1      -     51
UN20025        --> GGATAAACTGCAACCATACAGATAGATTAGGGAGAGAGCAGTGAGCAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903066       <-- .............................GGGAGAGAGCAGTGAGCAATC
FD968743       <-- ...............................ggGAGAGCGGTGAGCAATC
FD529932       <-- ........................................ggGAGCAATC
FD945589       <-- ............................................ggAATC
FD974844       <-- ............................................ggAATC
FD970210       --> GGATAAACTGCAACCATACAGATAGATTAGAGAGAGAGCAGTGAGCAATC
EY907025       --> .............................GGGAGAGAGCAGTGAGCAATC
EW714363       --> ....................................gggAGTGAGCAATC
EX749889       --> ......................................ggGTGAGCA-TC
FD533867       --> ........................................ggGAGCAATC
FD950023       --> ............................................ggAATC
FD978645       --> ............................................ggAATC
EX762272       --> .................................................g

               51     -    101
UN20025        --> GCAGGGAGAAAATGGAGGAAGCAAAGGGACCTGTGAAGCACGTTCTGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903066       <-- GCAGGGAGAAAATGGAGGAAGCAAAGGGACCTGTGAAGCACGTTCTGCTT
FD968743       <-- GCAGGGAGAAAATGGAGGAAGCAAAGGGACCTGTGAAGCACGTTCTGCTT
FD529932       <-- GCAGGGAGAAAATGGAGGAAGCAAAGGGACCTGTGAAGCACGTTCTGCTT
FD945589       <-- GCAGGGAGAAAATGGAGGAAGCAAAGGGGCCTGTGAAGCACGTTCTGCTT
FD974844       <-- GCAGGGAGAAAATGGAGGAAGCAAAGGGACCTGTGAAGCACGTTCTGCTT
FD970210       --> GCAGGGAGAAAATGGAGGAAGCAAAGGGACCTGTGAAGCACGTTCTGCTT
EY907025       --> GCAGGGAGAAAATGGAGGAAGCAAAGGGACCTGTGAAGCACGTTCTGCTT
EW714363       --> GCAGGGAGAAAATGGAGGAAGCAAAGGGACCTGTGAAGCACGTTCTGCTT
EX749889       --> GCAGGGAGAAAATGGAGGAAGCAAAGGGACCTGTGAAGCACGTTCTGCTT
FD533867       --> GCAGGGAGAAAATGGAGGAAGCAAAGGGACCTGTGAAGCACGTTCTGCTT
FD950023       --> GCAGGGAGAAAATGGAGGAAGCAAAGGGGCCTGTGAAGCACGTTCTGCTT
FD978645       --> GCAGGGAGAAAATGGAGGAAGCAAAGGGACCTGTGAAGCACGTTCTGCTT
EX762272       --> ggAGGGAGAAAATGGAGGAAGCAAAGGGACCTGTGAAGCACGTTCTGCTT

               101    -    151
UN20025        --> GCTAAGTTCAAAGATGACGTCACCCCAGAGAAGATCGATGAACTTATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903066       <-- GCTAAGTTCAAAGATGACGTCACCCCAGAGAAGATCGATGAACTTATCAA
FD968743       <-- GCTAAGTTCAAAGATGACGTCACCCCAGAGAAGATCGATGAACTTATCAA
FD529932       <-- GCTAAGTTCAAAGATGACGTCACCCCAGAGAAGATCGATGAACTTATCAA
FD945589       <-- GCTAAGTTCAAAGATGACGTCGCCCCAGAGAAGATCGATGAACTTATCAA
FD974844       <-- GCTAAGTTCAAAGATGACGTCACCCCAGATAAGATCGATGAACTTATCAA
FD970210       --> GCTAAGTTCAAAGA....................................
EY907025       --> GCTAAGTTCAAAGATGACGTCACCCCAGAGAAGATCGATGAACTTATCAA
EW714363       --> GCTAAGTCCAAAGATGACGTCACCCCAGAGAAGATCGATGAACTTATCAA
EX749889       --> GCTAAGTTCAGAGATGACGTCACCCCAGAGAAGATCGATGAACTTATCAA
FD533867       --> GCTAAGTTCAAAGATGACGTCACCCCAGAGAAGATCGATGAACTTATCAA
FD950023       --> GCTAAGTTCAAAGATGACGTCGCCCCAGAGAAGATCGATGAACTTATCAA
FD978645       --> GCTAAGTTCAAAGATGACGTCACCCCAGATAAGATCGATGAACTTATCAA
EX762272       --> GCTAAGTTCAAAGATGACGTCACTCCAGAGAAGATCGATGAACTTATCAA

               151    -    201
UN20025        --> AGGTTACGCTAATCTCGTCAATCTCATCGAACCTATGAAAGCTTTCCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903066       <-- AGGTTACGCTAATCTCGTCAATCTCATCGAACCTATGAAAGCTTTCCACT
FD968743       <-- AGGTTACGCTAATCTCGTCAATCTCATCGAACCTATGAAAGCTTTCCACT
FD529932       <-- AGGTTACGCTAATCTCGTCAATCTCATCGAACCTATGAAAGCTTTCCACT
FD945589       <-- AGGTTACGCTAATCTCGTCAATCTCATCGAACCTATGAAAGCTTTCCACT
FD974844       <-- AGGTTACGCTAATCTCGTCAATCTCATCGAACCTATGAAAGCTTTCCACT
FD970210       --> ..................................................
EY907025       --> AGGTTACGCTAATCTCGTCAATCTCATCGAACCTATGAAAGCTTTCCACT
EW714363       --> AGGTTACGCTAATCTCGTCAATCTCATCGAACCTATGAAAGCTTTCCACT
EX749889       --> AGGTTACGCTAATCTCGTCAATCTCATCGAACCTATGAAAGCTTTCCACT
FD533867       --> AGGTTACGCTAATCTCGTCAATCTCATCGAACCTATGAAAGCTTTCCACT
FD950023       --> AGGTTACGCTAATCTCGTCAATCTCATCGAACCTATGAAAGCTTTCCACT
FD978645       --> AGGTTACGCTAATCTCGTCAATCTCATCGAACCTATGAAAGCTTTCCACT
EX762272       --> AGGTTACGCTAATCTCGTCAATCTCATCGAACCTATGAAAGCTTTCCACT

               201    -    251
UN20025        --> GGGGAAAAGATGTGAGCATAGAGAATCTGCATCAAGGTTTCACACACATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903066       <-- GGGGAAAAGATGTGAGCATAGAGAATCTGCATCAAGGTTTCACACACATC
FD968743       <-- GGGGAAAAGATGTGAGCATAGAGAATCTGCATCAAGGTTTCACACACATC
FD529932       <-- GGGGAAAAGATGTGAGCATAGAGAATCTGCATCAAGGTTTCACACACATC
FD945589       <-- GGGGAAAAGATGTGAGCATAGAGAATCTGCATCAAGGTTTCACACACATC
FD974844       <-- GGGGAAAAGATGTGAGCATAGAGAATCTGCATCAAGGTTTCACACACATC
FD970210       --> ..................................................
EY907025       --> GGGGAAAAGATGTGAGCATAGAGAATCTGCATCAAGGTTTCACACACATC
EW714363       --> GGGGGAAAGATGTGAGCATAGAGAATCTGCATCAAGGTTTCACACACATC
EX749889       --> GGGGAAAAGATGTGAGCATAGAGAATCTGCATCAAGGTTTCACACACATC
FD533867       --> GGGGAAAAGATGTGAGCATAGAGAATCTGCATCAAGGTTTCACACACATC
FD950023       --> GGGGAAAAGATGTGAGCATAGAGAATCTGCATCAAGGTTTCACACACATC
FD978645       --> GGGGAAAAGATGTGAGCATAGAGAATCTGCATCAAGGTTTCACACACATC
EX762272       --> GGGGAAAAGATGTGAGCATAGAGAATCTGCATCAAGGTTTCACACACATC

               251    -    301
UN20025        --> TTTGAATCCACGTTTGAGAGCAAAGAAGCTGTAGCTGAGTACGTTGCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903066       <-- TTTGAATCCACGTTTGAGAGCAAAGAAGCTGTAGCTGAGTACGTTGCTCA
FD968743       <-- TTTGAATCCACGTTTGAGAGCAAAGAAGCTGTAGCTGAGTACGTTGCTCA
FD529932       <-- TTTGAATCCACGTTTGAGAGCAAAGAAGCTGTAGCTGAGTACGTTGCTCA
FD945589       <-- TTTGAATCCACGTTTGAGAGCAAAGAAGCTGTAGCTGAGTACGTTGCTCA
FD974844       <-- TTTGAATCCACGTTTGAGAGCAAAGAAGCTGTAGCTGAGTACGTTGCTCA
FD970210       --> ..................................................
EY907025       --> TTTGAATCCACGTTTGAGAGCAAAGAAGCTGTAGCTGAGTACGTTGCTCA
EW714363       --> TTTGAATCCACGTTTGAGAGCAAAGAAGCTGTAGCTGAGTACGTTGCTCA
EX749889       --> TTTGAATCCACGTTTGAGAGCAAAGAAGCTGTAGCTGAGTACGTTGCTCA
FD533867       --> TTTGAATCCACGTTTGAGAGCAAAGAAGCTGTAGCTGAGTACGTTGCTCA
FD950023       --> TTTGAATCCACGTTTGAGAGCAAAGAAGCTGTAGCTGAGTACGTTGCTCA
FD978645       --> TTTGAATCCACGTTTGAGAGCAAAGAAGCTGTAGCTGAGTACGTTGCTCA
EX762272       --> TTTGAATCCACGTTTGAGAGCAAAGAAGCTGTAGCTGAGTACGTTGCTCA

               301    -    351
UN20025        --> TCCTATTCACGTTGAGTTCGCCACCATGTTCCTAGGCAGCTTGGATAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903066       <-- TCCTATTCACGTTGAGTTCGCCACCATGTTCCTAGGCAGCTTGGATAAAG
FD968743       <-- TCCTATTCACGTTGAGTTCGCCACCATGTTCCTAGGCAGCTTGGATAAAG
FD529932       <-- TCCTATTCACGTTGAGTTCGCCACCATGTTCCTAGGCAGCTTGGATAAAG
FD945589       <-- TCCTATTCACGTTGAGTTCGCCACCATGTTCCTAGGCAGCTTGGATAAAG
FD974844       <-- TCCTATTCACGTTGAGTTCGCCACCATGTTCCTAGGCAGCTTGGATAAAG
FD970210       --> ..................................................
EY907025       --> TCCTATTCACGTTGAGTTCGCCACCATGTTCCTAGGCAGCTTGGATAAAG
EW714363       --> TCCTATTCACGTTGAGTTCGCCACCATGTTCCTAGGCAGCTTGGATAAAG
EX749889       --> TCCTATTCACGTTGAGTTCGCCACCATGTTCCTAGGCAGCTTGGATAAAG
FD533867       --> TCCTATTCACGTTGAGTTCGCCACCATGTTCCTAGGCAGCTTGGATAAAG
FD950023       --> TCCTATTCACGTTGAGTTCGCCACCATGTTCCTAGGCAGCTTGGATAAAG
FD978645       --> TCCTATTCACGTTGAGTTCGCCACCATGTTCCTAGGCAGCTTGGATAAAG
EX762272       --> TCCTATTCACGTTGAGTTCGCCACCATGTTCCTAGGCAGCTTGGATAAAG

               351    -    401
UN20025        --> TGTTGGTCATAGACTACAAGCCTACCTCTGTTTAAATTCGTCTTCTTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903066       <-- TGTTGGTCATAGACTACAAGCCTACCTCTGTTTAAATTCATCTTCTTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968743       <-- TGTTGGTCATAGACTACAAGCCTACCTCTGTTTAAATTCATCTTCTTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD529932       <-- TGTTGATCATAGACTACAAGCCTACCTCTGTTTAAATTCGTCTTCTTTGT  Raphanus raphanistrum subsp. maritimus
FD945589       <-- TGTTGGTCATAGACTACAAGCCTACCTCTGTTTAAATTCATCTTCTTTGT  Raphanus sativus cv Early Scarlet Globe
FD974844       <-- TGTTGGTCATAGACTACAAGCCTACCTCTGTTTAAATTCGTCTTCTTTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970210       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907025       --> TGTTGGTCATAGACTACAAGCCTACCTCTGTTTAAATTCATCTTCTTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW714363       --> TGTTGGTCATAGACTACAAGCCTACCTCTGTTTAAATTCGTCTTCTTTGT  Raphanus sativus var. oleiformis
EX749889       --> TGTTGATCATAGACTACAAGCCTACCTCTGTTTAAATTCGTCTTCTTTGT  Raphanus raphanistrum subsp. maritimus
FD533867       --> TGTTGATCATAGACTACAAGCCTACCTCTGTTTAAATTCGTCTTCTTTGT  Raphanus raphanistrum subsp. maritimus
FD950023       --> TGTTGGTCATAGACTACAAGCCTACCTCTGTTTAAATTCATCTTCTTTGT  Raphanus sativus cv Early Scarlet Globe
FD978645       --> TGTTGGTCATAGACTACAAGCCTACCTCTGTTTAAATTCGTCTTCTTTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX762272       --> TGTTGGTCATAGACTACAAGCCTACCTCAGTTTAAATTCGTCTTCTTTGT  Raphanus raphanistrum subsp. raphanistrum (NY)

               401    -    451
UN20025        --> GTGATCTTTGTTTGTAATAAAGTATGTTCCTTTT-GATGTATTTGCCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903066       <-- GTGATCTTTGTTTGTAATAAAGTATGTTCCTTTT-GATGTATTAGCCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968743       <-- GTGATCTTTGTTTGTAATAAAGTATGTTCCTTTT-GATGTATTTGCCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD529932       <-- GTGATCTTTGTTTGTAATAAAGTATGTTCCTTTT-GATGTATTTGACATT  Raphanus raphanistrum subsp. maritimus
FD945589       <-- GTGATCTTTGTTTGTAATAAAGTATGTTCCTTTT-GATGTATTTGACATT  Raphanus sativus cv Early Scarlet Globe
FD974844       <-- GTGATCTTTGTTTGTAATAAAGTATGTTCCTTTTTGATGTATTTGCCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970210       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907025       --> GTGATCTTTGTTTGTAATAAAGTATGTTCCTTTT-GATGTATTAGCCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW714363       --> GTGATTTTTGTTTGTAATAAAGTATGTTCCTTTT-GATGTATTTGCCATT  Raphanus sativus var. oleiformis
EX749889       --> GTGATCTTTGTTTGTAATAAAGTATGTTCCTTTT-GATGTATTTGACATT  Raphanus raphanistrum subsp. maritimus
FD533867       --> GTGATCTTTGTTTGTAATAAAGTATGTTCCTTTT-GATGTATTTGACATT  Raphanus raphanistrum subsp. maritimus
FD950023       --> GTGATCTTTGTTTGTAATAAAGTATGTTCCTTTT-GATGTATTTGACATT  Raphanus sativus cv Early Scarlet Globe
FD978645       --> GTGATCTTTGTTTGTAATAAAGTATGTTCCTTTTTGATGTATTTGCCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX762272       --> GTGATCTTTGTTTGTAATAAAGTATGTTCCTTTT-GATGTATTTGACATT  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN20025        --> GGTTAATTTGTCTGCCTTCTTACAATGTTTCTGTCAATCTCTTTATTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903066       <-- GGTTAATTTGTCTGCCTTCTTATGATGTTTCTGTCAATCTCTTTATTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968743       <-- GGTTAATTTGTCTGCCTTCTTATGATGTTTCTGTCAATCTCTTTATTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD529932       <-- GGTTAATTTGTCTGCCTTCTTACAATGTTTCTGTCAATCTCTTTATTTTT  Raphanus raphanistrum subsp. maritimus
FD945589       <-- GGTTAATTTGTCTGCCTTCTTACAATGTTTCTGTCAATCTCTTTATTTTT  Raphanus sativus cv Early Scarlet Globe
FD974844       <-- GGTTAATTTGTCTGCCTTCTTATAATGTTTCTGTCAATCTCTTTATTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970210       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907025       --> GGTTAATTTGTCTGCCTTCTTATGATGTTTCTGTCAATCTCTTTATTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW714363       --> GGTTAATTTGTCTGCCTTCTTACAATGTTTCTGTCAATCTCTTTATTTTT  Raphanus sativus var. oleiformis
EX749889       --> GGTTAATTTGTCTGCCTTCTTACAATGTTTCTGTCAATCTCTTTATTTTT  Raphanus raphanistrum subsp. maritimus
FD533867       --> GGTTAATTTGTCTGCCTTCTTACAATGTTTCTGTCAATCTCTTTATTTTT  Raphanus raphanistrum subsp. maritimus
FD950023       --> GGTTAATTTGTCTGCCTTCTTACAATGTTTCTGTCAATCTCTTTATTTTT  Raphanus sativus cv Early Scarlet Globe
FD978645       --> GGTTAATTTGTCTGCCTTCTTATAATGTTTCTGTCAATCTCTTTATTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX762272       --> GGTTAATTTGTCTGCCTTCTTACAATGTTTCTGTCAATCTCTTTATTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN20025        --> CTTTGTATCAGACAATGTGTGT-TAAAAGATCATTAGTGTTTTGCTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903066       <-- CTTTGTATCAGACAATGTGTGTGTAAAAGATCATTAGTGTTTTGCTTGT.  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968743       <-- CTTTGTATCAGACAATGTGTGTGTAAAAGATCATTAGTGTTTTGCTTGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD529932       <-- CTTTGTATCAGACAATGTGTGTCTAAAAGATCATTAGTGTTTTGCc....  Raphanus raphanistrum subsp. maritimus
FD945589       <-- CTTTGTATCAGACAATGTGTGT--AAAAGATCATTAGTGTTTTGCTTGTT  Raphanus sativus cv Early Scarlet Globe
FD974844       <-- CTTTGTAGCAGACAATGTGTGT--AAAAGATCATTAGTGTTTTGCTTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970210       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907025       --> CTTTGTATCAGACAATGTGTGTGTAAAAGATCATTAGTGTTTTGCTTGT.  Raphanus raphanistrum subsp. raphanistrum (MS)
EW714363       --> CTTTGTATCAGACAATGTGTGTGTAAAAGATCATTAGTGTTTTGCTTGTT  Raphanus sativus var. oleiformis
EX749889       --> CTTTGTATCAGACAATGTGTGTCTAAAAGATCATTAGTGTTTTGCTTGTT  Raphanus raphanistrum subsp. maritimus
FD533867       --> CTTTGTATCAGACAATGTGTGTCTAAAAGATCATTAGTGTTTTGCc....  Raphanus raphanistrum subsp. maritimus
FD950023       --> CTTTGTATCAGACAATGTGTGT--AAAAGATCATTAGTGTTTTGCTTGTT  Raphanus sativus cv Early Scarlet Globe
FD978645       --> CTTTGTAGCAGACAATGTGTGT--AAAAGATCATTAGTGTTTTGCTTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX762272       --> CTTTGTATCAGACAATGTGTGT--AAAAGATCATTAGTGTTTTGCTTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               551    -    601
UN20025        --> TTCTTTTATGGTTTGAGTACTTTGTCGTCACTTAATCTCTTGTATTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903066       <-- ..................................................
FD968743       <-- TTCTTTTATGGTct....................................
FD529932       <-- ..................................................
FD945589       <-- TTCTTTc...........................................
FD974844       <-- TTCTTTTATGGTTTGAGTACTTTGTCGTCACTTAATCTCTTGTATTTTTT
FD970210       --> ..................................................
EY907025       --> ..................................................
EW714363       --> TTCTTT............................................
EX749889       --> TTCTTTTATGGTTTGAGTGCTTTGTCGTCt....................
FD533867       --> ..................................................
FD950023       --> TTCTTTc...........................................
FD978645       --> TTCTTTTATGGTTTGAGTACTTTGTCGTCACTTAATCTCTTGTATTTTTT
EX762272       --> TTCTTTT...........................................

               601    -    651
UN20025        --> TTTTTTATCAATAATGGTAATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~
EY903066       <-- .......................
FD968743       <-- .......................
FD529932       <-- .......................
FD945589       <-- .......................
FD974844       <-- TTTTTTATCAATAATGGTAATAG
FD970210       --> .......................
EY907025       --> .......................
EW714363       --> .......................
EX749889       --> .......................
FD533867       --> .......................
FD950023       --> .......................
FD978645       --> TTTTTTATCAATAATGGTAATAG
EX762272       --> .......................