1      -     51
UN20017        --> GGGTCCCCAACCTATCATCGTCTCCTCTCTCTCTCGCTCGCTATTGAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896269       <-- ...............CATCGTCTCCTCTCTCTCTCGCTCGCTATTGAAAC
FD567440       <-- ..................................................
EV573558       <-- ..................................................
EY900808       --> GGGTCCCCAACCTATCATCGTCTCCTCTCTCTCTCGCTCGCTATTGAAAC
EV568941       --> ...........ggATCATCGTCTCCTCTCTCTCTCGCTCGCTATTGAAAC
FD563787       --> ..................................................
FY435417       --> ..................................................

               51     -    101
UN20017        --> CCTAAAAATCAAAGCTTGAATTTCAGATCTTTAACAGCTGTCTCCTCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896269       <-- CCTAAAAATCAAAGCTTGAATTTCAGATCTTTAACAGCTGTCTCCTCGAG
FD567440       <-- ......................ggAGATCTTTAACAGCTGTCTCCTCGAG
EV573558       <-- ..................................................
EY900808       --> CCTAAAAATCAAAGCTTGAATTTCAGATCTTTAACAGCTGTCTCCTCGAG
EV568941       --> CCTAAAAATCAAAGCTTGAATTTCACATCTTTAACAGCCGTCTCCTCGAG
FD563787       --> ......................ggAGATCTTTAACAGCTGTCTCCTCGAG
FY435417       --> ..................................................

               101    -    151
UN20017        --> GAGACGACTACTATGAGCAGCAGAGATCATCATCATCATC---CACCCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896269       <-- GAGACGACTACTATGAGCAGCAGAGATCATCATCATCATC---CACCCGA
FD567440       <-- GAGACGACTACTATGAGCAGCAGAGATCATCATCATCATCATCCACCCGA
EV573558       <-- ...........TATGAGCAGCAGAGATCATCATCATCATC---CACCCGA
EY900808       --> GAGACGACTACTATGAGCAGCAGAGATCATCATCATCATC---CACCCGA
EV568941       --> GAGACGACTACTATGAGCAGCAGAGATCATCATCATCATC---CACCCGA
FD563787       --> GAGACGACTACTATGAGCAGCAGAGATCATCATCATCATCATCCACCCGA
FY435417       --> ..............................................CCGA

               151    -    201
UN20017        --> GCCTCTTGATTTCTTCATCTGGACTGTTGAGGATGTTGGATCTTGGCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896269       <-- GCCTCTTGATTTCTTCATCTGGACTGTTGAGGATGTTGGATCTTGGCTTG
FD567440       <-- GCCTCTTGATTTCTTCATCTGGACTGTTGAGGATGTTGGATCTTGGCTTG
EV573558       <-- GCCTCTTGATTTCTTCATCTGAACTGTTGAGGATGTTGGATCTTGGCTTG
EY900808       --> GCCTCTTGATTTCTTCATCTGGACTGTTGAGGATGTTGGATCTTGGCTTG
EV568941       --> GCCTCTTGATTTCTTCATCTGAACTGTTGAGGATGTTGGATCTTGGCTTG
FD563787       --> GCCTCTTGATTTCTTCATCTGGACTGTTGAGGATGTTGGATCTTGGCTTG
FY435417       --> GCCTCTTGATTTCTTCATCTGGACTGTTGAGGATGTTGGATCTTGGCTTG

               201    -    251
UN20017        --> AGGAAATCAACCTTGGGAGCTACCGCTTGATTTTCAAAGAAAACGGCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896269       <-- AGGAAATCAACCTTGGGAGCTACCGCTTGATTTTCAAAGAAAACGGCGTC
FD567440       <-- AGGAAATCAACCTTGGGAGCTACCGCTTGATTTTCAAAGAAAACGGCGTC
EV573558       <-- AGGAAATCAACCTTGGGAGCTACCGCTTGATTTTCAAAGAAAACGGCGTC
EY900808       --> AGGAAATCAACCTTGGGAGCTACCGCTTGATTTTCAAAGAAAACGGCGTC
EV568941       --> AGGAAATCAACCTTGGGAGCTACCGCTTGATTTTCAAAGAAAACGGCGTC
FD563787       --> AGGAAATCAACCTTGGGAGCTACCGCTTGATTTTCAAAGAAAACGGCGTC
FY435417       --> AGGAAATCAACCTTGGGAGCTACCGCTTGATTTTCAAAGAAAACGGCGTC

               251    -    301
UN20017        --> AATGGAGAATATCTAGAAAGCATGTCTGTGTTTACAACCGAACAGATCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896269       <-- AATGGAGAATATCTAGAAAGCATGTCTGTGTTTACAACCGAACAGATCCT
FD567440       <-- AATGGAGAATATCTAGAAAGCATGTCTGTGTTTACAACCGAACAGATCCT
EV573558       <-- AATGGAGAATATCTAGAAAGCATGTCTGTGTTTACAACCGAACAGATCCT
EY900808       --> AATGGAGAATATCTAGAAAGCATGTCTGTGTTTACAACCGAACAGATCCT
EV568941       --> AATGGAGAATATCTAGAAAGCATGTCTGTGTTTACAACCGAACAGATCCT
FD563787       --> AATGGAGAATATCTAGAAAGCATGTCTGTGTTTACAACCGAACAGATCCT
FY435417       --> AATGGAGAATATCTAGAAAGCATGTCTGTGTTTACAACCGAACAGATCCT

               301    -    351
UN20017        --> TCATTTCATAAGGAGGCATCACATGAAATGGGGAGACTTCATCACTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896269       <-- TCACTTCATAAGGAGGCATCACATGAAATGGGGAGACTTCATCACTCTCT  Raphanus raphanistrum subsp. maritimus
FD567440       <-- TCATTTCATAAGGAGGCATCACATGAAATGGGGAGACTTCATCACCCTCT  Raphanus sativus var. oleiformis
EV573558       <-- TCATTTCATAAGGAGGCATCACATGAAATGGGGAGACTTCATCACTCTCT  Raphanus raphanistrum subsp. landra
EY900808       --> TCACTTCATAAGGAGGCATCACATGAAATGGGGAGACTTCATCACTCTCT  Raphanus raphanistrum subsp. maritimus
EV568941       --> TCATTTCATAAGGAGGCATCACATGAAATGGGGAGACTTCATCACTCTCT  Raphanus raphanistrum subsp. landra
FD563787       --> TCATTTCATAAGGAGGCATCACATGAAATGGGGAGACTTCATCACCCTCT  Raphanus sativus var. oleiformis
FY435417       --> TCATTTCATAAGGAGGCATCACATGAAATGGGGAGACTTCATCACCCTCT  Raphanus sativus cv GSK3-1

               351    -    401
UN20017        --> GTAAAGAACTCAGAAGGATCAAAGTGGCTTGCTTGAAAGGCGAGCAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896269       <-- GTAAAGAACTCAGAAGGATCAAAGTGGCTTGCTTGAAAGGCGAGCAGAGA  Raphanus raphanistrum subsp. maritimus
FD567440       <-- GCAAAGAACTCAGAAGGATCAAAGTGGCTTGCTTGAAAGGCGAGCAGAGA  Raphanus sativus var. oleiformis
EV573558       <-- GTAAAGAACTCCGAAGGATCAAAGTGGCTTGCTTGAAAGGCGAGCAGAGA  Raphanus raphanistrum subsp. landra
EY900808       --> GTAAAGAACTCAGAAGGATCAAAGTGGCTTGCTTGAAAGGCGAGCAGAGA  Raphanus raphanistrum subsp. maritimus
EV568941       --> GTAAAGAACTCCGAAGGATCAAAGTGGCTTGCTTGAAAGGCGAGCAGAGA  Raphanus raphanistrum subsp. landra
FD563787       --> GCAAAGAACTCAGAAGGATCAAAGTGGCTTGCTTGAAAGGCGAGCAGAGA  Raphanus sativus var. oleiformis
FY435417       --> GCAAAGAACTCCGAAGGATCAAAGTGGCTTGCTTGAAAGGCGAGCAGAGA  Raphanus sativus cv GSK3-1

               401    -    451
UN20017        --> GTTCGAAGGCCATGGTGGGCACCGTCTTGTCTCTCGGTAGTCTTTGTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896269       <-- GTTCGAAGGCCATGGTGGGCACCGTCTTGTCTCTCGGTAGTCTTTGTTAA
FD567440       <-- GTTCGAAGGCCATGGTGGGCACCGTCTTGTCTCTCTGTAGTCTTTGTTAA
EV573558       <-- GTTCGAAGGCCGTGGTGGGCACCGTCTTGTCTCTCGGTAGTCTTTGTGAA
EY900808       --> GTTCGAAGGCCATGGTGGGCACCGTCTTGTCTCTCGGTAGTCTTTGTTAA
EV568941       --> GTTCGAAGGCCGTGGTGGGCACCGTCTTGTCTCTCGGTAGTCTTTGTGAA
FD563787       --> GTTCGAAGGCCATGGTGGGCACCGTCTTGTCTCTCTGTAGTCTTTGTTAA
FY435417       --> GTTCGAAGGCCATGGTGGGCACCGTCTTGTCTCTCGGTAGTCTTTGTTAA

               451    -    501
UN20017        --> GGCGGCTAAGCGCAATCGACAGTCTCGAGTTGTATCTCTAAAGCTTGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896269       <-- GGCGGCTAAGCGCAATCGACAGTCTCGAGTTGTATCTCTAAAGCTTGAAT  Raphanus raphanistrum subsp. maritimus
FD567440       <-- GGCGGCTAAGCGCAACCGACAGTCTCGAGTTGTATCTCTAAAGCTTGAAT  Raphanus sativus var. oleiformis
EV573558       <-- GGCAGCCAAGCGCAATCGACAGTCTCGAGTTGTATCTCTAAAGCTTGAAT  Raphanus raphanistrum subsp. landra
EY900808       --> GGCGGCTAAGCGCAATCGACAGTCTCGAGTTGTATCTCTAAAGCTTGAAT  Raphanus raphanistrum subsp. maritimus
EV568941       --> GGCAGCCAAGCGCAATCGACAGTCTCGAGTTGTATCTCTAAAGCTTGAAT  Raphanus raphanistrum subsp. landra
FD563787       --> GGCGGCTAAGCGCAACCGACAGTCTCGAGTTGTATCTCTAAAGCTTGAAT  Raphanus sativus var. oleiformis
FY435417       --> GGCCGCTAAGCGCAACCGACAGTCTCGAGTTGTATCTCTAAAGCTTGAAT  Raphanus sativus cv GSK3-1

               501    -    551
UN20017        --> CTTGACAATTACACGTTGGCTCTCTCTTTATGTACCTACTTGTCTCTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896269       <-- CTTGACAATTACACGTTGGCTCTCTCTTTATGTACCTACTTGTCTCTCTT
FD567440       <-- CTTGACAATTACACGTTGGCTCTCTCTTTATGTACCTACTTGTCTCTCTT
EV573558       <-- CTTGACAATTACACGTTGGCTCTCTCTTTATGTACCTACTTGTCTCTCTT
EY900808       --> CTTGACAATTACACGTTGGCTCTCTCTTTATGTACCTACTTGTCTCTCTT
EV568941       --> CTTGACAATTACACGTTGGCTCTCTCTTTATGTACCTACTTGTCTCTCTT
FD563787       --> CTTGACAATTACACGTTGGCTCTCTCTTTATGTACCTACTTGTCTCTCTT
FY435417       --> CTTGACAATTACACGTTGGCTCTCTCTTTATGTACCTACTTGTCTCTCTT

               551    -    601
UN20017        --> CTCATCCCTTTCTTTTCCTTTTT--TTT---TTTGGGTTGAGTTTGTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896269       <-- CTCATCCCTTTCTTTTCCTTTTT--TGT---TTTGGGTTGAGTTTGTTTG
FD567440       <-- CTCATCCCTTTCTTTTCCTTTTTCTTTT---TTTGGGTTGAGTTTGTTTG
EV573558       <-- CTCATCCCTTTCTTTTCCTTTTT--CTT---TT-GGGTTGAGTTTGTTTG
EY900808       --> CTCATCCCTTTCTTTTCCTTTTT--TGT---TTTGGGTTGAGTTTGTTTG
EV568941       --> CTCATCCCTTTCTTTTCCTTTTT--CTT---TT-GGGTTGAGTTTGTTTG
FD563787       --> CTCATCCCTTTCTTTTCCTTTTTCTTTT---TTTGGGTTGAGTTTGTTTG
FY435417       --> CTCATCCCTTTCTTTTCCTTTTT--TTTCTTTTTGGGTTGAGTTTGTata

               601    -    651
UN20017        --> TAGAGATAAAAGCTATATATGCACTATGAAAAAAA--CAAACTGGAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896269       <-- TAGAGATAAAAGCTATATATGCACTATGAAAAAAAAACAAACTGGAGCCA
FD567440       <-- TAGAGATAAAAGCTATATATGCACTATGAAAAAAA--CAAACTGGAGCCA
EV573558       <-- TAGAGATAAA-GCTATATATGCACTATGAAAAAAA--CAAATTGGAGCCA
EY900808       --> TAGAGATAAAAGCTATATATGCACTATGAAAAAAA-ACAAACTGGAGCCA
EV568941       --> TAGAGATAAA-GCTATATATGCACTATGAAAAAAA--CAAATTGGAGCCA
FD563787       --> TAGAGATAAAAGCTATATATGCACTATGAAAAAAA--CAAACTGGAGCCA
FY435417       --> atacg.............................................

               651    -    701
UN20017        --> AAATGCTGTTTGGCTTGTTAAAATCTTGCAAGGAGGGAAAAAAT--ATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896269       <-- AAATGCTGTTTGGCTTGTTAAAATCTTGCAAGGAGGGA............
FD567440       <-- AAATGCTGTTTGGCTTGTTAAAATCTTGCAAGGAGGGAAAAAAT--ATAG
EV573558       <-- AAAAGCTGTTTGGCTTGTTAAAATCTTGCAAGAAGGGAAAAAATTTATAG
EY900808       --> AAATGCTGTTTGGCTTGTTAAA-TCTTGCAAGGAGGGAA...........
EV568941       --> AAAAGCTGTTTGGCTTGTTAAAATCTTGCAAGAAGGG.............
FD563787       --> AAATGCTGTTTGGCTTGTTAAAATCTTGCAAGGAGGGAAAAAAT--ATAG
FY435417       --> ..................................................

               701    -    751
UN20017        --> TTTTCGT
                   ~~~~~~~
EY896269       <-- .......
FD567440       <-- TTTTCt.
EV573558       <-- TTTTCGT
EY900808       --> .......
EV568941       --> .......
FD563787       --> TTTTCt.
FY435417       --> .......