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Alignment for radish unigene UN20078

               1      -     51
UN20078        --> AGGAGAGCAATATCTTATCCAATTATTATTCTTTTGTTTTATTCTTTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- ..................................................
EV538179       <-- ..................................................
EV527154       <-- ..................................................
FD964484       <-- ..................................................
EX755653       <-- ..................................................
EY901063       <-- ..................................................
EY901306       <-- ..................................................
EV540966       --> AGGAGAGCAATATCTTATCCAATTATTATTCTTTTGTTTTATTCTTTAAA
EV542252       --> ...........ATCTTATCCAATTATTATTCTTTTGTTTTATTCTTTAAA
EV531464       --> .............CTTATCCAATTATTATTCTTTTGTTTTATTCTTTAAA
EY896649       --> ................ATCCAATTATTATTCTTTTGTTTTATTCTTTAAA
FD960473       --> ................ATCCAATTATTATTCTTTTGTTTTATTCTTTAAA
EX759683       --> ..................CCAATTATTATTCTTTTGTTTTATTCTTTGAA

               51     -    101
UN20078        --> CATTCTTTAAAAAAGTAGTACTTGATGTTACATAAGCTTTTGATTGGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538179       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527154       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD964484       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX755653       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901063       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY901306       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV540966       --> CATTCTTTAAAAAAGTAATACTTGATGTTACATAAGCTTTTGATTGGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542252       --> CATTCTTTAAAAAAGTAGTACTTGATGTTACATAAGCTTTTGATTGGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531464       --> CATTCTTTAAAAAAGTAGTACTTGATGTTACATAAGCTTTTGATTG--AA  Raphanus raphanistrum subsp. maritimus
EY896649       --> CATTCTTTAAAAAAGTAGTACTTGATGTTACATAAGCTTTTGATTG--AA  Raphanus raphanistrum subsp. maritimus
FD960473       --> CATTCTTTAAAAAAGTAGTACTTGATGTTACACAAGCTTTTGATTG--AA  Raphanus raphanistrum subsp. maritimus
EX759683       --> CATTCTTTAAAAAAGTAGTACTTGATGTTACATAAGCTTTTGATTGGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)

               101    -    151
UN20078        --> AAAAACAAACAAAAAGTTAATTATTTATTTAACTTTTTAAATACTCGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- ..................................................
EV538179       <-- ..................................................
EV527154       <-- ..................................................
FD964484       <-- ..................................................
EX755653       <-- ..................................................
EY901063       <-- ..................................................
EY901306       <-- ..................................................
EV540966       --> AAAAACAAACAAAAAGTTAATTATTTATTTAACTTTTTAAATACTCCACC
EV542252       --> AAAAACAAACAAAAAGTTAATTATTTATTTAACTTTTTAAATACTCGACC
EV531464       --> AAAAACAAACAAAAAGTTAATTATTTATTTAACTTTTTAAATACTCGACC
EY896649       --> AAAAACAAACGAAAAGTTAATTATTTATTTAACTTTTTAAATACTCGACC
FD960473       --> AAAAACAAACAAAAAGTTAATTATTTATTTAACTTTTTAAATACTCGACC
EX759683       --> AAAAACAAACAAAAAGTTAATTATTTATTTAACTTTTTAAATACTCGACC

               151    -    201
UN20078        --> GGCTTGTTAATAAAAGGATAAAACTCAAACCTAAAAGTACAGCTCGTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- .....................................TACAGCT-GTACC
EV538179       <-- ..................................................
EV527154       <-- ..................................................
FD964484       <-- ..................................................
EX755653       <-- ..................................................
EY901063       <-- ..................................................
EY901306       <-- ..................................................
EV540966       --> GGCTTGTTAATAAAAGGATAAAACTCAAACCTAAAAGTACAGCTTGTACC
EV542252       --> GGCTTGTTAATAAAAGGATAAAACTCAAACCTAAAAGTACAGCTTGTACC
EV531464       --> GGCTTGTTAATAAAAGGATAAAACTCAAACCTAAAAGTACAGCTCGTACC
EY896649       --> GGCTTGTTAATAAAAGGATAAAACTCAAACCTAAAAGTACAGCTCGTACC
FD960473       --> GGCTTGTTAATAAAAGGATAAAACTCAAACCTAAAAGTACAGCTCGTACC
EX759683       --> GGCTTGTTAATAAAAGGATAAAACTCAAACCTAAAAGTACAGCTCGTACC

               201    -    251
UN20078        --> CACAAATCTCGCTCCTCGTTTATCATTCAAGCAATCTTGAAAATGCAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- CACAAATCTCGCTC-TCGTT-ATCAT-C-AGCAATCT-GAAAATGCAAC-
EV538179       <-- ..................................................
EV527154       <-- ..................................................
FD964484       <-- ..................................................
EX755653       <-- ..................................................
EY901063       <-- ..................................................
EY901306       <-- ..................................................
EV540966       --> CCCAAATCT.........................................
EV542252       --> CACAAATCTCGCTCCTCGTTTATCATTCAAGCAATCTTGAAAATGCAACC
EV531464       --> CACAAATCTCGCTCCTCGTTTATCATTCAAGCAATCTTGAAAATGCAACC
EY896649       --> CACAAATCTCGCTCCTCGTTTATCATTCAAGCAATCTTGAAAATGCAACC
FD960473       --> CACAAATCTCGCTCCTCGTTTATCATTCAAGCAATCTTGAAAATGCAACC
EX759683       --> CACAAATCTCGCTCCTCGTTTATCATTCAAGCAATCTTGAAAATGCAACC

               251    -    301
UN20078        --> TATTGAAAACCAAACACTCTTCACAAGCTTGTGGTGATATGTCTTTGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- TA-TGAAAACCAAACACTCTTCACAAGCTTGTGGTGATATGTCTTTGGTA
EV538179       <-- .....AAAACCAAACACTCTTCACAAGCTTGTGGTGATATGTCTTTGGTA
EV527154       <-- ..................................................
FD964484       <-- ..................................................
EX755653       <-- ..................................................
EY901063       <-- ..................................................
EY901306       <-- ..................................................
EV540966       --> ..................................................
EV542252       --> TATTGAAAACCAAACACTCTTCACAAGCTTGTGGTGATATGTCTTTGGTA
EV531464       --> TATTGAAAACCAAACACTCTTCACAAGCTTGTGGTGATATGTCTTTGGTA
EY896649       --> TATTGAAAACCAAACACTCTTCACAAGCTTGTGGTGATATGTCTTTGGTA
FD960473       --> TATTGAAAACCAAACACTCTTCACAAGCTTGTGGTGATATGTCTTTGGTA
EX759683       --> TATTGAAAACCAAACACTCTTCACAAGCTTGTGGTGATATGTCTTTCGTA

               301    -    351
UN20078        --> CACTGCACCATTCCATAAATTGTATCACCCTTGAACCGAGTCTCCCCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- CACTGCACCATTCCATAAATTGTATCACCCTTGAACCGAGTCTCCCCCAC
EV538179       <-- CACTGCACCATTCCATAAATCGTATCACCCTTGAACCGAGTCTCCCCCAC
EV527154       <-- .........ATTCCATAAATTGTATCACCCTTGAACCGAGTCTCCCCCAC
FD964484       <-- ............................................CCCCAC
EX755653       <-- ..................................................
EY901063       <-- ..................................................
EY901306       <-- ..................................................
EV540966       --> ..................................................
EV542252       --> CACTGCACCATTCCATAAATCGTATCACCCTTGAACCGAGTCTCCCCCAC
EV531464       --> CACTGCACCATTCCATAAATTGTATCACCCTTGAACCGAGTCTCCCCCAC
EY896649       --> CACTGCACCATTCCATAAATTGTATCACCCTTGAACCGAGTCTCCCCCAC
FD960473       --> CACTGCACCATTCCATAAATTGTATCACCCTTGAACCGAGTCTCCCCCAC
EX759683       --> CACTGCACCATTCCATAAATTGTATCACCCTTGAACCGAGTCTCCCCCAC

               351    -    401
UN20078        --> AGAGTATAATGCTGTTGGCTGACTGTAGTTAACTTGACTGAGGGCTAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- AGAGCATAATGCTGTTGGCTGACTGTAGTTAACTTGACTGGGGGCTAACG
EV538179       <-- AGAGTATAATGCTGTTGGCTGACTGTAGTTAACTTGACTGAGGGCTAACG
EV527154       <-- AGAGTATAATGCTGTTGGCTGAGTGTAGTTAACTTGACTGAGGGCTAACG
FD964484       <-- AGAGTATAATGCTGTTGGCTGACTGTAGTTAACTTGACTGAGGGCTAACG
EX755653       <-- ......................CTGTAGTTGACTTGACTGAGGGCTAACG
EY901063       <-- .................................TTGACTGAGGGCTAACG
EY901306       <-- ..................................................
EV540966       --> ..................................................
EV542252       --> AGAGTATAATGCTGTTGGCTGACTGTAGTTAACTTGACTGAGGGCTAACG
EV531464       --> AGAGTATAATGCTGTTGGCTGAGTGTAGTTAACTTGACTGAGGGCTAACG
EY896649       --> AGAGTATAATGCTGTTGGCTGAGTGTAGTTAACTTGACTGAGGGCTAACG
FD960473       --> AGAGTATAATGCTGTTGGCTGACTGTAGTTAACTTGACTGAGGGCTAACG
EX759683       --> AGAGTATAATGCTGTTGGCCGACTGTAGTTGACTTGACTGAGGGCTAACG

               401    -    451
UN20078        --> TCGTCAGATTGTCCATGAGAGTATTCCAAACACTTGCAAACCCGAGTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- TCGTCAGATTGTCCATGAGAGTATTCCAAACACTTGCAAACCCGAGTTTA
EV538179       <-- TCGTCAGATTGTCCATGAGAGTATTCCAAACACTTGCAAACCCGAGTTTA
EV527154       <-- TCGTCAGATTGTCCATGAGAGTATTCCAAACACTTGCAAACCCGAGTTTA
FD964484       <-- TCGTCAGATTGTCCATGAGAGTATTCCAAACACTTCCAAACCCGAGTTTA
EX755653       <-- TCGTCAGATTGTCCATGAGAGTATTCCAAACACTTCCAAACCCGAGTTTA
EY901063       <-- TCGTCAGATTGTCCATGAGAGTATTCCAAACACTTCCAAACCCGAGTTTA
EY901306       <-- ..................................................
EV540966       --> ..................................................
EV542252       --> TCGTCAGATTGTCCATGAGAGTATTCCAAACACTTGCAAACCCGAGTTTA
EV531464       --> TCGTCAGATTGTCCATGAGAGTATTCCAAACACTTGCAAACCCGAGTTTA
EY896649       --> TCGTCAGATTGTCCATGAGAGTATTCCAAACACTTGCAAACCCGAGTTTA
FD960473       --> TCGTCAGATTGTCCATGAGAGTATTCCAAACACTTCCAAACCCGAGTTTA
EX759683       --> TCGTCAGATTGTCCATGAAAGTATTCCAAACACTTCCAAACCCGAGTTTA

               451    -    501
UN20078        --> TCTCCCAACTTCTTTGCGTTGGACATACAAAAGATATTGTCGTAATCGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- TCTCCCAACTTCTTTGCGTTGGACATACAAAAGATATTGTCGTAATCGAT
EV538179       <-- TCTCCCAACTTCTTTGCGTTGGACATACAAAAGATATTGTCGTAATCGAT
EV527154       <-- TCTCCCAACTTCTTTGCGTTGGACATACAAAAGATATTGTCGTAATCGAT
FD964484       <-- TCTCCCAACTTCTTTGCGTTGGACATACAAAAGATATTTTCGTAATCGAT
EX755653       <-- TCTCCCAACTTCTTTGCGTTGGACATACAAAAGATATTTTCGTAATCGAT
EY901063       <-- TCTCCCAACTTCTTTGCGTTGGACATACAAAAGATATTTTCGTAATCGAT
EY901306       <-- .................................................T
EV540966       --> ..................................................
EV542252       --> TCTCCCAACTTCTTTGCGTTGGACATACAAAAGATATTGTCGTAATCGAT
EV531464       --> TCTCCCAACTTCTTTGCGTTGGACATACAAAAGATATTGTCGTAATCGAT
EY896649       --> TCTCCCAACTTCTTTGCGTTGGACATACAAAAGATATTGTCGTAATCGAT
FD960473       --> TCTCCCAACTTCTTTGCGTTGGACATACAAAAGATATTTTCGTAATCGAT
EX759683       --> TCTCCCAACTTCTTTGCGTTGGACATACAAAAAATATTTTCGTAATCGAT

               501    -    551
UN20078        --> CTTTCCAGTAGCATATGTGGACGAAAACGAGAGAAGACATTGGTCATACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- CTTTCCAGTAGCATATGTGGACGAAAACGAGAGAAGACATTGGTCATACC
EV538179       <-- CTTTCCAGTAGCATATGTGGACGAAAACGAGAGAAGACATTGGTCATACC
EV527154       <-- CTTTCCAGTAGCATATGTGGACGAAAACGACAGAAGACATTGGTCATACC
FD964484       <-- CTTTCCAGTAGCATATGTGGACGAAAACGAGAGAAGACATTGGTCATACC
EX755653       <-- CTTTCCAGTAGCATATGTGGACGAAAACGAGAGAAGACATTGGTCATACC
EY901063       <-- CTTTCCAGTAGCATATGTGGACGAAAACGAGAGAAGACATTGGTCATACC
EY901306       <-- CTTTCCAGTAGCATATGTGGACGAAAACGACAGAAGACATTGGTCATACC
EV540966       --> ..................................................
EV542252       --> CTTTCCAGTAGCATATGTGGACGAAAACGAGAGAAGACATTGGTCATACC
EV531464       --> CTTTCCAGTAGCATATGTGGACGAAAACGACAGAAGACATTGGTCATACC
EY896649       --> CTTTCCAGTAGCATATGTGGACGAAAACGACAGAAGACATTGGTCATACC
FD960473       --> CTTTCCAGTAGCATATGTGGACGAAAACGAGAGAAGACATTGGTCATACC
EX759683       --> CTTTCCAGTAGCA.....................................

               551    -    601
UN20078        --> ATACTATTCTCCCCTTATACCACGGACATCTCTTACGAAGCACAGCCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- ATACTATTCTCCCCTTATACCACGGACATTTCTTACGAAGCACAGCCATG
EV538179       <-- ATACTATTCTCCCCTTATACCACGGACATTTCTTAAGAAGCACAGCCATG
EV527154       <-- ATACTATTCTCCCCTTATACCACGGACATCTCTTACGAAGCACAGCCATG
FD964484       <-- ATACTATTCTCCCCCTATACCACGGACATCTCTTACGAAGCACAGCCATG
EX755653       <-- ATACTATTCTCCCCTTATACCACGGACATCTCTTACGAAGCACAGCCATG
EY901063       <-- ATACTATTCTCCCCCTATACCACGGACATCTCTTACGAAGCACAGCCATG
EY901306       <-- ATACTATTCTCCCCTTATACCACGGACATCTCTTACGAAGCACAGCCATG
EV540966       --> ..................................................
EV542252       --> ATACTATTCTCCCCTTATACCACGGACATTTCTTACGAAGCACAGCCATG
EV531464       --> ATACTATTCTCCCCTTATACCACGGACATCTCTTACGAAGCACAGCCATG
EY896649       --> ATACTATTCTCCCCTTATACCACGGACATCTCTTACGAAGCACAGCCATG
FD960473       --> ATACTATTCTCCCCCTATACCACGGACATCTCTTACGAAGCACAGCCATG
EX759683       --> ..................................................

               601    -    651
UN20078        --> GAGGTGGCAAAGCAGTCGCGGCATTTGGGGCCATAGGAATCGCCACGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- GAGGTGGCAAAGCAGTCGCGGCATTTGGGGCCATAGGAATCGCCACGGCA
EV538179       <-- GAGGTGGCAAAGCAGTCGCGGCATTTGGGGCCATAGGAATCGCCACGGCA
EV527154       <-- GAGGTGGCAAAGCAGTCGCGGCATTTGGGGCCATAGGAATCGCCACGGCA
FD964484       <-- GAGGTGGCAAAGCAGTCGCGGCATTTGGGGCCATAGGAATCGCCACGGCA
EX755653       <-- GAGGTGGCAAAGCAGTCGCGGCATTTGGGGCCATAGGAATCGCCACGGCA
EY901063       <-- GAGGTGGCAAAGCAGTCGCGGCATTTGGGGGCATAGGAATCGCCACGGCA
EY901306       <-- GAGGTGGCAAAGCAGTCGCGGCATTTGGGGCCATAGGAATCGCCACGGCA
EV540966       --> ..................................................
EV542252       --> GAGGTGGCAAAGCAGTCGCGGCATTTGGGGCCATAGGAATCGCCACGGCA
EV531464       --> GAGGTGGCAAAGCAGTCGCGGCATTTGGGGCCATAGGAATCGCCACGGCA
EY896649       --> GAGGTGGCAAAGCAGTCGCGGCATTTGGGGC...................
FD960473       --> GAGGTGGCAAAGCAGTCGCGGCATTTGGGGCCATAGGAATCGCCACGGCA
EX759683       --> ..................................................

               651    -    701
UN20078        --> CTGAAGGATAGCGGATAAGTCATCAGAGCCGAGCAGAGCGAAACCTGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- CTGAAGGATAGCCGATAAGTCATCAGAGCCGAGCAGAGCGAAACCTGGTT
EV538179       <-- CTGAAGGATAGCGGATAAGTCATCAGAGCCGAGCAGAGCGAAACCTGGTT
EV527154       <-- CTGAAGGATAGCGGATAAGTCATCAGAGCCGAGCAGAGCGAAACCTGGTT
FD964484       <-- CTGAAGGATAGCGGATAAGTCATCAGAGCCGAGCAGAGCGAAACCTGGTT
EX755653       <-- CTGAAGGATAGCGGATAAGTCATCAGAGCCGAGCAGAGCGAAACCTGGTT
EY901063       <-- CTGAAGGATAGCGGATAAGTCATCAGAGCCGAGCAGAACGAAACCTGGTT
EY901306       <-- CTGAAGGATAGCGGATAAGTCATCAGAGCCGAGCAGAGCGAAACCTGGTT
EV540966       --> ..................................................
EV542252       --> CTGAAGGATAGCGGATAAGTCATCAGAGCCGAGCAGAGCGAAACCTGGTT
EV531464       --> CTGAAGGATAGCGGATAAGTCATCAGAGCCGAGCAGAGCGAAACCTGGTT
EY896649       --> ..................................................
FD960473       --> CTGAAGGATAGCGGATAAGTCATCAGAGCCGAGCAGAGCG..........
EX759683       --> ..................................................

               701    -    751
UN20078        --> TATCGTTACTGTTTTTATAGAACATTCTTATGACTTTTTTTAAAAGTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- TATCGTTACTGTTTTTATAGAACATTCTTATGACTTTTTTTAAAAGTTCC
EV538179       <-- TATCGTTACTGTTTTTATAGAACATTCTTATGACTTTTTTTAAAAGTTCC
EV527154       <-- TATCGTTACTGTTTTTATAGAACATTCTTATGACTTTTTTTAAAAGTTCC
FD964484       <-- TATCGTTACTGTTTTTATAGAACATTCTTATGACTTTTTTTAAAAGTTCC
EX755653       <-- TATCGTTACTGTTTTTATAGAACATTCTTATGACTTTTTTTAAAAGTTCC
EY901063       <-- TATCGTTACTGTTTTTATAGAACATTCTTATGACTTTTTTTAAAAGTTCC
EY901306       <-- TATCGTTACTGTTTTTATAGAACATTCTTATGACTTTTTTTAAAAGTTCC
EV540966       --> ..................................................
EV542252       --> TATCGTTACTGTTTTTATAGAACATTCTTATGACTTTTTTTAAAAGTTCC
EV531464       --> TATCGTTACTGTTTTTATAGAACATTCTTATGACTTTTTTTAAAAGTTCC
EY896649       --> ..................................................
FD960473       --> ..................................................
EX759683       --> ..................................................

               751    -    801
UN20078        --> TGGTAATCGCTTCCCGGCTTGTATTTTCCTTGACTATCCAAGCATTTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- TGGTAATCGCTTCCCGGCTTATATTTTCCTTGACTATCCAAGCATTTGTG
EV538179       <-- TGGTAATCGCTTCCCGGCTTATATTTTCCTTGACTATCCAAGCATTTGTG
EV527154       <-- TGGTAATCGCTTCCCGGCTTGTATTTTCCTTGACTATCCAAGCATTTGTG
FD964484       <-- TGGTAATCGCTTCCCGGCTTGTATTTTCCTTGACTATCCAAGCATTTGTG
EX755653       <-- TGGTAATCGCTTCCCGGCTTGTATTTTCCTTGACTATCCAAGCATTTGTG
EY901063       <-- TGGTAATCGCTTCCCGGCTTGTATTTTCCTTGACTATCCAAGCATTTGTG
EY901306       <-- TGGTAATCGCTTCCCGGCTTGTATTTTCCTTGACTATCCAAGCATTTGTG
EV540966       --> ..................................................
EV542252       --> TGGTAATCGCTTCCCGGCTTATATTTTCCT....................
EV531464       --> TGGTAATCGCTTCCCGGCTTGTATTTTCCTTGACTATCCAAGCATTTGTG
EY896649       --> ..................................................
FD960473       --> ..................................................
EX759683       --> ..................................................

               801    -    851
UN20078        --> GTTGAGATACGCATTTGTAGTGTTTAAGGACAATTTGCCGCTTATAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- GTTGAGATACGCATTTGTAGTGTTTAAGGACAATTTGCTGCTTATAAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538179       <-- GTTGAGATACGCATTTGTAGTGTTTAAGGACAATTTGCTGCTTATAAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527154       <-- GTTGAGATACGCATTTGTAGTGTTTAAGGACAATTTGCCGCTTATTAAGA  Raphanus raphanistrum subsp. maritimus
FD964484       <-- GTTGAGATACGCATTTGTAGTGTTTAAGGACAATTTGCCGCTTATAAAGA  Raphanus raphanistrum subsp. maritimus
EX755653       <-- GTTGAGATACGCATTTGTAGTGTTTAAGGACAATTTGCTGCTTATAAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901063       <-- GTTGAGATACGCATTTGTAGTGTTTAAGGACAATTTGCCGCTTATAAAGA  Raphanus raphanistrum subsp. maritimus
EY901306       <-- GTTGAGATACGCATCTGTAGTGTTTAAGGACAATTTGCCGCTTATTAAGA  Raphanus raphanistrum subsp. maritimus
EV540966       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542252       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531464       --> GTTGAGATACGCATTTGTAGTGTTTAAG-ACAATTTGCCGCTTATTAAGA  Raphanus raphanistrum subsp. maritimus
EY896649       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD960473       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX759683       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               851    -    901
UN20078        --> GAAGTTGTATGGCTAAGACATGAATCAAAATGAGGCGTTTTGATACAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- GAAGTTGTATGGCTAAGACATGAATCAAAATGAGGCGTTTTGATACAGAT
EV538179       <-- GAAGTTGTATGGGTAAGACATGAATCAAAATGAGGCGTTTTGATACAGAT
EV527154       <-- GAAGTTGTATGGCTAAGACATGAATCAAAATGAGGCGTTTTGATA-AGAT
FD964484       <-- GAAGTTGTATGGCTAAGACATGAATCAAAATGAGGCGTTTTGATACAGAT
EX755653       <-- GAAGTTGTATGGCTAAGACATGAATCAAAATGAGGCGTTTTGATACAGAT
EY901063       <-- GAAGTTGTATGGCTAAGACATGAATCAAAATGAGGCGTTTTGATACAGAT
EY901306       <-- GAAGTTGTATGGCTAAGACATGAATCAAAATGAGGCGTTTTGATACAGAT
EV540966       --> ..................................................
EV542252       --> ..................................................
EV531464       --> GAAGTTGTATGGCTAAGACATGAATCAAA-TGA-GCGTTTTGATA--GAT
EY896649       --> ..................................................
FD960473       --> ..................................................
EX759683       --> ..................................................

               901    -    951
UN20078        --> GATGAAGAGTACATTGTTCTGATTTATTTTTCTCAAAGAGGATTTTTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- GATGAAGAGTACATTGTTCTGATTTATTTTTGTCAAAGAGGATTTTTTCT
EV538179       <-- GATGAAGAGTACATTGTTCTGATTTATTTTTGTCAAAGAGGATTT.....
EV527154       <-- GATGAAGAGTACATTGTTCTGATTTATTTTTCTCAAAGAGGATTTTTTCT
FD964484       <-- GATGAAGAGTACATAGTTCTGATTTATTTTTCTCAAAGAGGATTTTTTCT
EX755653       <-- GATGAAGAGTACATTGTTCTGATTTATTTTTCTCAAAGAGGATTTTTTCT
EY901063       <-- GATGAAGAGTACATAGTTCTGATTTATTTTTCTCAAAGAGGATTT.....
EY901306       <-- GATGAAGAGTACATTGTTCTGATTTATTTTTCTCAAAGAGGATTTTTTCT
EV540966       --> ..................................................
EV542252       --> ..................................................
EV531464       --> GATGAAGAGTACA.....................................
EY896649       --> ..................................................
FD960473       --> ..................................................
EX759683       --> ..................................................

               951    -   1001
UN20078        --> AGATGATTAGTTGGGACTGATGTTTATGTAAGACTCAACAGGTATATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- AGATGATTCGTTGGGACTGATGTTTATGTAAGACTCAACAGGTATGTGAT
EV538179       <-- ..................................................
EV527154       <-- AGATGATTAGTTGGGACTGATGTTTATGTAAGACTCAACAGGTATATGAT
FD964484       <-- AGATGATTCGTTGGGACTGATGTTTATGTAAGACTCAACAGGTATGTGAT
EX755653       <-- AGATGATTAGTTGGGACTGATGTTTATGTAAGACTCAACAGATATATGAT
EY901063       <-- ..................................................
EY901306       <-- AGATGATTAGTTGGGACTGATGTTTATGTAAGACTCAACAGGTATATGAT
EV540966       --> ..................................................
EV542252       --> ..................................................
EV531464       --> ..................................................
EY896649       --> ..................................................
FD960473       --> ..................................................
EX759683       --> ..................................................

               1001   -   1051
UN20078        --> GTTTATATATATAATATAT--TTTT-CTGGTTACCCAGTTCGCAATTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV536541       <-- GTTTATATATATAATATAT--TTTT-CTGGTTACCCAGTTCGCAATTTGT
EV538179       <-- ..................................................
EV527154       <-- GTTTATATATATAATATATATTTTTCCTGGTTACCCAGTTCGCAATTTGT
FD964484       <-- GTTTATATATATAATATAT--TTTT-CTGGTTACCCAGTTCGCAATTTGT
EX755653       <-- GTTTATACATATAATATAT--TTTT-CTGGTTACCCAGTTCGCAATTTG.
EY901063       <-- ..................................................
EY901306       <-- GTTTATATATATAATATATATTTTTCCTGGTTACCCAGTTCGCAATTTGT
EV540966       --> ..................................................
EV542252       --> ..................................................
EV531464       --> ..................................................
EY896649       --> ..................................................
FD960473       --> ..................................................
EX759683       --> ..................................................

               1051   -   1101
UN20078        --> TTGAAAGGTCCC
                   ~~~~~~~~~~~~
EV536541       <-- TTGAAAGGTCCC
EV538179       <-- ............
EV527154       <-- TTc.........
FD964484       <-- TTGAAAGGTCC.
EX755653       <-- ............
EY901063       <-- ............
EY901306       <-- TTcc........
EV540966       --> ............
EV542252       --> ............
EV531464       --> ............
EY896649       --> ............
FD960473       --> ............
EX759683       --> ............