1      -     51
UN20083        --> GGCCAGCTCGTTACTCTCAAGGCTAAAGCCAAGGAGGATGGCAACACCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- ..................................................
FD976412       <-- ..................................................
FD960213       <-- ..................................................
FD980538       --> GGCCAGCTCGTTACTCTCAAGGCTAAAGCCAAGGAGGATGGCAACACCGT
FD544055       --> ............................gCAAGGAGGATGGCAACACCGT
FD972107       --> ..................................................
FD964098       --> ..................................................
EY900478       --> ..................................................

               51     -    101
UN20083        --> TAGCTACAGCTCCTACGAGATGTTGGCTGGTCATGTTTGGAGGTCTGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- ..................................................
FD976412       <-- ..................................................
FD960213       <-- ..................................................
FD980538       --> TAGCTACAGCTCCTACGAGATGTTGGCTGGTCATGTTTGGAGGTCTGTGG
FD544055       --> TAGCTACAGCTCCTACGAGATGTTGGCTGGTCATGTTTGGAGGTCTGTGG
FD972107       --> ..................................................
FD964098       --> ..................................................
EY900478       --> ..................................................

               101    -    151
UN20083        --> GTAAGGCCCGCGGGCTTCCCGACGATCAAGAGACCAAACTGTACATTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- ..................................................
FD976412       <-- ..................................................
FD960213       <-- ..................................................
FD980538       --> GTAAGGCCCGCGGGCTTCCCGACGATCAAGAGACTAAACTGTATATTGCT
FD544055       --> GTAAGGCCCGCGGGCTTTCCGACGATCAAGAGACCAAACTGTACATTGCT
FD972107       --> .gAAGGCCCGCGGGCTTCCCGACGATCAAGAGACCAAACTGCACATTGCT
FD964098       --> ..................................................
EY900478       --> ..................................................

               151    -    201
UN20083        --> ACCGACGGAAGGTCGAGACTTCGTCCGCAGCTTCCCCCTGGTTACTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- ..................................................
FD976412       <-- ..................................................
FD960213       <-- ..................................................
FD980538       --> ACCGATGGAAGGTCGAGACTTCGTCCGCAGCTTCCCCCTGGTTACTTTGG
FD544055       --> ACCGACGGAAGGTCGAGACTTCGTCCGCAGCTTCCCCCTGGTTACTTTGG
FD972107       --> ACCGACGGAAGGTCGAGACTTCGTCCGCAGCTTCCCCCTGGTTACCTTGG
FD964098       --> ..................................................
EY900478       --> ..................................................

               201    -    251
UN20083        --> TAACGTGATATTCACTGCCACGCCACTGGCCGTTGCAGGGGATCTGCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- ..................................................
FD976412       <-- ..................................................
FD960213       <-- ..................................................
FD980538       --> TAACGTGATATTCACTGCCACGCCACTGGCCGTTGCAGAGGATCTGCTAT
FD544055       --> TAACGTGATATTCACTGCCACGCCACTGGCCGTTGCAGGGGATCTGCTAT
FD972107       --> TAACGTGATATTCACTGCCACGCCACTGGCCGTTGCAGGGGATCTGCTAT
FD964098       --> ..................................................
EY900478       --> ..................................................

               251    -    301
UN20083        --> CGAAACCGACGTGGTATGCTGCAGGACTGATTCATGATGTTTTGGCTCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- ..............................TTCATGATGTTTTGGCTCGC
FD976412       <-- ..................................................
FD960213       <-- ..................................................
FD980538       --> CGAAACCGACGTGGTATGCTGCAGGACTGATTCGTGATGTTT-GGCTCGC
FD544055       --> CGAAACCGACGTGGTATGCTGCAGGACTGATTCATGATGTTTTGGCTCGC
FD972107       --> CGAAACCGACGTGGTATGCTGCAGGACTGATTCATGATGTTTTGGCTCGC
FD964098       --> ..................................................
EY900478       --> ..................................................

               301    -    351
UN20083        --> ATGGACGATAACTATCTGAGGTCAGCTCTCGACTACCTGGAGATGCAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- ATGGACGATAACTATCTGAGGTCAGCTCTCGACTACCTGGAGATGCAGCC
FD976412       <-- ..................................................
FD960213       <-- ..................................................
FD980538       --> ATGGACTATAACTATCTGAGGTCAGCTCTCGACTACCTGGAGATGCAGCC
FD544055       --> ATGGACGATAACTATCTGAGGTCAGCTCTCGACTACCTGGAGATGCAGCC
FD972107       --> ATGGACGATAACTATCTGAGGTCAGCTCTCGACTACCTGGAGATGCAGCC
FD964098       --> ..................................................
EY900478       --> ..................................................

               351    -    401
UN20083        --> CGATCTCTCGGCTTTGGTCCGCGGTGCGCATACGTACAAATGTCCGAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- CGATCTCTCGGCTTTAGTCCGCGGTGCGCATACGTACAAATGTCCGAATT
FD976412       <-- ..............................................AATT
FD960213       <-- ..................................................
FD980538       --> TGATCTCTCGGCTTTGGTCCGCGGTGCGCATACCTACAAATGTCCGAATT
FD544055       --> CGATCTCTCGGCTTTGGTCCGCGGTGCGCATACGTACAAATGTCCGAATT
FD972107       --> CGATCTCTCGGCTTTAGTCCGCGGTGCGCATACGTACAAATGTCCGAATT
FD964098       --> ........................gGCGCATACCTACAAATGTCCGAATT
EY900478       --> ..................................................

               401    -    451
UN20083        --> TGGGAATCACAAGCTGGGTCAGATTGCCTATTTACGATGCAGACTTTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- TGGGAATCACAAGCTGGGTCAGATTGCCTATTTACGATGCAGACTTTGGT
FD976412       <-- TGGGAATCACAAGCTGGGTCAGATTGCCTATTTACGATGCAGACTTTGGT
FD960213       <-- ..................................................
FD980538       --> TGGGAATCACAAGCTGGGTCAGATTGCCTATTTACGATGCAGACTTTGGT
FD544055       --> TGGGAATCACAAGCTGGGTCAGATTGCCTATTTACGATGCAGACTTTGGT
FD972107       --> TGGGAATCACAAGCTGGGTCAGATTGCCTATTTACGATGCAGACTTTGGT
FD964098       --> TGGGAATCACAAGCTGGGTCAGATTGCCTATTTACGATGCAGACTTTGGT
EY900478       --> ..................................................

               451    -    501
UN20083        --> TGGGGACGTCCCATATTTATGGGACCTGGTGGAATTCCATACGAGGGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- TGGGGACGTCCCATATTTATGGGACCTGGTGGAATTCCATACGAGGGTTT
FD976412       <-- TGGGGACGTCCCATATTTATGGGACCTGGTGGAATTCCATACGAGGGTTT
FD960213       <-- ..................................................
FD980538       --> TGGGGACGTCCCATATTTATGGGACCTGGTGGAATTCCATACGAGGGTTT
FD544055       --> TGGGGACGTCCCATATTTATGGGACCTGGTGGAATTCCATACGAGGGTTT
FD972107       --> TGGGGACGTCCCATATTTATGGGACCTGGTGGAATTCCATACGAGGGTTT
FD964098       --> TGGGGACGTCCCATATTTATGGGACCTGGTGGAATTCCATACGAGGGTTT
EY900478       --> ..................................................

               501    -    551
UN20083        --> GTCGTTTGTGCTACCAAGTCCTACAAATGATGGCAGCTTGTCTGTGGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- GTCGTTTGTGCTACCAAGTCCTACAAATGATGGCAGCTTGTCTGTGGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976412       <-- GTCGTTTGTGCTACCAATTCCTACAAATGATGGCAGCTTATCTGTGGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD960213       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD980538       --> GTCGTTTGTGCTACCAATTCCTACAAATGATGGCAGCTTATCTGTGGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544055       --> GTCGTTTGTGCTACCAAGTCCTACAAATGATGGCAGCTTGTCTGTGGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972107       --> GTCGTTTGTGCTACCAAGTCCTACAAATGATGGCAGCTTGTCTGTGGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964098       --> GTCGTTTGTGCTACCAAGTCCTACAAATGATGGCAGCTTATCTGTGGCCA  Raphanus raphanistrum subsp. maritimus
EY900478       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN20083        --> TTGCTCTCCAAACTGAACACATGAAACTGTTTGAGAAGTATTTGTACGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- TTGCTCTCCAAACTGAACACATGAAACTGTTTGAGAAGTATTTGTACGAT
FD976412       <-- CTGCTCTCCAAACTGAACACATGAAACTGTTTGAGAAGTATTTGTACGAT
FD960213       <-- ..................................................
FD980538       --> CTGCTCTCCAAACTGAACACATGAAACTGTTTGAGAAGTATTTGTACGAT
FD544055       --> TTGCTCTCCAAACTGAACACATGAAACTGTTTGAGAAGTATTTGTACGAT
FD972107       --> TTGCTCTCCAAACTGAACACATGAAACTGTTTGAGAAGTATTTGTACGAT
FD964098       --> TTGCTCTCCAAACCGAACACATGAAACTGTTTGAGAAGTATTTGTACGAT
EY900478       --> ..................................................

               601    -    651
UN20083        --> ATATGACAGAGACAAGCAGCAGCAGAACAAGAAGAAGATGATGATGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- ATATGACAGAGACAAGCAGCAGCAGAACAAGAAGAAGATGATGATGATGA
FD976412       <-- ATATGACAGAGACAAGCAGCAGCAGAACAAGAAGAAGATGATGATGATGA
FD960213       <-- ..................................................
FD980538       --> ATATGACAGAGACAAGCAGCAGCAGAACAAGAAGAAGATGATGATGATGA
FD544055       --> ATATGACAGAGACAAGCAGCAGCAGAACAAGAAGAAGATTATGATGATGA
FD972107       --> ATATGACAGAGACAAGCAGCAGCAGAACAAGAAGAAGATGATGATGATGA
FD964098       --> ATATGACAGAGACAAGCAGCAGCAGAACAAGAAGAAGATGATGAT--TCC
EY900478       --> ..................................................

               651    -    701
UN20083        --> TTCCTCCTTTTCCCCCCCCC-ACTTAAGTGGGGCTTTTTTGTTGCTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- TTCCTCCTTTTCCCCCC--C-ACTTAAGTGGGGCTTTTTTGTTGCTTGAT
FD976412       <-- TTCCTCCTTTTCCCCCCCCCCACTTAAGTGGGGCTTTTTTGTTGCTTGAT
FD960213       <-- ...............................................GAT
FD980538       --> TTCCTCCTTTTCCCCCCCCC-ACTTAAGTGGGGCTTTTT-GTTGCTTGAT
FD544055       --> TTCCTCCTTTTCCCCCC----ACTTAAGTGGGGCTTTTTTGTTGCTTGAT
FD972107       --> TTCCTCCTTTTCCCCCCact..............................
FD964098       --> TCCTTTC-CCCCCCCCCCCC-ACTTAAGTGGGGCTTTTTTGTTGCTTGAT
EY900478       --> ..................................................

               701    -    751
UN20083        --> GTCGAAGATGATTCGTTATCCTGTATTTTAGAGGGTACAATAAAGTTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- GTCGAAGATGATTCGTTATCCTGTATTTTAGAGGGTACAATAAAGTTATG
FD976412       <-- GTCGAAGATGATTCGTTATCCTGTATTTTAGAGGGTACAATAAAGTTATG
FD960213       <-- GTCGAAGATGATTCGTTATCCTGTATTTTAGAGGGTACAATAAAGTTATG
FD980538       --> GTCGAAGATGATTCGTTATCCTGTATTTTAGAGG-TACAATAAAGTTATG
FD544055       --> GTCGAAGATGATTCGTTATCCTGT--TTTAGAGGGTACAATAAAGTTATG
FD972107       --> ..................................................
FD964098       --> GTCGAAGATGATTCGTTATCCTGTATTTTAGAGGGTACAATAAAGTTATG
EY900478       --> ....gAGATGATTCGTTATCCTGTATTTTAGAGGGTACAATAAAGTTATG

               751    -    801
UN20083        --> TCAACACATAAGTTTTTCTTATGGTCTGTGTAACATTTGGATCGGTCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- TCAACACATAAGTTTTTCTTATGGTCTGTGTAACATTTGGATCGGTCATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976412       <-- TCAACACATAAGTTTTTCTTATGGTCTGTGTAACATTTGGATCGGTCATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD960213       <-- TCAACACATAAGTGTTTCTTATGGTCTGTGTAACATTTGGATCGGTCATG  Raphanus raphanistrum subsp. maritimus
FD980538       --> TCAACACATAAGTTTTTCTTATGGTCTGTGTAACATTTG...........  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544055       --> TCAACACATAAGTTTTTCTTATGGTCTGTGTAACATTTGGATCGGTCATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972107       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964098       --> TCAACACATAAGTGTTTCTTATGGTCTGTGTAACATTTGGATCGGTCATG  Raphanus raphanistrum subsp. maritimus
EY900478       --> TCAACACATAAGTGTTTCTTATGGTCTGTGTAACATTTGGATCGGTCATG  Raphanus raphanistrum subsp. maritimus

               801    -    851
UN20083        --> TAGGAACTTTTGCTTTTATGTTTATACTGATGATGATAAGTGTTGTCCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- TAGGAACTTTTGCTTTTATGTTTATACTGATGATGATAAGTGTTGTCCT.
FD976412       <-- TAGGAACTTTTGCTTTTATGTTTATACTGATGATGATAAGTGTTGTCC..
FD960213       <-- TAGGAACTTTTGCTTTTATGTTTATACTGATGATGATAAGTGTTGTCCTA
FD980538       --> ..................................................
FD544055       --> T.................................................
FD972107       --> ..................................................
FD964098       --> TAGGAACTTTTGCTTTTATGTTTATACTGATGATGATAAGTGTTGTCCTA
EY900478       --> TAGGAACTTTTGCTTTTATGTTTATACTGATGATGATAAGTGTTGTCCTA

               851    -    901
UN20083        --> TGACACATTACCTTCATAGTTTGGTTATGTCAATGCTTCATCCCCTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- ..................................................
FD976412       <-- ..................................................
FD960213       <-- TGACACATTACCTTCATAGTTTGGTTATGcc...................
FD980538       --> ..................................................
FD544055       --> ..................................................
FD972107       --> ..................................................
FD964098       --> TGACACATTACCTTCATAGTTTGGTTATGcc...................
EY900478       --> TGACACATTACCTTCATAGTTTGGTTATGTCAATGCTTCATCCCCTCTCT

               901    -    951
UN20083        --> TGTCAGTTTTCCTGTAATAACAACTGTTTTGTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD968072       <-- ...................................
FD976412       <-- ...................................
FD960213       <-- ...................................
FD980538       --> ...................................
FD544055       --> ...................................
FD972107       --> ...................................
FD964098       --> ...................................
EY900478       --> TGTCAGTTTTCCTGTAATAACAACTGTTTTGTACT