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Alignment for radish unigene UN20035

               1      -     51
UN20035        --> CCAACTTAAAATAAAATTTAGGATTCAATTATTTAAAAAGTATTCGTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- .......gAAATAAAATTTAGGATTCAATTATTTAAAAAGTATTCGTATT
EV551516       <-- ..................................................
EX902889       <-- ..................................................
FD954720       <-- ..................................................
EX746097       <-- ..................................................
EV567311       <-- ..................................................
EW733114       <-- ..................................................
EY932559       <-- ..................................................
EY929388       <-- ..................................................
FD550330       <-- ..................................................
FD986697       <-- ..................................................
EW737769       --> CCAACTTAAAATAAAATTTAGGATTCAATTATTTAAAAAGTATTCGTATT
FD950917       --> .....cTAAAATAAAATTTAGGATTCAATTATTTAAAAAGTATTCGTATT
EV546597       --> .......AAAATAAAATTTAGGATTCAATTATTTAAAA-GTATTCGTATT
EW721287       --> .......gAAATAAAATTTAGGATTCAATTATTTAAAAAGTATTCGTATT
EV572281       --> .........................ctATTATTTAAAAAGTATTCGTATT
FD982904       --> ..................................cAAAAGTATTCGTATT
EY928263       --> ...............................................ATT
FD546300       --> ...............................................ATT
EY925835       --> ..................................................
EX750584       --> ..................................................

               51     -    101
UN20035        --> TAAATTCTTACAACTCATCACAACA---TCGGGGATCTGTAATATTTGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- TAAATTCTTACAACTCATCACAACA---TCGGGGATCTGTAATATTTGCC
EV551516       <-- ......................................GTAATATTTGCC
EX902889       <-- ..................................................
FD954720       <-- ..................................................
EX746097       <-- ..................................................
EV567311       <-- ..................................................
EW733114       <-- ..................................................
EY932559       <-- ..................................................
EY929388       <-- ..................................................
FD550330       <-- ..................................................
FD986697       <-- ..................................................
EW737769       --> TAAATTCTTACAACTCAGCACAACAACATCTGGGATCTGTAATATTTGCC
FD950917       --> TAAATTCTTACAACTCAGCACAACAACATCTGGGATCTGTAATATTTGCC
EV546597       --> TAAATTCTTACAACTCATCACAACAACATCGGGGATATGTAATATTTGCC
EW721287       --> TAAATTCTTACAACTCATCACAACA---TCGGGGATCTGTAATATTTGCC
EV572281       --> TAAATTCTTACAACTCATCACAACA---TTGGGGATCTGTAATATTTGCC
FD982904       --> TAAATTCTTACAACTCATCACAACA---TCGGGGATCTGTAATATTTGCC
EY928263       --> TAAATTCTTACAACTCATCACAACA---TCGGGGATCTGTAATATTTGCC
FD546300       --> TAAATTCTTACAACTCATCACAACA---TCGGGGATCTGTAATATTTGCC
EY925835       --> ..AATTCTTACAACTCATCACAACA---TCGGGGATTTGTAATATTTGCC
EX750584       --> ................................GGATCTGTAATATTTGCC

               101    -    151
UN20035        --> ATCGTATAAGCAAAATGTACAATTCACATCACTTATGATAATTAAGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- ATCGTATAAGCAAAATGTACAATTCACATCACTTATGATAATTAAGAAGA
EV551516       <-- ATCGTATAAGCAAAATGTACAATTCACATCACTTATGATAATAAAGAAGA
EX902889       <-- .................................TATGATAATAAAGAAGA
FD954720       <-- ..................................................
EX746097       <-- ..................................................
EV567311       <-- ..................................................
EW733114       <-- ..................................................
EY932559       <-- ..................................................
EY929388       <-- ..................................................
FD550330       <-- ..................................................
FD986697       <-- ..................................................
EW737769       --> ATCGTATAAGCAAAATGTACAATTCACATCACTTATGATAATAAAGAAGA
FD950917       --> ATCGTATAAGCAAAATGTACAATTCACATCACTTATGATAATAAAGAAGA
EV546597       --> ATCGTATAAGCAAAATGTACAATTCACATCACTTATGATAATAAAGAAAA
EW721287       --> ATCGTATAAGCAAAATGTACAATTCACATCACTTATGATAATTAAGAAGA
EV572281       --> ATCGTATAAGCAAAATGTACAATTCACATCACTTATGATAATTAAGAAGA
FD982904       --> ACCGTATAAGCAAAATGTACAATTCACATCACTTATGATAATTAAGAAGA
EY928263       --> ATCGTATAAGCAAAATGTACAATTCACATCACTTATGATAATTAAGAAGA
FD546300       --> ATCGTATAAGCAAAATGTACAATTCACATCACTTATGATAATTAAGAAGA
EY925835       --> ATCGTATAAGCAAAATGTACAATTCACATCATTTATGATAATTAAGAAGA
EX750584       --> ATCGTATAAGCAAAATGTACAATTCACATCACTTATGATAATTAAGAAGG

               151    -    201
UN20035        --> CTATAATATATAATGGAGTCGTTAATTAGCTCACCTAATTTCGCTCCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- CTATAACATATAATGGAGTCGTTAATTAGCTCACCTAATTTCGCTCCGTC
EV551516       <-- CTATAATATATAACGGAGTCGTTAATTAGCTCACCTAATTTCGCTCCGTC
EX902889       <-- CTATAATATATAATGGAGTCGTTAATTAGCTCAC-TAATTTCGCTCCGTC
FD954720       <-- ..............GGAGTCGTTAATTAGCTCAC-TAATTTCGCTC-GTC
EX746097       <-- .................GTCGTTAACTAGCTCAC-TAATTTCACTC-GTC
EV567311       <-- ......................................TTTCGCTCCGTC
EW733114       <-- ......................................TTTCGCTCCGTC
EY932559       <-- ..................................................
EY929388       <-- ..................................................
FD550330       <-- ..................................................
FD986697       <-- ..................................................
EW737769       --> CTATAATATATAATGGAGTCGTTAATTAGCTCACCTAATTTCGCTCCGTC
FD950917       --> CTATAATATATAATGGAGTCGTTAATTAGCTCACCTAATTTCGCTCCGTC
EV546597       --> CTATAATATATAACGGAGTCGTTAATTAGCTCACCTAATTTCGCTCCGTC
EW721287       --> CTATAACATATAATGGAGTCGTTAATTAGCTCACCTAATTTCGCTCCGTC
EV572281       --> CTATAATATATAATGGAGTCGTTAATTAGCTCACCTAATTTCGCTCCGTC
FD982904       --> CTATAATATATAATGGAGTCGTTAATTAGCTCACCTAATTTCGCTCCGTC
EY928263       --> CTATAATATATAATGGAGTCGTTAATTAGCTCACCTAATTTCGCTCCGTC
FD546300       --> CTATAATATATAATGGAGTCGTTAATTAGCTCACCTAATTTCGCTCCGTC
EY925835       --> CTATAATATATAATGGAGTCGTTAATTAGCTCACCTAATTTCGCTCCGTC
EX750584       --> CTATAATATATAATGGAGTCGTTAACTAGCTCACCTAATTTCACTCCGTC

               201    -    251
UN20035        --> GCCGTTTTAGACACTAACACTACAGCTACTCGTAAGCGTATACTTAACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- GCCGTTTTAGACACTAACACTACAGCTACTCGTAAGCGTATACTTAACGG
EV551516       <-- GCCGTTTTAGACACTAACACTACAGCTACTCGTAAGCGTATACTTAACGG
EX902889       <-- G-TG-TTTAGACACTAACACTACAGCTACTCGTAAGCGTATACTTAACGG
FD954720       <-- GC-GTTTTAGACACTAACACTACAGCTACTCGTAAGCGTATACTTAACGG
EX746097       <-- GCCGTTT-AGACACTAACACTACAGCTACTCGTAAGCGTATACTTAACGG
EV567311       <-- GCCGTTTTAGACACTAACACTACAGCTACTCGTAAGCGTATACTTAACGG
EW733114       <-- GC-GTTTTAGACACTAACACTACAGCTACTCGTAAGCGTATACTTAACGG
EY932559       <-- ..................................................
EY929388       <-- ..................................................
FD550330       <-- ..................................................
FD986697       <-- ..................................................
EW737769       --> GC-GTTTTAGACACTAACACTACAGCTACTCGTAAGCGTATACTTAACGG
FD950917       --> GC-GTTTTAAACACTAACACTACAGCTACTCGTAAGCGTATACTTAACGG
EV546597       --> GCCGTTTTAAACACTAACACTACAGCTACTCGTAAGCGTATACTTAACGG
EW721287       --> GCCGTTTTAGACACTAACACTACAGCTACTCGTAAGCGTATACTTAACGG
EV572281       --> GCCGTTTTAGACACTAACACTACAGCTACTCGTAAGCGTATACTTAACGG
FD982904       --> GCCGTTTTAGACACTAACACTACAGCTACCCGTAAGCGTATACTTAACGG
EY928263       --> GCCGTTTTAGACACTAACACTACAGCTACTCGTAAGCGTATACTTAACGG
FD546300       --> GCCGTTTTAGACACTAACACTACAGCTACTCGTAAGCGTATACTTAACGG
EY925835       --> GCCGTTTTAGACACTAACACTACAGCTACTCGTAAGCGTATACTTAACGG
EX750584       --> GCCGTTTTAGACACTAACACTACAGCTACTCGTAAGCGTATACTTAACGG

               251    -    301
UN20035        --> CGTTATCTCCGACAATAACTCCGGCAGCTTTATTACCGAAGTTAATATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- CGTTATCTCCGACAATAACTCCGGCAGCTTTATTACCGAAGTTAATATAC
EV551516       <-- CGTTATCTCCGACAATAACTCCGGCAGCTTTATTACCGAAGTTAATATAT
EX902889       <-- CGTTATCTCCGACAATAACTCCGGCAGCTTTATTACCGAAGTTAATATAC
FD954720       <-- CGTTATCTCCGACAATAACTCCGGCAGCTTTATTAC-GAAGTTAATATAC
EX746097       <-- CGT-ATCTC-GACAATAACTCCGGCAGCTTTATTACCGAAGTTAATATAC
EV567311       <-- CGTTATCTCCGACAATAACTCCGGCAGCTTTATTACCGAAGTTAATATAC
EW733114       <-- CGTTATCTCCGACAATAACTCCGGCAGCTTTATTACCGAAGTTAATATAC
EY932559       <-- ..................................................
EY929388       <-- ..................................................
FD550330       <-- ..................................................
FD986697       <-- ..................................................
EW737769       --> CGTTATCTCCGACAATAACTCCGGCAGCTTTATTACCGAAGTTAATATAC
FD950917       --> CGTTATCTCCGACAATAACTCCGGCAGCTTTATTACCGAAGTTAATATAC
EV546597       --> CGTTATCTCCGACAATAACTCCGGCAGCTTTATTACCGAAGTTAATATAT
EW721287       --> CGTTATCTCCGACAATAACTCCGGCAGCTTTATTACCGAAGTTAATATAC
EV572281       --> CGTTATCTCCGACAATAACTCCGGCAGCTTTATTACCGAAGTTAATATAC
FD982904       --> CGTTATCTCCGACAATAACTCCGGCAGCTTTATTACCGAAGTTAATATAC
EY928263       --> CGTTATCTCCGACAATAACTCCGGCAGCTTTATTACCGAAGTTAATATAC
FD546300       --> CGTTATCTCCGACAATAACTCCGGCAGCTTTATTACCGAAGTTAATATAC
EY925835       --> CGTTATCTCCGACAATAACTCCGGCAGCTTTATTACCGAAGTTAATATAC
EX750584       --> CGTTATCTCCGACAATAACTCCGGCAGCTTTATTACCGAAGTTAATATAC

               301    -    351
UN20035        --> GCAAGACACCTCACGTAAAGATGATACTTCCCTGTAATAAACGCCCCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- GCAAGACACCTCACGTAAAGATGATACTTCCCTGTAATAAACGCCCCAAC
EV551516       <-- GCAAGACACCTCACGTAAAGATGATACTTCCCTGTAATAAACGCCCCAAC
EX902889       <-- GCAAGACACCTCACGTAAAGATGATACTTCCCTGTAATAAACGCCCCAAC
FD954720       <-- GCAAGACACCTCACGTAAAGATGATACTTCCCTGTAATAAACGCCCCAAC
EX746097       <-- GCAAGACACCTCACGTAAAGATGATACTTCCCTGTAATAAACGCCCCAAC
EV567311       <-- GCAAGACACCTCACGTAAAGATGATACTTCCCTGTAATAAACGCCCCAAC
EW733114       <-- GCAAGACACCTCACGTAAAGACGATACTTCCCTGTAATAAACGCCCCAAC
EY932559       <-- ....................................aatAACGCCCCAAC
EY929388       <-- ..................................................
FD550330       <-- ..................................................
FD986697       <-- ..................................................
EW737769       --> GCAAGACACCTCACGTAAAGACGATACTTCCCTGTAATAAACGCCCCAAC
FD950917       --> GCAAGACACCTCACGTAAAGATGATACTTCCCTGTAATAAACGCCCCAAC
EV546597       --> GCAAGACACCTCACGTAAAGATGATACTTCCCTGTAATAAACGCCCCAAC
EW721287       --> GCAAGACACCTCACGTAAAGATGATACTTCCCTGTAATAAACGCCCCAAC
EV572281       --> GCAAGACACCTCACGTAAAGATGATACTTCCCTGTAATAAACGCCCCAAC
FD982904       --> GCAAGACACCTCACGTAAAGATGATACTTCCCTGTAATAAACGCCCCAAC
EY928263       --> GCAAGACACCTCACGTAAAGATGATACTTCCCTGTAATAAACGCCCCAAC
FD546300       --> GCAAGACACCTCACGTAAAGATGATACTTCCCTGTAATAAACGCCCCAAC
EY925835       --> GCAAGACACCTCACGTAAAGATGATACTTCCCTGTAATAAACGCCCCAAC
EX750584       --> GCAAGACACCTCACGTAAAGATGATACTTCCCTGTAATAAACGCCCCAAC

               351    -    401
UN20035        --> TTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- TTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGT
EV551516       <-- TTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGT
EX902889       <-- TTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGT
FD954720       <-- TTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGT
EX746097       <-- TTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGT
EV567311       <-- TTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGT
EW733114       <-- TTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGT
EY932559       <-- TTTCCACCTCACTTTAC-GTCACCACGGATGATCAGCGTAACAGCGCCGT
EY929388       <-- ....................CACCACGGATGATCAGCGTAACAGCGCCGT
FD550330       <-- ..................................................
FD986697       <-- ..................................................
EW737769       --> TTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGT
FD950917       --> TTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGT
EV546597       --> TTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGT
EW721287       --> TTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGT
EV572281       --> TTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGT
FD982904       --> TTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGT
EY928263       --> TTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGT
FD546300       --> TTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGT
EY925835       --> TTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGT
EX750584       --> TTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGT

               401    -    451
UN20035        --> TATCTTGATCGCCGCCAAGACTGACGGCGTTGAACGGAGCGACGGGAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- TATCTTGATCGCCGCCAAGACTGACGGCGTTGAACGGAGCGACGGGAACA  Raphanus sativus var. oleiformis
EV551516       <-- TATCTTGATCGCCGCCAAGACTAACGGCGTTGAACGGAGCGACGGGAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902889       <-- TATCTTGATCGCCGCCAAGACTGACGGCGTTGAACGGAGCGACGGGAACA  Raphanus sativus cv Rat-Tail Radish #3870
FD954720       <-- TATCTTGATCGCCGCCAAGACTGACGGCGTTGAACGGAGCGACGGGAACA  Raphanus sativus cv Rat-Tail Radish #3870
EX746097       <-- TATCTTGATCGCCGCCAAGACTAACGGCGTTGAACGGAGCGACGGGAACA  Raphanus raphanistrum subsp. maritimus
EV567311       <-- TATCTTGATCGCCGCCAAGACTGACGGCGTTGAACGGAGCGACGGGAACA  Raphanus raphanistrum subsp. landra
EW733114       <-- TATCTTGATCGCCGCCAAGACTGACGGCGTTGAACGGAGCGACGGGAACA  Raphanus sativus cv Rat-Tail Radish #3870
EY932559       <-- TATCTTGATCGCCGCCAAGACTGACGGCGTTGAACGGAGCGACGGGAACA  Raphanus sativus var. oleiformis
EY929388       <-- TATCTTGATCGCCGCCAAGACTAACGGCGTTGAACGGAGCGACGGGAACA  Raphanus sativus var. oleiformis
FD550330       <-- .........CGCCGCCAAGACTGACGGCGTTGAACGGAGCGACGGGAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD986697       <-- ..........................GCGTTGAACGGAGCGACGGGAACA  Raphanus raphanistrum subsp. landra
EW737769       --> TATCTTGATCGCCGCCAAGACTGACGGCGTTGAACGGAGCGACGGGAACA  Raphanus sativus cv Rat-Tail Radish #3870
FD950917       --> TATCTTGATCGCCGCCAAGACTGACGGCGTTGAACGGAGCGACGGGAACA  Raphanus sativus cv Rat-Tail Radish #3870
EV546597       --> TATCTTGATCGCCGCCAAGACTAACGGCGTTGAACGGAGCGACGGGAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721287       --> TATCTTGATCGCCGCCAAGACTGACGGCGTTGAACGGAGCGACGGGAACA  Raphanus sativus var. oleiformis
EV572281       --> TATCTTGATCGCCGCCAAGACTGACGGCGTTGAACGGAGCGACGGGAACA  Raphanus raphanistrum subsp. landra
FD982904       --> TATCTTGATCGCCGCCAAGACTGACGGCGTTGAACGGAGCGACGGGAACA  Raphanus raphanistrum subsp. landra
EY928263       --> TATCTTGATCGCCGCCAAGACTGACGGCGTTGAACGGAGCGACGGGAACA  Raphanus sativus var. oleiformis
FD546300       --> TATCTTGATCGCCGCCAAGACTGACGGCGTTGAACGGAGCGACGGGAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY925835       --> TATCTTGATCGCCGCCAAGACTAACGGCGTTGAACGGAGCGACGGGAACA  Raphanus sativus var. oleiformis
EX750584       --> TATCTTGATCGCCGCCAAGACTAACGGCGTTGAACGGAGCGACGGGAACA  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN20035        --> GAGGTGCCGTAGACAAACGGCGACCATATGTTGACTTCTTTGTGTCCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- GAGGTGCCGTAGACAAACGGCGACCATATGTTGACTTCTTTGTGTCCCTG  Raphanus sativus var. oleiformis
EV551516       <-- GAGGTCCCGTAGACAAACGGCGACCATATGTTGACTTCTTTGTGTCCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902889       <-- GAGGTGCCGTAGACAAACGGCGACCATATGTTGACTTCTTTGTGTCCCTG  Raphanus sativus cv Rat-Tail Radish #3870
FD954720       <-- GAGGTGCCGTAGACAAACGGCGACCATATGTTGACTTCTTTGTGTCCCTG  Raphanus sativus cv Rat-Tail Radish #3870
EX746097       <-- GAGGTCCCGTAGACAAAAGGCGACCATATGTTGACTTCTTTGTGTCCCTG  Raphanus raphanistrum subsp. maritimus
EV567311       <-- GAGGTGCCGTAGACAAACGGCGACCATATGTTGACTTCTTTGTGTCCCTG  Raphanus raphanistrum subsp. landra
EW733114       <-- GAGGTGCCGTAGACAAACGGCGACCATATGTTGACTTCTTTGTGTCCCTG  Raphanus sativus cv Rat-Tail Radish #3870
EY932559       <-- GAGGTGCCGTAGACAAACGGCGACCATATGTTGACTTCTTTGTGTCCCTG  Raphanus sativus var. oleiformis
EY929388       <-- GAGGTCCCGTAGACAAAAGGCGACCATATGTTGACTTCTTTGTGTCCCTG  Raphanus sativus var. oleiformis
FD550330       <-- GAGGTGCCGTAGACAAACGGCGACCATATGTTGACTTCTTTGTGTCCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD986697       <-- GAGGTGCCGTAGACAAACGGCGACCATATGTTGACTTCATTGTGTCCCTG  Raphanus raphanistrum subsp. landra
EW737769       --> GAGGTGCCGTAAACAAACGGCGACCATATGTTGACTTCTTTGTGTCCCTG  Raphanus sativus cv Rat-Tail Radish #3870
FD950917       --> GAGGTGCCGTAAACAAACGGCGACCATATGTTGACTTCTTTGTGTCCCTG  Raphanus sativus cv Rat-Tail Radish #3870
EV546597       --> GAGGTCCCGTAAACAAACGGCGACCATATGTTGACTTCTTTGTGTCCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721287       --> GAGGTGCCGTAGACAAACGGCGACCATATGTTGACTTCTTTGTGTCCCTG  Raphanus sativus var. oleiformis
EV572281       --> GAGGTGCCGTAAACAAACGGCGACCATATGTTGACTTCTTTGTGTCCCTG  Raphanus raphanistrum subsp. landra
FD982904       --> GAGGTGCCGTAAACAAACGGCGACCATATGTTGACTTCATTGTGTCCCTG  Raphanus raphanistrum subsp. landra
EY928263       --> GAGGTGCCGTAGACAAACGGCGACCATATGTTGACTTCTTTGTGTCCCTG  Raphanus sativus var. oleiformis
FD546300       --> GAGGTGCCGTAGA.....................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY925835       --> GAGGTCCCGTAAACAAAAGGCGACCATATGTTGACTTCTTTGTGTCCCTG  Raphanus sativus var. oleiformis
EX750584       --> GAGGTCCCGTAGACAAAAGGCGACCATATGTTGACTTCTTTGTGTCCCTG  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN20035        --> ATACGTAGGAGGGATCGATGTTCGGAAAGTGATCTGTTGGCTATGGTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- ATACGTAGGAGGGATCGATGTTCGGAAAGTGATCTGTTGGCTATGGTAAG
EV551516       <-- ATACGTAGGAGGGATCGATGTTCGGAAAGTGATCTGTTGGCTATGGTAAG
EX902889       <-- ATACGTAGGAGGGATCGATGTTCGGAAAGTGATCTGTTGGCTATGGTAAG
FD954720       <-- ATACGTAGGAGGGATCGATGTTCGGAAAGTGATCTGTTGGCTATGGTAAG
EX746097       <-- ATACGTCGGAGGGATCGATGTTCGGAAAGTGATCTGTTGGCTATGGTAAG
EV567311       <-- ATACGTAGGAGGGATCGATGTTCGGGAAGTGATCTGTTGGCTATGGTAAG
EW733114       <-- ATACGTAGGAGGGATCGATGTTCGGAAAGTGATCTGTTGGCTATGGTAAG
EY932559       <-- ATACGTAGGAGGGATCGATGTTCGGAAAGTGATCTGTTGGCTATGGTAAG
EY929388       <-- ATACGTCGGAGGGATCGATGTTCGGAAAGTGATCTGTTGGCTATGGTAAG
FD550330       <-- ATACGTAGGAGGGATCGATGTTCGGAAAGTGATCTGTTGGCTATGGTAAG
FD986697       <-- ATACGTAGGAGGGATCGATGTTCGGAAAGTGATCTGTTGGCTATGGTAAG
EW737769       --> ATACGTAGGAGGGATCGATGTTCGGAAAGTGATCTGTTGGCTATGGTAAG
FD950917       --> ATACGTAGGAGGGATCGATGTTCGGAAAGTGATCTGTTGGCTATGGTAAG
EV546597       --> ATACGTAGGAGGGATCGATGTTCGGAAAGTGATCTGTTGGCTATGGTAAG
EW721287       --> ATACGTAGGAGGGATCGATGTTCGGAAAGTGATCTGTTGGCTATGGTAAG
EV572281       --> ATACGTAGGAGGGATCGATGTTCGGGAAGTGATCTGTTGGCTATGGTAAG
FD982904       --> ATACGTAGGAGGGATCGATGTTCGGAAAGTGATCTGTTGGCTATGGTAAG
EY928263       --> ATACGTAGGAGGGATCGATGTTCGGAAAGTGATCTGTTGGCTATGGTAAG
FD546300       --> ..................................................
EY925835       --> ATACGTCGGAGGGATCGATGTTCGGAAAGTGATCTGTTGGCTATGGTAAG
EX750584       --> ATACGTc...........................................

               551    -    601
UN20035        --> TAGCGTAGACGTCAAGACGGTCGTAGTAGATGCCGATCTTGTCGTTAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- TAGCGTAGACGTCCAGACGGTCGTAGTAGATGCCGATCTTGTCGTTAGGG
EV551516       <-- TAGCGTAGACGTCAAGACGGTCGTAGTAGATGCCGATCTTGTCGTTAGGG
EX902889       <-- TAGCGTAGACGTCAAGGCGGTCGTAGTAGATGCCGATCTTGTCGTTAGGG
FD954720       <-- TAGCGTAGACGTCAAGGCGGTCGTAGTAGATGCCGATCTTGTCGTTAGGG
EX746097       <-- TAGCGTAGACGTCAAGGCGGTCGTAGTAGATGCCGATCTTGTCGTTAGGG
EV567311       <-- TAGCGTAGACGTCAAGACGGTCGTAGTAGATGCCGATCTTGTCGTTAGGG
EW733114       <-- TAGCGTAGACGTCAAGGCGGTCGTAGTAGATGCCGATCTTGTCGTTAGGG
EY932559       <-- TAGCGTAGACGTCCAGACGGTCGTAGTAGATGCCGATCTTGTCGTTAGGG
EY929388       <-- TAGCGTAGACGTCAAGGCGGTCGTAGTAGATGCCGATCTTGTCGTTAGGG
FD550330       <-- TAGCGTAGACGTCAAGACGGTCGTAGTAGATGCCGATCTTGTCGTTAGGG
FD986697       <-- TAGCGTAGACGTCAAGACGGTCGTAGTAGATGCCGATCTTGTCGTTA---
EW737769       --> TAGCGTAAACGTCAAGGCGGTCGTAGTAGATGCCGATCTTGTCGTTAGGG
FD950917       --> TAGCGTAGACGTCAAGGCGGTCGTAGTAGATGCCGATCTTGTCGTTAGGG
EV546597       --> TAGCGTAAACGTCAAGACGGTCGTA.........................
EW721287       --> TAGCGTAGACGTCCAGACGGTCGTAGTAGATGCCGATCTTGTCGTTAGGG
EV572281       --> TAGCGTAGACGTCAAGACGGTCGTAGTAGATGCCGATCTTGTCGTTAGGG
FD982904       --> TAGCGTAGACGTCAAGACGGTCGTAGTAGATGCCGATCTTGTCGTTAGGG
EY928263       --> TAGCGTAGACGTCCAGACGGTCGTAGTAGATGCCGATCTTGTCGTTAGGG
FD546300       --> ..................................................
EY925835       --> TAGCGTAGACGTCAAGGCGGTCGTAGTAGATGCCGATCTTGTCGTTAGGG
EX750584       --> ..................................................

               601    -    651
UN20035        --> TTCCGTGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- TTCCGTGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGG
EV551516       <-- TTCCGGGAAGAGAGAGTGATTTGGAGGTTGGAGGTGAGGAGGTTCGGTGG
EX902889       <-- TTCCGGGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGG
FD954720       <-- TTCCGGGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGG
EX746097       <-- TTCCGGGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGG
EV567311       <-- TTCCGTGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGG
EW733114       <-- TTCCGGGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGG
EY932559       <-- TTCCGTGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGG
EY929388       <-- TTCCGGGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGG
FD550330       <-- TTCCGTGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGG
FD986697       <-- -GGGGTGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGG
EW737769       --> TTCCGGGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGG
FD950917       --> TTCCGGGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGG
EV546597       --> ..................................................
EW721287       --> TTCCGTGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGG
EV572281       --> TTCCGTGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGG
FD982904       --> ----GTGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGG
EY928263       --> TTCCGTGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGG
FD546300       --> ..................................................
EY925835       --> TTCCGGGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGG
EX750584       --> ..................................................

               651    -    701
UN20035        --> ATTGCCGGAGACGTTGAAGGCGTAGACGGTGGCGTCTTGGAGGATGAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- ATTGCCGGAGACGTTGAAGGCGTAGACGGTGGCGTCTTGGAGGATGAAAC
EV551516       <-- ATTGCCGGAGACGTTGAAGGCGTAGACGGTGGCGTCTTGGAGGATGAAAC
EX902889       <-- ATTGCCGGAGACGTTGAAGGCGTAGACGGTGGCGTCTTGGAGGATGAAAC
FD954720       <-- ATTGCCGGAGACGTTGAAGGCGTAGACGGTGGCGTCTTGGAGGATGAAAC
EX746097       <-- ATTGCCGGAGACGTTGAAGGCGTAGACGGTGGCGTCTTGGAGGATGAAAC
EV567311       <-- ATTGCCGGAGACGTTGAAGGCGTAGACGGTGGCGTCTTGGAGGATGAAAC
EW733114       <-- ATTGCCGGAGACGTTGAAGGCGTAGACGGTGGCGTCTTGGAGGATGAAAC
EY932559       <-- ATTGCCGGAGACGTTGAAGGCGTAGACGGTGGCGTCTTGGAGGATGAAAC
EY929388       <-- ATTGCCGGAGGCGTTAAAGGCGTAGACGGTGGCGTCTTGGAGGATGAAAC
FD550330       <-- ATTGCCGGAGACGTTGAAGGCGTAGACGGTGGCGTCTTGGAGGACGAAAC
FD986697       <-- ATTGCCGGAGACGTTGAAGGCGTAGACGGTGGCGTCTTGGAGGATGAAAC
EW737769       --> ATTGCC............................................
FD950917       --> ATTGCCGGAGACGTTGAAGGCGTAGACGGTGGCGTCTTGGAGGATGAAAC
EV546597       --> ..................................................
EW721287       --> ATTGCCGGAGACGTTGAAGGCGTAGACGGTGGCGTCTTGGAGGATGAAAC
EV572281       --> ATTGCCGGAGACGTTGAAGGCGTAGACGGTGGCGTCTTGGAGGATGAAAC
FD982904       --> ATTGCCGGAGACGTTGAAGGCGTAGACGGTGGCGTCTTGGAGGATGAAAC
EY928263       --> ATTGCCGGAGACGTTGAAGGC.............................
FD546300       --> ..................................................
EY925835       --> ATTGCCGGAGGCGTTAAAGGCGTAGACGGTGGCGTCTTGGAGGATGAAAC
EX750584       --> ..................................................

               701    -    751
UN20035        --> GTGGCTTTGAAGGTTGGAGGATTGCCCAAACGAGGAGGATTGTGAGTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- c.................................................
EV551516       <-- GTGGCTTTGAAGGTTGGAGGATTGCCCAAACGAGGAGGATTGTGAGTAAG
EX902889       <-- GTGGTTTTGAAGGTTGGAGGATTGCCCAAACGAGGAGGATTGTGAGTAAG
FD954720       <-- GTGGTTTTGAAGGTTGGAGGATTGCCCAAACGAGGAGGATTGTGAGTAAG
EX746097       <-- GTGGCTTTGAAGGTTGGAGGATTGCCCAAACGAGGAGGATTGTGAGTAAG
EV567311       <-- GTGGCTTTGAAGGCTGGAGGATTGCCCAAATGAGGAGGATTGTGAGTAAG
EW733114       <-- GTGGTTTTGAAGGTTGGAGGATTGCCCAAACGAGGAGGATTGTGAGTAAG
EY932559       <-- GTGGCTTTGAAGGCTGGAGGATTGCCCAAATGAGGAGGATTGTGAGTAAG
EY929388       <-- GTGGCTTTGAAGGTTGGAGGATTGCCCAAACGAGGAGGATTGTGAGTAAG
FD550330       <-- GTGGCTTTGAAGGCTGGAGGATTGCCCAAATGAGGAGGATTGTGAGTAAG
FD986697       <-- GTGGCTTTGAAGGCTGGAGGATTGCCCAAATGAGGAGGATTGTGAGTAAG
EW737769       --> ..................................................
FD950917       --> GTGGTTTT..........................................
EV546597       --> ..................................................
EW721287       --> c.................................................
EV572281       --> GTGGCTTTGAAGGCTGGAGGATTGCCCAAATGAGGAGGATTGTGAGTAAG
FD982904       --> GTGGCTT...........................................
EY928263       --> ..................................................
FD546300       --> ..................................................
EY925835       --> GTGGCTTTGAAGGTTGGAGGATTGCCCAAACGAGGAGGATTGTGAGTAAG
EX750584       --> ..................................................

               751    -    801
UN20035        --> ATGATGAAGAGGACGAAGATTACTGACCATATTATTCGCCGGATTAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- ..................................................
EV551516       <-- ATGATGAAGAGGACGAATATTACTGACCATATTATTCGCCGGATTAGTTT
EX902889       <-- ATGATGAAGAGGACGAATATTACTGACCATATTATTCGCCGGATTAGTTT
FD954720       <-- ATGATGAAGAGGATGAATATTACTGACCATATTATTCGCCGGATTAGTTT
EX746097       <-- ATGATGAAGAGGACGAAGATTACTGACCATATTATTCGCCGGATTAGTTT
EV567311       <-- ATGATGAAGAGGACGAAGATTACTGACCATATTATTCGCCGGATTAGTTT
EW733114       <-- ATGATGAAGAGGACGAATATTAATGACCATATTATTCGCCGGATTAGTTT
EY932559       <-- ATGATGAAGAGGACGAAGATTACTGACCATATTATTCGCCGGATTAGTTT
EY929388       <-- ATGATGAAGAGGACGAAGATTACTGACCATATTATTCGCCGGATCAGTTT
FD550330       <-- ATGATGAAGAGGACGAAGATTACTGACCATATTATTCGCCGGATTAGTTT
FD986697       <-- ATGATGAAGAGGACGAAGATTACTGACCATATTATTCGCCGGATTAGTTT
EW737769       --> ..................................................
FD950917       --> ..................................................
EV546597       --> ..................................................
EW721287       --> ..................................................
EV572281       --> ATGATGA...........................................
FD982904       --> ..................................................
EY928263       --> ..................................................
FD546300       --> ..................................................
EY925835       --> ATGATGAAGAGGACGAAGATTACTGACCATATTATTCGCCGGATCAGTTT
EX750584       --> ..................................................

               801    -    851
UN20035        --> CCGGCGAGAGTGAGTGTGGGAGCCACAGTCTTTGGAGGTCATGGTGGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- ..................................................
EV551516       <-- CCGGCGAGAGTGAGTGTGGGAGCCACAGTCTTTGGAGGTCATGGTGGTGG
EX902889       <-- CCGGCGAGAGTGAGTGTGGGAGCCACAGTCTTTGGAGGTCATGGTGGTGG
FD954720       <-- CCGGCGAGAGTGAGTGTGGGAGCCACAGTCTTTGGAGGTCATGGTGGTGG
EX746097       <-- CCGGCGAGAGTGAGTGTGGGAGCCACAGTCTTTGGAGGTCATGGTGGTGG
EV567311       <-- CCGGCGAGAGTGAGTGTGGGAGCCACAGTCTTTGGAAGTCATGGTGGTGG
EW733114       <-- CCGGCGAGAGTGAGTGTGGGAGCCACAGTCTTTGGAGGTCATGGTGGTGG
EY932559       <-- CCGGCGAGAGTGAGTGTGGGAGCCACAGTCTTTGGAGGTCATGGTGGTGG
EY929388       <-- CCGGCGAGAGTGAGTGTGGGAGCCACAGTCTTTGGAGGTCATGGTGGCGG
FD550330       <-- CCGGCGAGAGTGAGTGTGGGAGCCACAGTCTTTGGAGGTCATGGTGATGG
FD986697       <-- CCGGCGAGAGTGAGTGTGGGAGCCACAGTCTTTGGAGGTCATGGTGATGG
EW737769       --> ..................................................
FD950917       --> ..................................................
EV546597       --> ..................................................
EW721287       --> ..................................................
EV572281       --> ..................................................
FD982904       --> ..................................................
EY928263       --> ..................................................
FD546300       --> ..................................................
EY925835       --> CCGGCGAGAGTGAGTGTGGGAGCCACAGTCTTTGG...............
EX750584       --> ..................................................

               851    -    901
UN20035        --> TGGTTTTTGTTTCTCCGGGGGCGGTGGGGAGAACGTGGAGAAGTTGTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- ..................................................
EV551516       <-- TGGTTTT-CTTTCTCCGGTGGCGGTGGGGAGAACGTGGAGAAGTTGTTAA
EX902889       <-- TGGTTTT-CTTTCTCCGGTGGCGGTGGGGAGAACGTGGAGAAGTTGTTAA
FD954720       <-- TGGTTTT-CTTTCTCCGGTGGCGGTGGGGAGAACGTGGAGAAGTTGTTAA
EX746097       <-- TGGTTTT-CTTTCTCCGGGGGCGGTGGGGAGAACGTGGAGAAGTTGTTAA
EV567311       <-- TGGTTTTTGTTTCTCCGGGGGCGGTGGGGAGAACGTGGAGAAGTTGTTAA
EW733114       <-- TGGTTTT-CTTTCTCCGGTGGCGGTGGGGAGAACGTGGAGAAGTTGTTAA
EY932559       <-- TGGTTTTTGTTTCTCCGGGGGCGGTGGGGAGAACGTGGAGAAGTTGTTAA
EY929388       <-- TGGTTTTTGTTTCTCCGGCGGTGGTGGGGAGAAAGTGGAGAAGTTGTTAA
FD550330       <-- TGGTTTTTGTTTCTCCGGGGGCGGTGGGGAGAACGTGGAGAAGTTGTTAA
FD986697       <-- TGGTTTTTGTTTCTCCGGGGGCGGTGGGGAGAACGTGGAGAAGTTGTTAA
EW737769       --> ..................................................
FD950917       --> ..................................................
EV546597       --> ..................................................
EW721287       --> ..................................................
EV572281       --> ..................................................
FD982904       --> ..................................................
EY928263       --> ..................................................
FD546300       --> ..................................................
EY925835       --> ..................................................
EX750584       --> ..................................................

               901    -    951
UN20035        --> GAGATTTCTTTGTTTATTGTTTATTTGATGTGTTGTAAATCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717257       <-- ...........................................
EV551516       <-- GAGATTTCTTTGTTTATTGTTTATTTGATGTGTTGTcc.....
EX902889       <-- GAGATTCCTTTGTTTATTGTTTATTTGATGTGTTGTc......
FD954720       <-- GAGATTTCTTTGTTTATTGTTTATTTGATGTGTTGTcc.....
EX746097       <-- GAGATTTCTTTGTTTATTGTTTATTTGATGTGTTGTAAATC..
EV567311       <-- GAGATTTCTTTGTTTATTGTTTATTTGATGTGTTGTAAATCC.
EW733114       <-- GAGATTTCTTTGTTTATTGTTTATTTGATGTccc.........
EY932559       <-- GAGATTTCTTTGTTTATTGTTTATTTGATGTGTTGTAAATCC.
EY929388       <-- GAGATTTCTTTGTTTATTGTTTATTTGATGTGTTGTAAATCCC
FD550330       <-- GAGATTTCTTTGTTTATTGTTTATTTGATGTGTTGTcc.....
FD986697       <-- GAGATTTCTTTGTTTATTGTTTATTTGATGTGTTGTAAATCC.
EW737769       --> ...........................................
FD950917       --> ...........................................
EV546597       --> ...........................................
EW721287       --> ...........................................
EV572281       --> ...........................................
FD982904       --> ...........................................
EY928263       --> ...........................................
FD546300       --> ...........................................
EY925835       --> ...........................................
EX750584       --> ...........................................