-- AATATTGGTCTCCTCATCCTCAAACCGGAGTCTTTGGCCCTTCCACGACT
EY902763       <-- AATATTGGTCTCCTCATCCTCAAACCGGAGTCTTTGGCCCTTCCACGACT
FD973361       --> AATATTGGTCTCCTCATCCTCAAACCGGAGTCTTTGGCCCTTCCACGACT
EW722436       --> AATATTGGTCTCCTCATCCTCAAACCGGAGTCTTTGGCCCTTCCACGACT
EW722525       --> AATATTGGTCTCCTCATCCTCAAACCGGAGTCTTTGGCCCTTCCACGACT
EW726451       --> AATATTGGTCTCCTCATCCTCAAACCGGAGTCTTTGGCCCTTCCACGACT
EY906644       --> AATATTGGTCTCCTCATCCTCAAACCGGAGTCTTTGGCCCTTCCACGACT
FY435404       --> AATATTGGTCTCCTCATCCTCAAACCGGAGTCTTTGGCCCTTCCACGACT
FY428347       --> AATATTGGTCTCCTCATCCTCAAACCGGAGTCTTTGGCCCTTCCACGACT
FY442100       --> AATATTGGTCTCCTCATCCTCAAACCGGAGTCTTTGGCCCTTCCACGACT
FY441997       --> AATATTGGTCTCCTCATCCTCAAACCGGAGTCTTTGGCCCTTCCACGACT
FY442404       --> AATATTGGTCTCCTCATCCTCAAACCGGAGTCTTTGGCCCTTCCACGACT

               351    -    401
UN19973        --> GAGCACAGTCCAGCAGCTGAGGCTGCTCGCCAAGACTCAGCGGTGCTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969071       <-- GAGCACAGTCCAGCAGCTGAGGCTGCTTGCCAAGACTCAGCGTTGTTAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902763       <-- GAGCGCAGTCCAGCAGCTGAGGCTGCTTGCCAACAATCAGCGGTGTTAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973361       --> GAGCACAGTCCAGCAGCTGAGGCTGCTTGCCAAGACTCAGCGTTGTTAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW722436       --> GAGCACAGTCCAGCAGCTGAGGCTGCTCGCCAAGACTCAGCGGTGCTAGA  Raphanus sativus cv Early Scarlet Globe
EW722525       --> GAGCACAGTCCAGCAGCTGAGGCTGCTCGCCAAGACTCAGCGGTGCTAGA  Raphanus sativus cv Early Scarlet Globe
EW726451       --> GAGCACAGTCCAGCAGCTGAGGCTGCTCGCCAAGACTCAGCGGTGCTAGA  Raphanus sativus cv Early Scarlet Globe
EY906644       --> GAGCGCAGTCCAGCAGCTGAGGCTGCTTGCCAACAATCAGCGGTGTTAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY435404       --> GAGCACAGTCCAGCAGCTGAGGCTGCTCGCCAAGACTCAGCGGTGCTAGA  Raphanus sativus cv GSK3-1
FY428347       --> GAGCACAGTCCAGCAGCTGAGGCTGCTCGCCAAGACTCAGCGGTGCTAGA  Raphanus sativus cv GSK3-1
FY442100       --> GAGCACAGTCCAGCAGCTGAGGCTGCTCGCCAAGACTCAGCGGTGCTAGA  Raphanus sativus cv GSK3-1
FY441997       --> GAGCACAGTCCAGCAGCTGAGGCTGCTCGCCAAGACTCAGCGGTGCTAGA  Raphanus sativus cv GSK3-1
FY442404       --> GAGCACAGTCCAGCAGCTGAGGCTGCTCGCCAAGACTCAGCGGTGCTAGA  Raphanus sativus cv GSK3-1

               401    -    451
UN19973        --> GGAGACTGCTTGGTTTCGTCCCACAAGTCTCGAGGACTCGGACAAGACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969071       <-- GGAGACTGCTTGGTTTCGTCCCACAAGTCTCGAGGACTCGGACAAGACTC
EY902763       <-- GGAGACTGCTTGGTTTCGTCCCACAAGTCTCGAGGACTCGGACAAGACTC
FD973361       --> GGAGACTGCTTGGTTTCGTCCCACAAGTCTCGAGGACTCGGACAAGACTC
EW722436       --> GGAGACTGCTTGGTTTCGTCCCACAAGTCTCGAGGACTCGGACAAGACTC
EW722525       --> GGAGACTGCTTGGTTTCGTCCCACAAGTCTCGAGGACTCGGACAAGACTC
EW726451       --> GGAGACTGCTTGGTTTCGTCCCACAAGTCTCGAGGACTCGGACAAGACTC
EY906644       --> GGAGACTGCTTGGTTTCGTCCCACAAGTCTCGAGGACTCGGACAAGACTC
FY435404       --> GGAGACTGCTTGGTTTCGTCCCACAAGTCTCGAGGACTCGGACAAGACTC
FY428347       --> GGAGACTGCTTGGTTTCGTCCCACAAGTCTCGAGGACTCGGACAAGACTC
FY442100       --> GGAGACTGCTTGGTTTCGTCCCACAAGTCTCGAGGACTCGGACAAGACTC
FY441997       --> GGAGACTGCTTGGTTTCGTCCCACAAGTCTCGAGGACTCGGACAAGACTC
FY442404       --> GGAGACTGCTTGGTTTCGTCCCACAAGTCTCGAGGACTCGGACAAGACTC

               451    -    501
UN19973        --> ACCATGTTTAAGTCTATCTCTCTTTTCTCCTTCTGTTTGTTGTACTTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969071       <-- ACCATGTTTAAGTCTATCTATCTTTTCTCCTTCCGTTTGTTGTACTTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902763       <-- GCCATGTTTAAGTCTATCTATCTTTTCTCCTTCCGTTTGTTGTACTTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973361       --> ACCATGTTTAAGTCTATCTATCTTTTCTCCTTCCGTTTGTTGTACTTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW722436       --> ACCATGTTTAAGTCTATCTCTCTTTTCTCCTTCTGTTTGTTGTACTTTCT  Raphanus sativus cv Early Scarlet Globe
EW722525       --> ACCATGTTTAAGTCTATCTCTCTTTTCTCCTTCTGTTTGTTGTACTTTCT  Raphanus sativus cv Early Scarlet Globe
EW726451       --> ACCATGTTTAAGTCTATCTCTCTTTTCTCCTTCTGTTTGTTGTACTTTCT  Raphanus sativus cv Early Scarlet Globe
EY906644       --> GCCATGTTTAAGTCTATCTATCTTTTCTCCTTCCGTTTGTTGTACTTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY435404       --> ACCATGTTTAAGTCTATCTCTCTTTTCTCC....................  Raphanus sativus cv GSK3-1
FY428347       --> ACCATGTTTAAGTCTATCTCTCTTTTCTCCTTCTGTTTGTTGTACTTTCT  Raphanus sativus cv GSK3-1
FY442100       --> ACCATGTTTAAGTCTATCTCTCTTTTCTCCTTCTGTTTGTTGTACTTTCT  Raphanus sativus cv GSK3-1
FY441997       --> ACCATGTTTAAGTCTATCTCTCTTTTCTCCTTCTGTTTGTTGTACTTTCT  Raphanus sativus cv GSK3-1
FY442404       --> ACCATGTTTAAGTCTATCTCTCTTTTCTCCTTCTGTTTGTTGTACTTTCT  Raphanus sativus cv GSK3-1

               501    -    551
UN19973        --> GATGTGTACTGTTGTAATAAATCTCGAAGTAGACAAACTGTATGTCAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969071       <-- GATGTGTAATGTTGTAATAAATCTCGAAGTAGACAAACTGTATGTCAAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902763       <-- GATGTGTAATGTTGTAATAAATCTCGAAGTAGACAAACTGTATGTCAAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973361       --> GATGTGTAATGTTGTAATAAATCTCGAAGTAGACAAACTGTATGTCAAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW722436       --> GATGTGTACTGTTGTAATAAATCTCGAAGTAGACAAACTGTATGTCAAGT  Raphanus sativus cv Early Scarlet Globe
EW722525       --> GATGTGTACTGTTGTAATAAATCTCGAAGTAGACAAACTGTATGTCAAGT  Raphanus sativus cv Early Scarlet Globe
EW726451       --> GATGTGTACTGTTGTAATAAATCTCGAAGTAGACAAACTGTATGTCAAGT  Raphanus sativus cv Early Scarlet Globe
EY906644       --> GATGTGTAATGTTGTAATAAATCTCGAAGTAGACAAACTGTATGTCAAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY435404       --> ..................................................  Raphanus sativus cv GSK3-1
FY428347       --> GATGTGTACTGTTGTAATAAATCTCGAAGTAGACAAACTGTATGTCAAGT  Raphanus sativus cv GSK3-1
FY442100       --> GATGTGTACTGTTGTAATAAATCTCGAAGTAGACAAACTGTATGTCAAGT  Raphanus sativus cv GSK3-1
FY441997       --> GATGTGTACTGTTGTAATAAATCTCGAAGTAGACAAACTGTATGTCAAGT  Raphanus sativus cv GSK3-1
FY442404       --> GATGTGTACTGTTGTAATAAATCTCGAAGTAGACAAACTGTATGTCAAGT  Raphanus sativus cv GSK3-1

               551    -    601
UN19973        --> AACGTCCTGGAAAACTAAATTAAACCAGAACCAAATTGGATTTCATAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969071       <-- AACGTCCTGGAAAACTAAATTAAACCAG......................
EY902763       <-- AACGTCCTGGAAAACTAAATTAAACCAGAACCAAATTGGATTTCATAGGT
FD973361       --> AACGTCCTGGAAAACTAAATTAAACCAG......................
EW722436       --> AACGTCCTGGAAAACTAAATTAAACCAGAACCAAATTCGATT........
EW722525       --> AACGTCCTGGAAAACTAAATTAAACCAGAACCAAATTCGATT........
EW726451       --> AACGTCCTGGA.......................................
EY906644       --> AACGTCCTGGAAAACTAAATTAAACCAGAACCAAATTGGATTTCATAGGT
FY435404       --> ..................................................
FY428347       --> AACGTCCTGGAAAACTAAATTAAACCAGAACC..................
FY442100       --> AACGTCCTGGAAAACTAAATTAAACCAG......................
FY441997       --> AACGTCCTGGA.......................................
FY442404       --> AACGTCCTGGA.......................................

               601    -    651
UN19973        --> TCCAGTAACCATTCGTGAGCTGAAACTAACCGGTTTTGGGAAACTCCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969071       <-- ..................................................
EY902763       <-- TCCAGTAACCATTCGTGAGCTGAAACTAACCGGTTTTGGGAAACTCCAAC
FD973361       --> ..................................................
EW722436       --> ..................................................
EW722525       --> ..................................................
EW726451       --> ..................................................
EY906644       --> TCCAGTAACCATTCGTGAGCTGAAACTAACCGGTTTTGGGAAACTCCAAC
FY435404       --> ..................................................
FY428347       --> ..................................................
FY442100       --> ..................................................
FY441997       --> ..................................................
FY442404       --> ..................................................

               651    -    701
UN19973        --> AAGT
                   ~~~~
FD969071       <-- ....
EY902763       <-- AAGT
FD973361       --> ....
EW722436       --> ....
EW722525       --> ....
EW726451       --> ....
EY906644       --> AAGT
FY435404       --> ....
FY428347       --> ....
FY442100       --> ....
FY441997       --> ....
FY442404       --> ....