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Alignment for radish unigene UN19990

               1      -     51
UN19990        --> CATTGTAAATTATTTTGGATATTATTATAAATTTCAAAACTGTATTCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551514       <-- ..TTGTAAATTATTTTGGATATTATTATAAATTTCAAAACTGTATTCGTC
EY932012       <-- .....................................tttttttTTCGTC
EY915343       <-- ..................................................
EV537344       <-- ..................................................
EX897152       <-- ..................................................
EY899449       <-- ..................................................
FD563081       <-- ..................................................
FD550956       <-- ..................................................
FD569202       <-- ..................................................
EX905757       <-- ..................................................
EV546596       --> CATTGTAAATTATTTTGGATATTATTATAAATTTCAAAACTGTATTCGTC
EX900965       --> cgTTGTAAATTATTTTGGATAATATTATAAATTTCAAAACTGTATTCGTC
FD566812       --> ....GTAAATTATTTTGGATAATATTATAAATTTCAAAACTGTATTCGTC
EY895216       --> ..............................................CGTC
EY927829       --> ..............................................CGTC
FD546845       --> ..............................................CGTC
FD573451       --> ...............................................GTC
EV541592       --> ..................................................
EY911206       --> ..................................................

               51     -    101
UN19990        --> AAGAACATTGCTACATATGCATCTATATTGTGTATGTATCCGTATTATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551514       <-- AAGAACATTGCTACATATGCATCTATATTGTGTATGTATCCGTATTATAC
EY932012       <-- AAGAACAT-GCTACATATGCATCTATAT-GTGTATGTATC-GTATTATAC
EY915343       <-- ..................................................
EV537344       <-- ..................................................
EX897152       <-- ..................................................
EY899449       <-- ..................................................
FD563081       <-- ..................................................
FD550956       <-- ..................................................
FD569202       <-- ..................................................
EX905757       <-- ..................................................
EV546596       --> AAGAACATTGCTACATATGCATCTATATTGTGTATGTATCCGTATTATAC
EX900965       --> AAGAACATTGCTACATATGCATCTATATTGTGTATGTATCCGTATTATAC
FD566812       --> AAGAACATTGCTACATATGCATCTATATTGTGTATGTATCCGTATTATAC
EY895216       --> AAGAACATTGCTACATATGCATCTATGTTGTGTATGTATCCGTATTATAC
EY927829       --> AAGAACATTGCTACATATGCATCTATATTGTGTATGTATCCGTATTATAC
FD546845       --> AAGAACATTGCTACATATGCATCTATATTGTGTATGTATCCGTATTATAC
FD573451       --> AAGAACATTGCTACATATGCATCTATATTGTGTATGTATCCGTATTATAC
EV541592       --> .............................GTGTATGTATCCGTATTATAC
EY911206       --> .............................GTGTATGTATCCGTATTATAC

               101    -    151
UN19990        --> ATAAATTTCATGTATCTTTACATCAAATTCTAAATCTAAAAACAAAAAA-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551514       <-- ATAAATTTCATGTATCTTTACATCAAATTCTAAATCTAAAAACAAAAAAA
EY932012       <-- ATAAATTTCATGTATCTT-ACATCAAATTCTAAATCTAAAA-CAAAAA--
EY915343       <-- ........................................AACAAAAAA-
EV537344       <-- .........................................caAAAAAA-
EX897152       <-- ..................................................
EY899449       <-- ..................................................
FD563081       <-- ..................................................
FD550956       <-- ..................................................
FD569202       <-- ..................................................
EX905757       <-- ..................................................
EV546596       --> ATAAATTTCATGTATCTTTACATCAAATTCTAAATCTAAAAACAAAAAA-
EX900965       --> ATAAATTTCATGTATCTTTACATCAAATTCTAAATCTAAAAACAAAAAA-
FD566812       --> ATAAATTTCATGTATCTTTACATCAAATTCTAAATCTAAAAACAAAAAA-
EY895216       --> ATAAATTTCATGTATCTTTACATCAAATTCTAAATCTAAAAACAAAAAA-
EY927829       --> ATAAATTTCATGTATCTTTACATCAAATTCTAAATCTAAAAACAAAAAA-
FD546845       --> ATAAATTTCATGTATCTTTACATCAAATTCTAAATCTAAAAACAAAAAA-
FD573451       --> ATAAATTTCATGTATCTTTACATCAAATTCTAAATCTAAAAACAAAAAA-
EV541592       --> ATAAATTTCATGTATCTTTACATCAAATTCCAAATCTAAAAACAAAAAAA
EY911206       --> ATAAATTTCATGTATCTTTACATCAAATTCCAAGTCTAAAAACAAAAAAA

               151    -    201
UN19990        --> CAAATAAAAATGAAAAGATAAAATCACGTGGAAATGGATCTAACTCATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551514       <-- CAAATAAAAATGAAAAGATAAAATCACGTGGAAATGGATCTAACTCATTG
EY932012       <-- CAAATAAAAATGAACAGATAAA-TCACGTGGAAATGGATCTAACTCATTG
EY915343       <-- CAAATAAAA-TGAAAAGATAAAATCACGTGGAAATGGATCTAACTCATTG
EV537344       <-- CAAATAAAAATGAAAAGATAAAATCACGTGGAAATGGATCTAACTCATTG
EX897152       <-- ..................................................
EY899449       <-- ..................................................
FD563081       <-- ..................................................
FD550956       <-- ..................................................
FD569202       <-- ..................................................
EX905757       <-- ..................................................
EV546596       --> CAAATAAAAATGAAAAGATAAAATCACGTGGAAATGGATCTAACTCATTG
EX900965       --> CAAATAAAAATGAAAAGATAAAATCACGTGGAAATGGATCTAACTCATTG
FD566812       --> CAAATAAAAATGAAAAGATAAAATCACGTGGAAATGGATCTAACTCATTG
EY895216       --> CAAATAAAAATGAAAAGATAAAATCACGTGGAAATGGATCTAACTCATTG
EY927829       --> CAAATAAAAATGAACAGATAAAATCACGTGGAAATGGATCTAACTCATTG
FD546845       --> CAAATAAAAATGAAAAGATAAAATCACGTGGAAATGGATCTAACTCATTG
FD573451       --> CAAATAAAAATGAAAAGATAAAATCACGTGGAAATGGATCTAACTCATTG
EV541592       --> CAAATAAAAATGAAAAGATAAAATCACGTGGAAATGGATCTAACTCATTG
EY911206       --> CAAATAAAAATGAAAAGATAAAATCACGTGGAAATGGATCTAACTCATTG

               201    -    251
UN19990        --> AACAAAACCCTGAATAGTTTTGTGTTTGGTGTGGTATTCATCATAAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551514       <-- AACAAAACCCTGAATAGTTTTGTGTTTGGTGTGGTATTCATCATAAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY932012       <-- AACAAAACCCTGAATAGTTTCGTGTTTGGTGTGGTATTCATCATAAGCCA  Raphanus sativus var. oleiformis
EY915343       <-- AACAAAACCCTGAATAGTTTTGTGTTTGGTGTGGAATTCATCATAAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537344       <-- AACAAAACCCTGAATAGTTTTGTGTTTGGTGTGGAATTCATCATAAGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897152       <-- ........CCTGAATAGTTT-GTGTTTGGTGTGGTATTCATCATAAGCCA  Raphanus sativus cv Early Scarlet Globe
EY899449       <-- ............AATAGTTTTGTGTTTGGTGTGGTATTCATCATAAGCCA  Raphanus raphanistrum subsp. maritimus
FD563081       <-- ............AATAGTTTTGTGTTTGGTGTGGTATTCATCATAAGCCA  Raphanus sativus var. oleiformis
FD550956       <-- .............ATAGTTT-GTGTTTGGTGTGGTATTCATCATAAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD569202       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX905757       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV546596       --> AACAAAACCCTGAATAGTTTTGTGTTTGGTGTGGTATTCATCATAAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900965       --> AACAAAACCCTGAATAGTTTTGTGTTTGGTGTGGTATTCATCATAAGCCA  Raphanus sativus cv Early Scarlet Globe
FD566812       --> AACAAAACCCTGAATAGTTTTGTGTTTGGTGTGGTATTCATCATAAGCCA  Raphanus sativus var. oleiformis
EY895216       --> AATAAAACCCTGAATAGTTTTGTGTTTGGTGTGGTATTCATCATAAGCCA  Raphanus raphanistrum subsp. maritimus
EY927829       --> AACAAAACCCTGAATAGTTTCGTGTTTGGTGTGGTATTCATCATAAGCCA  Raphanus sativus var. oleiformis
FD546845       --> AACAAAACCCTGAATAGTTTTGTGTTTGGTGTGGTATTCATCATAAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD573451       --> AACAAAACCCTGAATAGTTTTGTGTTTGGTGTGGTATTCATCATAAGCCA  Raphanus sativus cv Early Scarlet Globe
EV541592       --> AACAAAACCCTGAATAGTTTTGTGTTTGGTGTGGAATTCATCATAAGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY911206       --> AACAAAACCCTGAATAGTTTTGTGTTTGGTGTGGAATTCATCATAAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN19990        --> GAGTCTAAAGCGAGAGCATCAGGTCCTTTCATGATTCTGAGTCTCTTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551514       <-- GAGTCTAAAGCGAGAGCATCAGGTCCTTTCATGATTCTGAGTCTCTTACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY932012       <-- GAGTCTAAAGCGAGAGCATCAGGTCCTTTCATGATTCTGAGTCTCTTACA  Raphanus sativus var. oleiformis
EY915343       <-- GAGTCTAAAGCAAGAGCATCAGGTCCTTTCATGATTCTGAGTCTCTTACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537344       <-- GAGTCTAAAGCAAGAGCATCAGGTCCTTTCATGATTCTGAGTCTCTTACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897152       <-- GAGTCTAAAGCGAGAGCATCAGGTCCTTTCATGATTCTGAGTCTCTTACA  Raphanus sativus cv Early Scarlet Globe
EY899449       <-- GAGTCTAAAGCGAGAGCATCAGGTCCTTTCATGATTCTGAGTCTCTTACA  Raphanus raphanistrum subsp. maritimus
FD563081       <-- GAGTCTAAAGCGAGAGCATCAGGTCCTTTCATGATTCTGAGTCTCTTACA  Raphanus sativus var. oleiformis
FD550956       <-- GAGTCTAAAGCGAGAGCATCAGGTCCTTTCATGATTCTGAGTCTCTTACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD569202       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX905757       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV546596       --> GAGTCTAAAGCGAGAGCATCAGGTCCTTTCATGATTCTGAGTCTCTTACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900965       --> GAGTCTAAAGCGAGAGCATCAGGTCCTTTCATGATTCTGAGTCTCTTACA  Raphanus sativus cv Early Scarlet Globe
FD566812       --> AAGTCTAAAGCGAGAGCATCAGGTCCTTTCATGATTCTGAGTCTCTTACA  Raphanus sativus var. oleiformis
EY895216       --> GAGTCTAAAGCGAGAGCATCAGGTCCTTTCATGATTCTGAGTCTCTTACA  Raphanus raphanistrum subsp. maritimus
EY927829       --> GAGTCTAAAGCGAGAGCATCAGGTCCTTTCATGATTCTGAGTCTCTTACA  Raphanus sativus var. oleiformis
FD546845       --> GAGTCTAAAGCGAGAGCATCAGGTCCTTTCATGATTCTGAGTCTCTTACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD573451       --> GAGTCTAAAGCGAGAGCATCAGGTCCTTTCATGATTCTGAGTCTCTTACA  Raphanus sativus cv Early Scarlet Globe
EV541592       --> GAGTCTAAAGCAAGAGCATCAGGTCCTTTCATGATTCTGAGTCTCTTACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY911206       --> GAGTCTAAAGCAAGAGCATCAGGTCCTTTCATGATTCTGAGTCTCTTACA  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN19990        --> AGAGGAAGAGAACATATCCCATGGAACATCACCAACCAACATCCAGTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551514       <-- AGAGGAAGAGAACATATCCCATGGAACATCACCAACCAACATCCAGTCTC
EY932012       <-- AGAGGAAGAGAACATATCCCATGGAACATCACCAACCAACATCCAGTCTC
EY915343       <-- AGAGGAAGAGAACATATCCCATGGAACATCACCAACCAACATCCAGTCTC
EV537344       <-- AGAGGAAGAGAACATATCCCATGGAACATCACCAACCAACATCCAGTCTC
EX897152       <-- AGAGGAAGAGAACATATCCCATGGAACATCACCAACCAACATCCAGTCTC
EY899449       <-- AGAGGAAGAGATCATATCCCATGGAACATCACCAACCAACATCCAGTCTC
FD563081       <-- AGAGGAAGAGAACATATCCCATGGAACATCACCAACCAACATCCAGTCTC
FD550956       <-- AGAGGAAGAGAACATATCCCATGGAACATCACCAACCAACATCCAGTCTC
FD569202       <-- ..................................................
EX905757       <-- ..................................................
EV546596       --> AGAGGAAAAGAACATATCCCATGGAACATCACCAACCAACATCCAGTCTC
EX900965       --> AGAGGAAGAGAACATATCCCATGGAACATCACCAACCAACATCCAGTCTC
FD566812       --> AGAGGAAAAGAACATATCCCATGGAACATCACCAACCAACATCCAGTCTC
EY895216       --> AGAGGAAGAGATCATATCCCATGGAACATCACCAACCAACATCCAGTCTC
EY927829       --> AGAGGAAGAGAACATATCCCATGGAACATCACCAACCAACATCCAGTCTC
FD546845       --> AGAGGAAGAGAACATATCCCATGGAACATCACCAACCAACATCCAGTCTC
FD573451       --> AGAGGAAGAGAACATATCCCATGGAACATCACCAACCAACATCCAGTCTC
EV541592       --> AGAGGAAGAGAACATATCCCATGGAACATCACCAACCAACATCCAGTCTC
EY911206       --> AGAGGAAGAAAACATATCCCATGGAACATCACCAACCAACATCCAGTCTC

               351    -    401
UN19990        --> CATCTTTATCCTCGTACGTTGGTACAACTTCAGATCCTCTGTACCCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551514       <-- CATCTTTATCCTCGTACGTTGGTACAACTTCAGATCCTCTGTACCCTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY932012       <-- CATCTTTATCCTCGTACGTTGGTACAACTTCAGATCCTCTGTACCCTTCT  Raphanus sativus var. oleiformis
EY915343       <-- CATCTTTATCCTCGTACGTTGGTACAACTTCAGATCCTTCGTACCCTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537344       <-- CATCTTTATCCTCGTACGTTGGTACAACTTCAGATCCTTCGTACCCTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897152       <-- CATCTTTATCCTCGTACGTTGGTACAACTTCAGATCCTCTGTACTCTTCT  Raphanus sativus cv Early Scarlet Globe
EY899449       <-- CATCTTTATCCTCGTACGTTGGTACAACTTCAGATCCTCTGTACCCTTCT  Raphanus raphanistrum subsp. maritimus
FD563081       <-- CATCTTTATCCTCGTACGTTGGTACAACTTCAGATCCTCTGTACCCTTCT  Raphanus sativus var. oleiformis
FD550956       <-- CATCTTTATCCTCGTACGTTGGTACAACTTCAGATCCTCTGTACCCTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD569202       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX905757       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV546596       --> CATCTTTATCCTCGTACGTTGGTACAACTTCAAATCCTCTGTACCCTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900965       --> CATCTTTATCCTCGTACGTTGGTACAACTTCAGATCCTCTGTACTCTTCT  Raphanus sativus cv Early Scarlet Globe
FD566812       --> CATCTTTATCCTCGTACGTTGGTACAACTTCAAATCCTCTGTACCCTTCT  Raphanus sativus var. oleiformis
EY895216       --> CATCTTTATCCTCGTACGTTGGTACAACTTCAGATCCTCTGTACCCTTCT  Raphanus raphanistrum subsp. maritimus
EY927829       --> CATCTTTATCCTCGTACGTTGGTACAACTTCAGATCCTCTGTACCCTTCT  Raphanus sativus var. oleiformis
FD546845       --> CATCTTTATCCTCGTACGTTGGTACAACTTCAGATCCTCTGTACCCTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD573451       --> CATCTTTATCCTCGTACGTTGGTACAACTTCAGATCCTCTGTACCCTTCT  Raphanus sativus cv Early Scarlet Globe
EV541592       --> CATCTTTATCCTCGTACGTTGGTACAACTTCAGATCCTTCGTACCCTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY911206       --> CATCTTTATCCTCGTACGTTGGTACAACTTCAGATCCTTCGTACCCTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               401    -    451
UN19990        --> CTTTCGTTGTATTCACCTATTGTGATCTTGAACATGTTCTCTAACTCCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551514       <-- CTTTCGTT----GTACCTATTGTGATCTTGAACATGTTCTCTAACTCCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY932012       <-- CTTTCGTTGTATTCACCTATTGTGATCTTGAACATGTTCTCTAACTCCCT  Raphanus sativus var. oleiformis
EY915343       <-- CTTTCGTTGTATTCACCTATTGTGAACTTGAACATGTTCTCTAACTCCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537344       <-- CTTTCGTTGTATTCACCTATTGTGAACTTGAACATGTTCTCTAACTCCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897152       <-- CTTTCGTTGTATTCACCTATTGTGATCTCGAACATGTTCTCTAACTCCCT  Raphanus sativus cv Early Scarlet Globe
EY899449       <-- CTTTCGTTGTATTCACCTATTGTGATCTCGAACATGTTCCCTAACTCCCT  Raphanus raphanistrum subsp. maritimus
FD563081       <-- CTTTCGTTGTATTCACCTATTGTGATCTCGAACATGTTCTCTAACTCCCT  Raphanus sativus var. oleiformis
FD550956       <-- CTTTCGTTGTATTCACCTATTGTGATCTTGAACATGTTCTCTAACTCCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD569202       <-- ...................TTGTGATCTCGAACATGTTCTCTAACTCCCT  Raphanus sativus cv Early Scarlet Globe
EX905757       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV546596       --> CTTTCGTTGTA----CCTATTGTGATCTTGAACATGTTCTCTAACTCCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900965       --> CTTTCGTTGTATTCACCTATTGTGATCTCGAACATGTTCTCTAACTCCCT  Raphanus sativus cv Early Scarlet Globe
FD566812       --> CTTTCGTTGTATTCACCTATTGTGATCTCGAACATGTTCTCTAACTCCCT  Raphanus sativus var. oleiformis
EY895216       --> CTTTCGTTGTATTCACCTATTGTGATCTCGAACATGTTCCCTAACTCCCT  Raphanus raphanistrum subsp. maritimus
EY927829       --> CTTTCGTTGTATTCACCTATTGTGATCTTGAACATGTTCTCTAACTCCCT  Raphanus sativus var. oleiformis
FD546845       --> CTTTCGTTGTATTCACCTATTGTGATCTTGAACATGTTCTCTAACTCCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD573451       --> CTTTCGTTGTATTCACCTATTGTGATCTCGAACATGTTCTCTAACTCCCT  Raphanus sativus cv Early Scarlet Globe
EV541592       --> CTTTCGTTGTATTCACCTATTGTGAACTTGAACATGTTCTCTAACTCCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY911206       --> CTTTCGTTGTATTCACCTATTGTGAACTTGAACATGTTCTCTAACTCCCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN19990        --> GAGAAGCTCTGGATAGTTTTTATATGTTTTGAGATCGATTTTACGTAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551514       <-- GAGAAGCTCTGGATAGTTTTTATATGTTTTGAGATCGATTTTACGTAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY932012       <-- GAGAAGCTCTGGATAGTTTTTATATGTTTTGAGATCGATTTTACGTAGGT  Raphanus sativus var. oleiformis
EY915343       <-- GAGAAGCTCTGGGTAGTTTTTATATGTTTTGATATCGATTTTACGTAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537344       <-- GAGAAGCTCTGGATAGTTTTTATATGTTTTGATATCGATTTTACGTAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897152       <-- GAGAAGCTCTGGATAGTTTTTATATGTTTTGAGATCGATTTTACGTAGGT  Raphanus sativus cv Early Scarlet Globe
EY899449       <-- GAGAAGCTCTGGATAGTTTTTATATGTTTTGAGATCGATTTTACGTAGGT  Raphanus raphanistrum subsp. maritimus
FD563081       <-- GAGAAGCTCTGGATAGTTTTTATATGTTTTGAGATCGATTTTACGTAGGT  Raphanus sativus var. oleiformis
FD550956       <-- GAGAAGCTCTGGATAGTTTTTATATGTTTTGAGATCGATTTTACGTAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD569202       <-- GAGAAGCTCTGGATAGTTTTTATATGTTTTGAGATCGATTTTACGTAGGT  Raphanus sativus cv Early Scarlet Globe
EX905757       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV546596       --> GAAAAGCTCTGGATAGTTTTTATATGTTTTGAGATCGATTTTACGTAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900965       --> GAGAAGCTCTGGATAGTTTTTATATGTTTTGAGATCGATTTTACGTAGGT  Raphanus sativus cv Early Scarlet Globe
FD566812       --> GAAAAGCTCTGGATAGTTTTTATATGTTTTGAGATCGATTTTACGTAGGT  Raphanus sativus var. oleiformis
EY895216       --> GAGAAGCTCTGGATAGTTTTTATATGTTTTGAGATCGATTTTACGTAGGT  Raphanus raphanistrum subsp. maritimus
EY927829       --> GAGAAGCTCTGGATAGTTTTTATATGTTTTGAGATCGATTTTACGTAGGT  Raphanus sativus var. oleiformis
FD546845       --> GAGAAGCTCTGGATAGTTTTTATATGTTTTGAGATCGATTTTACGTAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD573451       --> GAGAAGCTCTGGATAGTTTTTATATGTTTTGAGATCGATTTTACGTAGGT  Raphanus sativus cv Early Scarlet Globe
EV541592       --> GAGAAGCTCTGGATAGTTTTTATATGTTTTGATATCGATTTTACGTAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY911206       --> GAGAAGCTCTGGGTAGTTTTTATATGTTTTGATATCGATTTTACGTAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN19990        --> ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCACACTGTTGTTGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551514       <-- ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCACACTGTTGTTGTTC
EY932012       <-- ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCATACTGTTGTTGTTC
EY915343       <-- ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCACACTGTTGTTGTTC
EV537344       <-- ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCACACTGTTGTTGTTC
EX897152       <-- ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCACACTGTTGTTGTTC
EY899449       <-- ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCACACTGTTGTTGTTC
FD563081       <-- ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCACACTGTTGTTGTTC
FD550956       <-- ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCACACTGTTGTTGTTC
FD569202       <-- ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCACACTGTTGTTGTTC
EX905757       <-- ..GGAGCTCCGTCCATACTCACTTTCACATAGCTCACACTGTTGTTGTTC
EV546596       --> ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCACACTGTTGTTGTTC
EX900965       --> ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCACACTGTTGTTGTTC
FD566812       --> ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCACACTGTTGTTGTTC
EY895216       --> ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCACACTGTTGTTGTTC
EY927829       --> ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCATACTGTTGTTGTTC
FD546845       --> ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCACACTGTTGTTGTTC
FD573451       --> ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCACACTGTTGTTGTTC
EV541592       --> ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCACACTGTTGTTGTTC
EY911206       --> ATGGAGCTCCGTCCATACTCACTTTCACATAGCTCACACTGTTGTTGTTC

               551    -    601
UN19990        --> TTACGGTAAGATCTCACCGGAGGCCAACCAACGATTTGAGTTTTCGTAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551514       <-- TTACGGTAAGATCTCACCGGAGGCCAACCAACGATTTGAGTTTTCGTAGG
EY932012       <-- TTACGGTAAGATCTCACCGGAGGCCAACCAACGATTTGAGTTTTCGTAGG
EY915343       <-- TTACGGTAAGATCTCACCGGAGGCCAACCAACGATTTGAGTTTTCGTAGG
EV537344       <-- TTACGGTAAGATCTCACCGGAGGCCAACCAACGATTTGAGTTTTCGTAGG
EX897152       <-- TTACGGTAAGATCTCACCGGAGGCCAACCAACGATTTGAGTTTTCGTAGG
EY899449       <-- TTACGGTAAGATCTCACCGGAGGCCAACCAACGATTTGAGTTTTCGTAGG
FD563081       <-- TTACGGTAAGATCTCACCGGAGGCCAACCAACGATTTGAGTTTTCGTAGG
FD550956       <-- TTACGGTAAGATCTCACCGGAGGCCAACCAACGATTTGAGTTTTCGTAGG
FD569202       <-- TTACGGTAAGATCTCACCGGAGGCCAACCAACGATTTGAGTTTTCGTAGG
EX905757       <-- TTACGGTAAGATCTCACCGGAGGCCAACCAACGATTTGAGTTTTCGTAGG
EV546596       --> TTACGGTAAGATCTCACCGGAGGCCAACCAACGATTTGAGTTTTCGTAGG
EX900965       --> TTACGGTAAGATCTCACCGGAGGCCAACCAACGATTTGAGTTTTCGTAGG
FD566812       --> ..................................................
EY895216       --> TTACGGTAAGATCTCACCGGAGGCCAACCAACGATTTGAGTTTTCGTAGG
EY927829       --> TTACGGTAAGATCTCACCGGAGGCCAACCAACGATTTGAGTTTTCGTAGG
FD546845       --> TTACGGTAAGATCTCACCGGAGGCCAACCAACGATTTGAGTTTTCGTAGG
FD573451       --> TTACGGTAAGATCTCACCGGAGGCCAACCAACGATTTGAGTTTTCGTAGG
EV541592       --> TTACGGTAAGATCTCACCGGAGGCCAACCAACGATTTGAGTTTTCGTAGG
EY911206       --> TTACGGTAAGATCTCACCG...............................

               601    -    651
UN19990        --> AGGTGTAGATTCTTCCTCGTTATCGCTTTGATATTGACGCTTGATGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551514       <-- AGGTGTTGATTCTTCCTCGTTATCGCTTTGATATTGACGCTTGATGCTTC
EY932012       <-- AGGTGTAGATTCTTCCTCGTTATCGCTTTGATATTGACGCTTGATGCTTC
EY915343       <-- AGGTGTAGATTCTTCCTCGTTATCGCTTTGATATTGACGCTTGATGCTTC
EV537344       <-- AGGTGTAGATTCTTCCTCGTTATCGCTTTGATATTGACGCTTGATGCTTC
EX897152       <-- AGGTGTAGATTCTTCCTCGTTATCGCTTTGATATTGACGCGTGATGCTTC
EY899449       <-- AGGTGTAGATTCTTCCTCGTTATCGCTTTGATATTGACGCTTGATGCTTC
FD563081       <-- AGGTGTAGATTCTTCCTCGTTATCGCTTTGATATTGACGCTTGATGCTTC
FD550956       <-- AGGTGTTGATTCTTCCTCGTTATCGCTTTGATATTGACGCTTGATGCTTC
FD569202       <-- AGGTGTAGATTCTTCCTCGTTATCGCTTTGATATT--GGCTTGATGCTTC
EX905757       <-- AGGTGTAGATTCTTCCTCGTTATCGCTTTGATATTGACGCTTGATGCTTC
EV546596       --> AGGTGTTGATTCTTCCTCGTTATCGCTTTGATATTGACGCTTGATGCTTC
EX900965       --> AGGTGTAGATTCTTCCTCGTTATCGCTTTGATATTGACGCGTGATGCTTC
FD566812       --> ..................................................
EY895216       --> AGGTGTAGATTCTTCCTCGTTATCGCTTTGATATTGACGCTTGATGCTTC
EY927829       --> AGGTGTAGATTCTTCCTCGTTATCGCTTTGATATTGACGCTTGATGCTTC
FD546845       --> AGGTGTTGATTCTTCCTCGTTATCGCTTTGATATTGACGCTTGATGCTTC
FD573451       --> AGGTGTAGATTCTTCCTCGTTATCGCTTTGATATTG--GCTTGATGCTTC
EV541592       --> AGGTGTAGATTCTTCCTCGTTATCGCTTTGATATTGACGCTTGATGCTTC
EY911206       --> ..................................................

               651    -    701
UN19990        --> TAACACAAGAAACCTCTTGTTCTTCCTTAACTTGCTCTGTTCCAGGTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551514       <-- TAACACAAGAAACCTCTTGTTCTTCCTTAACTTGCTCTGTTCCAGGTAAT
EY932012       <-- TAACACAAGAAACCTCTTGTTCTTCCTTAACTTGCTCTGTTCCAGGTAAT
EY915343       <-- TAACACAAGAAACCTCTTGTTCTTCCTTAACTTGCTCTGTTCCAGGTAAT
EV537344       <-- TAACACAAGAAACCTCTTGTTCTTCCTTAACTTGCTCTGTTCCAGGTAAT
EX897152       <-- TAACACAAGAAACCTCTTGTTCTTCCTTAACTTGCTCTGTTCCAGGTAAT
EY899449       <-- TAACACAAGAAACATCTTGTTCTTCCTTAACTTGCTCTGTTCCAGGTAAT
FD563081       <-- TAACACAAGAAACCTCTTGTTCTTCCTTAACTTGCTCTGTTCCAGGTAAT
FD550956       <-- TAACACAAGAAACCTCTTGTTCTTCCTTAACTTGCTCTGTTCCAGGTAAT
FD569202       <-- TAACACAAGAAACCTCTTGTTCTTCCTTAACTTGCTCTGTTCCAGGTAAT
EX905757       <-- TAACACAAGAAACCTCTTGTTCTTCCTTAACTTGCTCTGTTCCAGGTAAT
EV546596       --> TAACACAAGAAACCTCTTGTTCTTCCTTAACTTGCTCTGTTCCAGG....
EX900965       --> TAACACAAGAAACCTCTTGTTCTTCCTTAACTTGCTCTGTTCCAGGTAAT
FD566812       --> ..................................................
EY895216       --> TAACACAAGAAACATCTTGTTCTTCCTTAACTTGCTCTGTTCCAGGTAAT
EY927829       --> TAACACAAGAAACCTCTTGTTCTTCCTTAACTTGCTCTGTTCCAGGTAAT
FD546845       --> TAACACAAGAAACCTCTTGTTCTTCCTTAACTTGCTCTGTTCCAGGTAAT
FD573451       --> TAACACAAGAAACCTCTTGTTCTTCCTTAACTTGCTCTGTTCCAGGTAAT
EV541592       --> TAACACAAGAAACCTCTTGTTCTTCCTTAACTTGCTCTGTTCCAGGTAAT
EY911206       --> ..................................................

               701    -    751
UN19990        --> CCAAGACGAAGCTCTGTGTCCTTAAGGTTAATCTCATTGACTTTCTCGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551514       <-- CCAAGACGAAGCTCTGTGTCCTTAAGGTTAATCTCATTGACTTTCTCGTA
EY932012       <-- CCAAGACGAAGCTCTGTGTCCTTAAGGTTAATCTCATTGACTTTCTCGTA
EY915343       <-- CCAAGACGAAGCTCTGTGTCCTTAAGGTTAATCTCATTGACTTTCTCGTA
EV537344       <-- CCAAGACGAAGCTCTGTGTCCTTAAGGTTAATCTCATTGACTTTCTCGTA
EX897152       <-- CCAAGACGAAGCTCTGTGTCCTTAAGGTTAATCTCATTGACTTTCTCGTA
EY899449       <-- CCAAGACGAAGCTCTGTGTCCTTAAGGTTAATCTCATTGACTTTCTCGTA
FD563081       <-- CCAAGACGAAGCTCTGTGTCCTTAAGGTTAATCTCATTGACTTTCTCGTA
FD550956       <-- CCAAGACGAAGCTCTGTGTCCTTAAGGTTA-TCTCATTGACTTTCTCGTA
FD569202       <-- CCAAGACGAAGCTCTGTGTCCTTAAGGTTAATCTCATTGACTTTCTCGTA
EX905757       <-- CCAAGACGAAGCTCTGTGTCCTTAAGGTTAATCTCATTGACTTTCTCGTA
EV546596       --> ..................................................
EX900965       --> CCAAGACGAAGCTCTGTG................................
FD566812       --> ..................................................
EY895216       --> CCAAGACGAAGCTCTGTGT...............................
EY927829       --> CCAAGACGAAGCTCTGTGTCCTTAAGGTTAATCTCATTGACTTTCTCGTA
FD546845       --> CCAAGACGAAGCTCTGTGTCCTTAAGGTTA-TCTCATTGACTTTCTCGTA
FD573451       --> CCAAGACGAAGCTCTGTGTCCTTAAGGTTAATCTCATTGACTTTCTCGTA
EV541592       --> CCAAGACGAAGCTCTGTGTCCTTAAGGTTAATCTCATTGACTTTCTCGTA
EY911206       --> ..................................................

               751    -    801
UN19990        --> CGCCATTGTTTTTCGAAATCAAGATTTCTTTCTCTATATGCTTTTGTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551514       <-- CGCCATTGTTTTTCaaa.................................
EY932012       <-- CGCCATTGTTTTTCGAAATCAAGATTTCTTTCTCTATATGCTTTTGTGTA
EY915343       <-- CGCCATTGTTTTTCGAAATCAAGATTTCTTTCTCTATATGCTTTTGTGTA
EV537344       <-- CGCCATTGTTTTTCGAAATCAAGATTTCTTTCTCTATATGCTTTTGTGTA
EX897152       <-- CGCCATTGTTTTTCGAAATCAAGATTTCTTTCTCTATATGCTTTTGCGTA
EY899449       <-- CGCCATTGTTTTTCAAAATCAAGATTTCTTTCTCTATATGCTTTTGTGTA
FD563081       <-- CGCCATTGTTTTTCGAAATCAAGATTTCTTTCTCTATATGCTTTTGTGTA
FD550956       <-- CGCCATTGTTTTTCAAAATCAAGATTTCTTTCTCTATATGCTTTTGTGTA
FD569202       <-- CGCCATCGTT----TTTTTCAAGATTTCTTTCTCTATATGCTTTTGTGTA
EX905757       <-- CGCCATTGTTTTTCGAAATCAAGATTTCTTTCTCTATATGCTTTTGTGTA
EV546596       --> ..................................................
EX900965       --> ..................................................
FD566812       --> ..................................................
EY895216       --> ..................................................
EY927829       --> CGCCATTGTTTTTCGAAATCAAGATTTCTTTCTCTATATGCTTTTGTGTA
FD546845       --> CGCCATTGTTTTTCAAAATCAAGATTTCTTTCTCTATATGCTTTTGTGTA
FD573451       --> CGCCATCGTTTTT----TTCAAGATTTCTTTCTCTATATGCTTTTGTGTA
EV541592       --> CGCCATTGTTTTTCGAAATCAAGATTTCTTTCTCTATATGCTTTTGTGTA
EY911206       --> ..................................................

               801    -    851
UN19990        --> ATATCCAAGGCAGAATCCTTCTCTTGTTCTTGCT-ATTGTTATTGTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551514       <-- ..................................................
EY932012       <-- ATATCCAAGGCAGAATCCTTCTCTTGTTCTTGCT-ATTGTTATTGTTCTT
EY915343       <-- ATATCCAAGGCAGAATCCTTCTCTTGTTCTTGC.................
EV537344       <-- ATATCCAAGGCAGAATCCTTCTCTTGTTCTTGCT-ATTGTTATTGTTCTT
EX897152       <-- ATATCCAAGGCAGAATCCTTCTCTTGTTCTTGCT-ATTGTTATTGTTCTT
EY899449       <-- ATATCCAAGGCAGAATCCTTCTCTTGTTCTTGCT-ATTGTTATTGTTCTT
FD563081       <-- ATATCCAAGGCAGAATCCTTCTCTTGTTCTTGCT-ATTGTTATTGTTCTT
FD550956       <-- ATATCCAAGGCAGAATCCTTCTCTTGTTCTTGCTTATTGTTATTGTTCTT
FD569202       <-- ATATCCAAGGCAGAATCCTTCTCTTGTTCTTGC.................
EX905757       <-- ATATCCAAGGCAGAATCCTTCTCTTGTTCTTGCT-ATTGTTATTGTTCTT
EV546596       --> ..................................................
EX900965       --> ..................................................
FD566812       --> ..................................................
EY895216       --> ..................................................
EY927829       --> ATATC.............................................
FD546845       --> ..................................................
FD573451       --> ATATC.............................................
EV541592       --> ATATCCAAGGCAGAATCCTTCTCTTGTTCTTGCT-ATTGTTATTGTTCTT
EY911206       --> ..................................................

               851    -    901
UN19990        --> GTTGGTGAGTTTGGTTGATGAATGATGATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551514       <-- ...............................
EY932012       <-- GTTGGTAAGTTTGGTTGATGAATGATcc...
EY915343       <-- ...............................
EV537344       <-- GTTGGTGAGTTTGGTTGATGAATGATGATCC
EX897152       <-- GTTGGTGAGTTTGGTTGATGAATGATGATCC
EY899449       <-- GTTGGTGAGTTTGGTTGATGAATGATGATCC
FD563081       <-- GTTGGTGAGTTTGGTTGATGAATGATGATCC
FD550956       <-- GTTGGTGAGTTTGGTTGATGAATGATcc...
FD569202       <-- ...............................
EX905757       <-- GTTGGTGAGTTTGGTTGATGAATGATGATCC
EV546596       --> ...............................
EX900965       --> ...............................
FD566812       --> ...............................
EY895216       --> ...............................
EY927829       --> ...............................
FD546845       --> ...............................
FD573451       --> ...............................
EV541592       --> GTTGGTGAGTTTGGTTGATGAATGATGATCC
EY911206       --> ...............................