RadishBase

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Alignment for radish unigene UN20094

               1      -     51
UN20094        --> GTGAACTTGCATGATAATCTTAAAAGACTCAAAACATGGATGAGAGTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- ..................................................
EV566883       <-- ..................................................
EV527960       <-- ..................................................
EX886975       <-- ..................................................
EX898468       <-- ..................................................
FD557707       <-- ..................................................
FD556421       <-- ..................................................
EV548338       <-- ..................................................
FD949117       <-- ..................................................
FD572387       <-- ..................................................
EX903127       <-- ..................................................
FD940797       <-- ..................................................
FD982012       <-- ..................................................
FD944804       --> GTGAACTTGCATGATAATCTCAAAAGACTCAAAACATGGATGAAAGTGAC
FD977666       --> GTGAACTTGCATGATAATCTTAAAAGACTCAAAACATGGATGAGAGTGAC
EX907252       --> .....................................GGATGAGAGTGAC
EX902029       --> ......................................ggTGAGAGTGAC
FD936594       --> .........................................GAGAGTGAC
EV532069       --> ..................................................

               51     -    101
UN20094        --> AACCGTCATTGTACACCAAAAGAAAACAGAGTTTTGTACATTCAAATGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- ............................GAGTTTTGTACATTCAAATGCA
EV566883       <-- ..................................................
EV527960       <-- ..................................................
EX886975       <-- ..................................................
EX898468       <-- ..................................................
FD557707       <-- ..................................................
FD556421       <-- ..................................................
EV548338       <-- ..................................................
FD949117       <-- ..................................................
FD572387       <-- ..................................................
EX903127       <-- ..................................................
FD940797       <-- ..................................................
FD982012       <-- ..................................................
FD944804       --> AACCGTCATTGTACACCAAAAGAAAACAGAGTTTTGTACATTCAAATGCA
FD977666       --> AACCGTCATTGTACACAAAACGAAAACAGAGTTTTGTACATTCAAATGCA
EX907252       --> AACCGTCATTGTACACCAAAAGAAAACAGAGTTTTGTACATTCAAATGCA
EX902029       --> AACCGTCATTGTACACCAAAAGAAAACAGAGTTTTGTACATTCAAATGCA
FD936594       --> AACCGTCATTGTACACCAAAAGAAAACAGAGTTTTGTACATTCAAATGCA
EV532069       --> ..........aTACCCCAAACGGAAACAGAGTTTTTTACATTCGAATGCA

               101    -    151
UN20094        --> TATTGTTCTGTATTATCTGATGCACACAAGAGAGAATAAAATGGTACACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- TATTGTTCTGTATTATCTGATGCACACAAGAGAGAATAAAATGGTACACC
EV566883       <-- ..............................AGAGAATAAAATAGTACACC
EV527960       <-- ..................................................
EX886975       <-- ..................................................
EX898468       <-- ..................................................
FD557707       <-- ..................................................
FD556421       <-- ..................................................
EV548338       <-- ..................................................
FD949117       <-- ..................................................
FD572387       <-- ..................................................
EX903127       <-- ..................................................
FD940797       <-- ..................................................
FD982012       <-- ..................................................
FD944804       --> TATTGTTCTGTATTATCTGATGCACACAAGAAAGAATAAAATGGTACACC
FD977666       --> TATTGTTCTGTAT-ATCTGATGCACACAGGAGAGAATAAAATGGTACACC
EX907252       --> TATTGTTCTGTATTATCTGATGCACACAAGAGAGAATAAAATGGTACACC
EX902029       --> TATTGTTCTGTATTATCTGATGCACACAAGAAAGAATAAAATGGTACACC
FD936594       --> TATTGTTCTGTATTATCTGATGCACACAAGAGAGAATAAAATGGTACACC
EV532069       --> TATTGTTCTGTAT-ATCTGATGCACACAAGAGAGAATAAAATAGTATACC

               151    -    201
UN20094        --> ATCCACTAGCATGTAGTTCTCTAAACGTTTTACAGTAGAGCCGCCGTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- ATCCACTAGCATGTAGTTCTCTAAACGTTTTACAGTAGAGCCGCCGTACT
EV566883       <-- ATCCACTAGTAT---GTTCTCTAAACGTTT-ACAGTAGAGC---CGTACT
EV527960       <-- ......cactagtatGTTCTCTAAACGTTTTACAGTAGAGC---CGTACT
EX886975       <-- ..................................................
EX898468       <-- ..................................................
FD557707       <-- ..................................................
FD556421       <-- ..................................................
EV548338       <-- ..................................................
FD949117       <-- ..................................................
FD572387       <-- ..................................................
EX903127       <-- ..................................................
FD940797       <-- ..................................................
FD982012       <-- ..................................................
FD944804       --> ATCCACTAGCATGTAGTTCTCTAAACGTTTTACAGTAAAGCCGCCGTACT
FD977666       --> ATCCACTAGCATGTAGTTCTCTAAACGTTTTACAGTAGAGGAGCCGTACT
EX907252       --> ATCCACTAGCATGTAGTTCTCTAAACGTTTTACAGTAGAGCCGCCGTACT
EX902029       --> ATCCACTAGCATGTAGTTCTCTAAACGTTTTACAGTAGAGCCGCCGTACT
FD936594       --> ATCCACTAGCATGTAGTTCTCTAAACGTTTTACAGTAAAGCCGCCGTACT
EV532069       --> ATCCACTAGTATGT---TCTCTAAACGTTTTACAGTAGAGCCG---TACT

               201    -    251
UN20094        --> AGTTAGTAGCTCCAACTGTTCGTTTCTGAATAACTCTAGCTCACTAAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- AGTTAGTAGCTCCAACTGTTCGTTTCTGAATAACTCTAGCTCACTAAGGC
EV566883       <-- AGTTAGTAGCTCCAACTGTTCGTT-CTGAATAACTCTAGCTCACTAAGGC
EV527960       <-- AGTTAGTAGCTCCAACTGTTCGTTTCTGAATAACTCTAGCTCACTAAGGC
EX886975       <-- ................................ACTCTAGCTCACTAAGGC
EX898468       <-- ..................................................
FD557707       <-- ..................................................
FD556421       <-- ..................................................
EV548338       <-- ..................................................
FD949117       <-- ..................................................
FD572387       <-- ..................................................
EX903127       <-- ..................................................
FD940797       <-- ..................................................
FD982012       <-- ..................................................
FD944804       --> AGTTAGTAGCTCCAACTGTTCGTTTCTGAATAACTCTAGCTCACTAAGGC
FD977666       --> AGTTAGTAGCTCCAACTGTTCGTTTCTGAATAGCTCTAGCTCACTAAGGC
EX907252       --> AGTTAGTAGCTCCAACTGTTCGTTTCTGAATAACTCTAGCTCACTAAGGC
EX902029       --> AGTTAGTAGCTCCAACTGTTCGTTTCTGAATAACTCTAGCTCACTAAGGC
FD936594       --> AGTTAGTAGCTCCAACTGTTCGTTTCTGAATAACTCTAGCTCACTAAGGC
EV532069       --> AGTTAGTAGCTCCAACTGTTCGTTTCTGAATAACTCTAGCTCACTAAGGC

               251    -    301
UN20094        --> TTAGCGAGTCCGGTACACCATAATCTAAAGGAAACTCAATAGGTAGGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- TTAGCGAGTCCGGTACACCATAATCTAAAGGAAACTCAATAGGTAGGGAC  Raphanus sativus cv GSK3-1
EV566883       <-- TTAGCGAGTCTGGTACGCCATAATCTAAAGGAAACTCAATAGGTAGGGAA  Raphanus raphanistrum subsp. landra
EV527960       <-- TTAGCGAGTCTGGTACGCCATAATCTAAAGGAAACTCAATAGGTAGGGAC  Raphanus raphanistrum subsp. maritimus
EX886975       <-- TTAGCGAGTCCGGTACACCATAATCTAAAGGAAACTCAATAGGTAGGGAC  Raphanus sativus var. oleiformis
EX898468       <-- ................................AACTCAATAGGTAGGGAC  Raphanus sativus cv Early Scarlet Globe
FD557707       <-- .....................................AATAGGTAGGGAC  Raphanus raphanistrum subsp. landra
FD556421       <-- ..........................................GTAGGGAC  Raphanus raphanistrum subsp. landra
EV548338       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949117       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD572387       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX903127       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD940797       <-- ..................................................  Raphanus sativus var. oleiformis
FD982012       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944804       --> TTAACGAGTCCGGTACACCATAATCTAAAGGAAACTCAATAGGTAGGGAC  Raphanus sativus cv Early Scarlet Globe
FD977666       --> TTAGCGAGTCTGGTACACCATAATCTAAAGGAAACTCAATAGGTAGGGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907252       --> TTAGCGAGTCCGGTACACCATAATCTAAAGGAAACTCAATAGGTAGGGAC  Raphanus sativus cv Rat-Tail Radish #3870
EX902029       --> TTAGCGAGTCCGGTACACCATAATCTAAAGGAAACTCAATAGGTAGGGAC  Raphanus sativus cv Early Scarlet Globe
FD936594       --> TTAGCGAGTCCGGTACACCATAATCTAAAGGAAACTCAATAGGTAGGGAC  Raphanus sativus var. oleiformis
EV532069       --> TTAGCGAGTCTGGTACGCCATAATCTAAAGGAAACTCAATAGGTAGGGAC  Raphanus raphanistrum subsp. maritimus

               301    -    351
UN20094        --> TTCCAGTAAAGACTCGGTTTCCACTCCGCTTCTCTCACTACCTTCAACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- TTCCAGTAAAGACTCGGTTTCCACTCCGCTTCTCTCACTACCTTCAACAC
EV566883       <-- TTCCAGTAAAGACTCGGTTTCCACTCCGCTTCTCTCACTACCTTCAACAC
EV527960       <-- TTCCAGTAAAGACTCGGTTTCCACTCCGCTTCTCTCACTACCTTCAACAC
EX886975       <-- TTCCAGTAAAGACTCGGTTTCCACTCCGCTTCTCTCACTAC-TTCAACAC
EX898468       <-- TTCCAGTAAAGACTCGGTTTCCACTCCGCTTCTCTCACTAC-TTCAACAC
FD557707       <-- TTCCAGTAAAGACTCGGTTTCCACTCCGCTTCTCTCACTAC-TTCAACAC
FD556421       <-- TTCCAGTAAAGACTCGGTTTCCACTCCGCTTCTCTCACTACCTTCAACAC
EV548338       <-- .............TCGGTTTCCACTCCGCTTCTCTCACTACCTTCAACAC
FD949117       <-- .............................................tcaac
FD572387       <-- ..................................................
EX903127       <-- ..................................................
FD940797       <-- ..................................................
FD982012       <-- ..................................................
FD944804       --> TTCCAGTAAAGACTCGGTTTCCACTCCGCTTCTCTCACTACCTTCAACAC
FD977666       --> TTCCAGTAAAGACTCGGTTTCCACTCAGCTTCTCTCACTACCTTCAACAC
EX907252       --> TTCCAGTAAAGACTCGGTTTCCACTCCGCTTCTCTCACTACCTTCAACAC
EX902029       --> TTCCAGTAAAGACTCGGTTTCCACTCCGCTTCTCTCACTACCTTCAACAC
FD936594       --> TTCCAGTAAAGACTCGGTTTCCACTCCGCTTCTCTCACTACCTTCAACGC
EV532069       --> TTCCAGTAAAGACTCGGTTTCCACTCCGCTTCTCTCACTACCTTCAACAC

               351    -    401
UN20094        --> CTCCTTCGCCACAATCTCGCTTGCCTTGGCTGTGAAATGGATCCCATCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- CTCCTTCGCCACAATCTCGCTTGCCTTGGCTGTGAAATGGATCCCATCTG
EV566883       <-- CTCCTTCGCCACAATCTCGCTTGCCTTGGCTGTGAAATGGATCCCATCTG
EV527960       <-- CTCCTTCGCCACAATCTCGCTTGCCTTGGCTGTGAAATGGATCCCATCTG
EX886975       <-- CTC-TTCGCCACAATCTCGCTTGC-TTGGCTGTGAAATGGATCCCATCTG
EX898468       <-- CTC-TTCGCCACAATCTCGCTTGC-TTGGCTGTGAAATGGATCCCATCTG
FD557707       <-- CTCTTTCGCCACAATCTCGCTTGCCTTGGCTGTGAAATGGATCCCATCTG
FD556421       <-- CTCCTTCGCCACAATCTCGCTTGC-TTGGCTGTGAAATGGATCCCATCTG
EV548338       <-- CTCCTTCGCCACAATCTCGCTTGCCTTGGCTGTGAAATGGATTCCATCTG
FD949117       <-- actCTTCGCCACAATCTCGCTTGC-TTGGCTGTGAAATGGATCCCATCTG
FD572387       <-- ................TCGCTTGC-TTGGCTGTGAAATGGATCCCATCTG
EX903127       <-- ..............................TGTGAAATGGATCCCATCTG
FD940797       <-- ..................................................
FD982012       <-- ..................................................
FD944804       --> CTCCTTCGCCACAATCTCGCTTGCCTTGGCTGTGAAATGGATCCCATCTG
FD977666       --> CTCCTTTGCCACAATCTCGCTTGCTTTGGCTGTGAAATGGATCCCATCTG
EX907252       --> CTCCTTCGCCACAATCTCGCTTGCCTTGGCTGTGAAATGGATCCCATCTG
EX902029       --> CTCCTTCGCCACAATCTCGCTTGCCTTGGCTGTGAAATGGATCCCATCTG
FD936594       --> CTCCTTCGCCACAATCTCGCTTGCCTTGGCTGTGAAATGGATCCCATCTG
EV532069       --> CTCCTTCGCCACAATCTCGCTTGCCTTGGCTGTGAAATGGATCCCATCTG

               401    -    451
UN20094        --> TGAAGCAGGTGTTCAACCAATCATCTTGTTGCTGTATAACGTTCCAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- TGAAGCAGGTGTTCAACCAATCATCTTGTTGCTGTATAACGTTCCAGAGA
EV566883       <-- TGAAGCAGGTGTTCAACCAATCATCTTGTTGCTGTATAACGTTCCAGAGA
EV527960       <-- TGAAGCAGGTGTTCAACCAATCATCTTGTTGCTGTATAACGTTCCAGAGA
EX886975       <-- TGAAGCAGGTGTTCAACCAATCATCTTGTTGCTGTATAACGTTCCAGAGA
EX898468       <-- TGAAGCAGGTGTTCAACCAATCATCTTGTTGCTGTATAACGTTCCAGAGA
FD557707       <-- TGAAGCAGGTGTTCAACCAATCATCTTGTTGCTGTATAACGTTCCAGAGA
FD556421       <-- TGAAGCAGGTGTTCAACCAATCATCTTGTTGCTGTATAACGTTCCAGAGA
EV548338       <-- TGAAGCAGGTGTTCAACCAATCATCTTGTTGCTGTATAACGTTCCAGAGA
FD949117       <-- TGAAGCAGGTGTTCAACCAATCATCTTGTTGCTGTATAACGTTCCAGAGA
FD572387       <-- TGAAGCAGGTGTTCAACCAATCATCTTGTTGCTGTATAACGTTCCAGAGA
EX903127       <-- TGAAGCAGGTGTTCAACCAATCATCTTGTTGCTGTATAACGTTCCAGAGA
FD940797       <-- ............TCAACCAATCATCTTGTTGCTGTATAACGTTCCAGAGA
FD982012       <-- ..................................................
FD944804       --> TGAAGCAGGGGTTCAACCAATCATCTTGTTGCTGTATAACGTTCCAGAAA
FD977666       --> TGAAGCAGGTGTTCAACCAATCATCTTGTTGCTGTATAACGTTCCAGGGA
EX907252       --> TGAAGCAGGTGTTCAACCAATCATCTTGTTGCTGTATAACGTTCCAGAGA
EX902029       --> TGAAGCAGGGGTTCAACCAATCATCTTGTTGCTGTATAACGTTCCAGAAA
FD936594       --> TGAAGCAGGGGTTCAACCAATCATCTTGTTGCTGTATAACGTTCCAGAAA
EV532069       --> TGAAGCAGGTGTTCAACCAATCATCTTGTTGCTGTATAACGTTCCAGAGA

               451    -    501
UN20094        --> TCAACACATTTCACATGGATCTCACTGCATAGGTTCAACAACGCTTCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- TCAACACATTTCACATGGATCTCACTGCATAGGTTCAACAACGCTTCTGC  Raphanus sativus cv GSK3-1
EV566883       <-- TCAACACATTTCACATCGATCTCACTGCATAGGTTCAACAACGCTTCTGC  Raphanus raphanistrum subsp. landra
EV527960       <-- TCAACACATTTCACATCGATCTCACTGCATAGGTTCAACAACGCTTCTGC  Raphanus raphanistrum subsp. maritimus
EX886975       <-- TCAACACATTTCACATGGATCTCACTGCATAGGTTCAACAACGCTTCTGC  Raphanus sativus var. oleiformis
EX898468       <-- TCAACACATTTCACATGGATCTCACTGCATAGGTTCAACAACGCTTCTGC  Raphanus sativus cv Early Scarlet Globe
FD557707       <-- TCAACACATTTCACATCGATCTCACTGCATAGGTTCAACAACGCTTCTGC  Raphanus raphanistrum subsp. landra
FD556421       <-- TCAACACATTTCACATCGATCTCACTGCATAGGTTCAACAACGCTTCTGC  Raphanus raphanistrum subsp. landra
EV548338       <-- TCAACACATTTCACATCGATCTCACTGCATAGGTTCAACAACGCTTCTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949117       <-- TCAACACATTTCACATGGATCTCACTGCATAGGTTCAACAACGCTTCTGC  Raphanus sativus cv Early Scarlet Globe
FD572387       <-- TCAACACATTTCACATGGATCTCACTGCATAGGTCCAACAACGCTTCTGC  Raphanus sativus cv Early Scarlet Globe
EX903127       <-- TCAACACATTTCACATGGATCTCACTGCATAGGTTCAACAACGCTTCTGC  Raphanus sativus cv Rat-Tail Radish #3870
FD940797       <-- TCAACACATTTCACATGGATCTCACTGCATAGGTTCAACAACGCTTCTGC  Raphanus sativus var. oleiformis
FD982012       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944804       --> TCAACACATTTCACATGGATCTCACTGCATAGGTTCAACAACGCTTCTGC  Raphanus sativus cv Early Scarlet Globe
FD977666       --> TCAACACATTTCACATCGATCTCATTGCATAGGTTCAACAACGCTTCTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907252       --> TCAACACATTTCACATGGATCTCACTGCATAGGTTCAACAACGCTTCTGC  Raphanus sativus cv Rat-Tail Radish #3870
EX902029       --> TCAACACATTTCACATGGATCTCACTGCATAGGTTCAACAACGCTTCTGC  Raphanus sativus cv Early Scarlet Globe
FD936594       --> TCAACACATTTCACATGGATCTCACTGCATAGGTTCAACAACGCTTCTGC  Raphanus sativus var. oleiformis
EV532069       --> TCAACACATTTCACATCGATCTCACTGCATAGGTTCAACAACGCTTCTGC  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN20094        --> ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAAAAA
EV566883       <-- ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAA--A
EV527960       <-- ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAAAAA
EX886975       <-- ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAAAAA
EX898468       <-- ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAAAAA
FD557707       <-- ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAAAAA
FD556421       <-- ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAAAAA
EV548338       <-- ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAAAAA
FD949117       <-- ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAAAAA
FD572387       <-- ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAAAAA
EX903127       <-- ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAAAAA
FD940797       <-- ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAAAAA
FD982012       <-- ..................................................
FD944804       --> ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAAAAA
FD977666       --> ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAAAAA
EX907252       --> ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAAAAA
EX902029       --> ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAAAAA
FD936594       --> ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAAAAA
EV532069       --> ATATGGACGGCAAGCTTCGTTTCTCCGGCCTTTTATTGCATCTCCAAAAA

               551    -    601
UN20094        --> CTAACTCGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- CTAACTCGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus sativus cv GSK3-1
EV566883       <-- CTAACTCGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus raphanistrum subsp. landra
EV527960       <-- CTAACTGGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus raphanistrum subsp. maritimus
EX886975       <-- CTAACTCGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus sativus var. oleiformis
EX898468       <-- CTAACTCGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus sativus cv Early Scarlet Globe
FD557707       <-- CTAACTCGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus raphanistrum subsp. landra
FD556421       <-- CTAACTCGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus raphanistrum subsp. landra
EV548338       <-- CTAACTGGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949117       <-- CTAACTCGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus sativus cv Early Scarlet Globe
FD572387       <-- CTAACTCGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus sativus cv Early Scarlet Globe
EX903127       <-- CTAACTCGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus sativus cv Rat-Tail Radish #3870
FD940797       <-- CTAACTCGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus sativus var. oleiformis
FD982012       <-- .TAACTGGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944804       --> CTAACTCGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus sativus cv Early Scarlet Globe
FD977666       --> CTAACTGGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907252       --> CTAACTCGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus sativus cv Rat-Tail Radish #3870
EX902029       --> CTAACTCGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus sativus cv Early Scarlet Globe
FD936594       --> CTAACTCGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus sativus var. oleiformis
EV532069       --> CTAACTGGATCTGTCTCTCGTTCATTGGTGGTGGAGAGAGGAAAATGACA  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN20094        --> CGGGTCTTGTCTGAAAGGCTCAGAAGATGCTCCCCAATCTTCCTCATGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- CGGGTCTTGTCTGAAAGGCTCAGAAGATGCTCCCCAATCTTCCTCATGTT
EV566883       <-- CGGGTCTTGTCTGAAAGGCTCAGAAGATGCTCCCCAATCCTCCTCATGTT
EV527960       <-- CGGGTCTTGTCTGAAAGGCTCAGAAGATGCTCCCCAATCTTCCTCATGTT
EX886975       <-- CGGGTCTTGTCTGAAAGGCACAGAAGATGCTCCCCAATCTTCCTCATGTT
EX898468       <-- CGGGTCTTGTCTGAAAGGCTCAGAAGATGCTCCCCAATCTTCCTCATGTT
FD557707       <-- CGGGTCTTGTCTGAAAGGCTCGGAAGATGCTCCCCAATCTTCCTCGTGTT
FD556421       <-- CGGGTCTTGTCTGAAAGGCTCAGAAGATGCTCCCCAATCTTCCTCATGTT
EV548338       <-- CGGGTCTTGTCTGAAAGGCTCAGAAGATGCTCCCCAATCTTCCTCATGTT
FD949117       <-- CGGGTCTTGTCTGAAAGGCTCAGAAGATGCTCCCCAATCTTCCTCATGTT
FD572387       <-- CGGGTCTTGTCTGAAAGGCTCAGAAGATGCTCCCCAATCTTCCTCATGTT
EX903127       <-- CGGGTCTTGTCTGAAAGGCTCAGAAGATGCTCCCCAATCTTCCTCATGTT
FD940797       <-- CGGGTCTTGTCTGAAAGGCTCAGAAGATGCTCCCCAATCTTCCTCATGTT
FD982012       <-- CGGGTCTTGTCTGAAAGGCTCAGAAGATGCTCCCCAATCTTCCTCATGTT
FD944804       --> CGGGTCTTGTCTGAAAGG................................
FD977666       --> CGGGTCTTGTCTGAAAGGC...............................
EX907252       --> CGGGTCTTGTCTGAAAGGCTCAGAAGATGCTCCCCAATCTTCCTCATGTT
EX902029       --> CGGGTCTTGTCTGAAAGGCTCAGAA.........................
FD936594       --> CGGGTCTTGTCTGAAAGG................................
EV532069       --> CGGGTCTTGTCTGAAAGGCTCAGAAGATGCTCCCCAATCTTCCTCATGTT

               651    -    701
UN20094        --> GTCAATGAACTCAGAGAGAGGAACATGAGCTCCCTTCCCTGATGGATGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- GTCAATGAACTCAGAGAGAGGAACATGAGCTCCCTTCCCTGATGGATGAG
EV566883       <-- GTCAATGAACTCAGGGATAGGAACATGGGCTCCCTTCCCTGATGGATGAG
EV527960       <-- ATCAATGAACTCAGAGAGAGGAACATGAGCTCCCTTCCCTGATGGATGAG
EX886975       <-- GTCAATGAACTCAGAGAGAGGAACATGAGTTCCCTTCCCTGATGGATGAG
EX898468       <-- GTCAATGAACTCAGAGAGAGGAACATGAGCTCCCTTCCCTGATGGATGAG
FD557707       <-- GTCAATGAACTCAGGGATAGGAACATGGGCTCCCTTCCCTGATGGATGAG
FD556421       <-- GTCAATGAACTCAGGGATAGGAACATGGGCTCCCTTCCCTGATGGATGAG
EV548338       <-- GTCAATGAACTCAGAGAGAGGAACATGAGCTCCCTTCCCTGATGGATGAG
FD949117       <-- GTCAATGAACTCAGAGAGAGGAACATGAGCTCCCTTCCCTGATGGATGAG
FD572387       <-- GTCAATGAACTCAGAGAGAGGAACATGAGCTCCCTTCCCTGATGGATGAG
EX903127       <-- GTCAATGAACTCAGAGAGAGGAACATGAGCTCCCTTCCCTGATGGATGAG
FD940797       <-- GTCAATGAACTCAGAGAGAGGAACATGAGCTCCCTTCCCTGATGGATGAG
FD982012       <-- GTCAATGAACTCAGAGAGAGGAACATGAGCTCCCTTCCCTGATGGATGAG
FD944804       --> ..................................................
FD977666       --> ..................................................
EX907252       --> GTCAATGAACTCAGAGAGAGGAACATGAGCTCCCTTCCCTGATGGATGAG
EX902029       --> ..................................................
FD936594       --> ..................................................
EV532069       --> ATCAATGAACTCAGAGAGAGGAACATGAGCTCCCTTCCCTGATGGATGAG

               701    -    751
UN20094        --> GAGGCATTGAATCATTCCCACCAAAGTAAACTATCACCAAAGAAGGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- GAGGCATTGAATCATTCCCACCAAAGTAAACTATCACCAAAGAAGGTTGT  Raphanus sativus cv GSK3-1
EV566883       <-- GAGGCATTGAATCATTCCCACCGAAGTAAACTATCACCAAAGAAGGTTGT  Raphanus raphanistrum subsp. landra
EV527960       <-- GAGGCATTGAATCATTCCCACCAAAGTAAACTATCACCAAAGAAGGTTGT  Raphanus raphanistrum subsp. maritimus
EX886975       <-- GAGGCATTGAATCATTCCCACCAAAGTAAACTATCACCAAAGAAGGTTGT  Raphanus sativus var. oleiformis
EX898468       <-- GAGGCATTGAATCATTCCCACCAAAGTAAACTATCACCAAAGAAGGTTGT  Raphanus sativus cv Early Scarlet Globe
FD557707       <-- GAGGCATTGAATCATTCCCTCCGAAGTAAACTATCACCAAAGAAGGTTGT  Raphanus raphanistrum subsp. landra
FD556421       <-- GAGGCATTGAATCATTCCCACCGAAGTAAACTATCACCAAAGAAGGTTGT  Raphanus raphanistrum subsp. landra
EV548338       <-- GAGGCATTGAATCATTCCCACCAAAGTAAACTATCACCAAAGAAGGTTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949117       <-- GAGGCATTGAATCATTCCCACCAAAGTAAACTATCACCAAAGAAGGTTGT  Raphanus sativus cv Early Scarlet Globe
FD572387       <-- GAGGCATTGAATCATTCCCACCAAAGTAAACTATCACCAAAGAAGGTTGT  Raphanus sativus cv Early Scarlet Globe
EX903127       <-- GAGGCATTGAATCATTCCCACCAAAGTAAACTATCACCAAAGAAGGTTGT  Raphanus sativus cv Rat-Tail Radish #3870
FD940797       <-- GAGGCATTGAATCATTCCCACCAAAGTAAACTATCACCAAAGAAGGTTGT  Raphanus sativus var. oleiformis
FD982012       <-- GAGGCATTGAATCATTCCCACCGAAGTAAACTATCACCAAAGAAGGTTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944804       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD977666       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907252       --> GAGGCATTGAATCATTCCCACCAAAGTAAACTATCACCAAAGAAGGTTGT  Raphanus sativus cv Rat-Tail Radish #3870
EX902029       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD936594       --> ..................................................  Raphanus sativus var. oleiformis
EV532069       --> GAGGCATTGAATCATTCCCACCAAAGTAAACTATCACCAAAGAAGGTTGT  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN20094        --> ACTACAGCATCCTTTGGGAAGACTTGGTCAAGAACCTTTAAGGCAAATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- ACTACAGCATCCTTTGGGAAGACTTGGTCAAGAACCTTTAAGGCAAATCT
EV566883       <-- ACTACAGCATCCTTTGGGAAGACTTGGTCAAGAACCTTTAAGGCAAATCT
EV527960       <-- ACTACAGCATCCTTTGGGAAGACTTGGTCAAGAACCTTTAAGGCAAATCT
EX886975       <-- ACTACAGCATCCTTTGGGAAGACTTGGTCAAGAACCTTTAAGGCAAATCT
EX898468       <-- ACTACAGCATCCTTTGGGAAGACTTGGTCAAGAACCTTTAAGGCAAATCT
FD557707       <-- ACTACAGCATCCTTTGGGAAGACTTGGTCAAGAACCTTTAAGGCAAATCT
FD556421       <-- ACTACAGCATCCTTTGGGAAGACTTGGTCAAGAACCTTTAAGGCAAATCT
EV548338       <-- ACTACAGCATCCTTTGGGAAGACTTGGTCAAGAACCTTTAAGGCAAATCT
FD949117       <-- ACTACAGCATCCTTTGGGAAGACTTGGTCAAGAACCTTTAAGGCAAATCT
FD572387       <-- ACTACAGCATCCTTTGGGAAGACTTGGTCAAGAACCTTTAAGGCAAATCT
EX903127       <-- ACTACAGCATCCTTTGGGAAGACTTGGTCAAGAACCTTTAAGGCAAATCT
FD940797       <-- ACTACAGCATCCTTTGGGAAGACTTGGTCAAGAACCTTTAAGGCAAATCT
FD982012       <-- ACTACAGCATCCTTTGGGAAGACTTGGTCAAGAACCTTTAAGGCAAATCT
FD944804       --> ..................................................
FD977666       --> ..................................................
EX907252       --> ACTACAGCATCCTTTGGGAAGACTTGGTCAA...................
EX902029       --> ..................................................
FD936594       --> ..................................................
EV532069       --> ACTACAGCATCCTTTGGGAAGACTTGGTCAAGAACCTTTAAGGCAAATCT

               801    -    851
UN20094        --> TGAGTTCCAACCACCGTATCCACGAAGGATAACATCAGCCGTGCGAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- TGAGTTCCAACCACCGTATCCACGAAGGATAACATCAGCCGTGCGAGAGT  Raphanus sativus cv GSK3-1
EV566883       <-- TGAGTTCCAACCACCATATCCACGAAGGATAACATCAGCCGTGCGAGAGT  Raphanus raphanistrum subsp. landra
EV527960       <-- TGAGTTCCAACCACCATATCCACGAAGGATAACATCAGCCGTGCGAGAGT  Raphanus raphanistrum subsp. maritimus
EX886975       <-- TGAGTTCCAACCACCGTATCCACGAAGGATAACATCAGCCGTGCGAGAGT  Raphanus sativus var. oleiformis
EX898468       <-- TGAGTTCCAACCACCGTATCCACGAAGGATAACATCAGCCGTGCGAGAGT  Raphanus sativus cv Early Scarlet Globe
FD557707       <-- TGAGTTCCAACCACCATATCCACGAAGGATAACATCAGCCGTGCGAGAGT  Raphanus raphanistrum subsp. landra
FD556421       <-- TGAGTTCCAACCACCATATCCACGAGGGATAACATCAGCCGTGCGAGAGT  Raphanus raphanistrum subsp. landra
EV548338       <-- TGAGTTCCAACCACCATATCCACGAAGGATAACATCAGCCGTGCGAGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949117       <-- TGAGTTCCAACCACCGTATCCACGAAGGATAACATCAGCCGTGCGAGAGT  Raphanus sativus cv Early Scarlet Globe
FD572387       <-- TGAGTTACAACCACCGTATCCACGAAGGATAACATCAGCCGTGCGAGAGA  Raphanus sativus cv Early Scarlet Globe
EX903127       <-- TGAGTTCCAACCACCGTATCCACGAGGGATAACATCAGCCGTGCGAGAGT  Raphanus sativus cv Rat-Tail Radish #3870
FD940797       <-- TGAGTTCCAACCACCGTATCCACGAAGGATAACATCAGCCGTGCGAGAGT  Raphanus sativus var. oleiformis
FD982012       <-- TGAGTTCCAACCACCATATCCACGAAGGATAACATCAGCCGTGCGAGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944804       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD977666       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907252       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX902029       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD936594       --> ..................................................  Raphanus sativus var. oleiformis
EV532069       --> TGAGTTCCAACCACCATATCCACGAAGGATAACATCAGCCGTGCGAGAGT  Raphanus raphanistrum subsp. maritimus

               851    -    901
UN20094        --> AGACGTCAGCGAGAGTGGCTCCCCAGCCACCATTGCTGAAACTGTACTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- AGACGTCAGCGAGAGTGGCTCCCCAGCCACCATTGCTGAAACTGTACTGA
EV566883       <-- AGACGTCAGCGAGAGTGGCTCCCCAGCCACCATTGCTGAAACTGTACTGA
EV527960       <-- AGACGTCAGCGAGAGTGGCTCCCCAGCCACCATTGCTGAAACTGTACTGA
EX886975       <-- AGACGTCAGCGAGAGTGGCTCCCCAGCCACCATTGCTGAAACTGTACTGA
EX898468       <-- AGACGTCAGCGAGAGTGGCTCCCCAGCCACCATTGCTGAAACTGTACTGA
FD557707       <-- AGACGTCAGCGAGAGTGGCTCCCCAGCCACCATTGCTGAAACTGTACTGA
FD556421       <-- AGACGTCAGCGAGAGTGGCTCCCCAGCCACCATTGCTGAAACTGTACTGA
EV548338       <-- AGACGTCAGCGAGAGTGGCTCCCCAGCCACCATTGCTGAAACTGTACTGA
FD949117       <-- AGACGTCAGCGAGAGTGGCTCCCCAGCCACCATTGCTGAAACTGTACTGA
FD572387       <-- AGACGTCAGCGAGAGTGGCTCCCCAGCCACCATTGCTGAAACTGTACTGA
EX903127       <-- AGACGTCAGCGAGAGTGGCTCCCCAGCCACCATTGCTGAAACTGTACTGA
FD940797       <-- AGACGTCAGCGAGAGTGGCTCCCCAGCCACCATTGCTGAAACTGTACTGA
FD982012       <-- AGACGTCAGCGAGAGTGGCTCCCCAGCCACCATTGCTGAAACTGTACTGA
FD944804       --> ..................................................
FD977666       --> ..................................................
EX907252       --> ..................................................
EX902029       --> ..................................................
FD936594       --> ..................................................
EV532069       --> AGACGTCAGCGAGAGTGGCTCCCCAGCCACCATTGCTGAAACTGTACTGA

               901    -    951
UN20094        --> ACGATTGAAGAACCGAAGAGGACGATTTGAGGTCTTCCTGGTCCAACCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- ACGATTGAAGAACCGAAGAGGACGATTTGA....................
EV566883       <-- ACGATTGAAGAACCGAAGAGGACGATTTGAGGTCTTCCTGGTCCAACCAT
EV527960       <-- ACGATTGAAGAACCGAAGAGGACGATTTGAGGTCTTCCTGGTCCAACCAT
EX886975       <-- ACGATTGAAGAACCGAAGAGGACGATTTGAGGTCTTCCTGGTCCAACCAT
EX898468       <-- ACGATTGAAGAACCGAAGAGGACGATTTGAGGTCTTCCTGGTCCAACCAT
FD557707       <-- ACGATTGAAGAACCGAAGAGGACGATTT--GGTCTTCCTGGTCCAACCAT
FD556421       <-- ACGATTGAAGAACCGAAGAGGACGATTTGAGGTCTTCCTGGTCCAACCAT
EV548338       <-- ACGATTGAAGAACCGAAGAGGACGATTTGAGGTCTTCCTGGTCCAACCAT
FD949117       <-- ACGATTGAAGAACCGAAGAGGACGATTTGAGGTCTTCCTGGTCCAACCAT
FD572387       <-- ACGATTGAAGAACCGAAGAGGACGATTTGAGGTCTTCCTGGTCCAACCAT
EX903127       <-- ACGATTGAAGAACCGAAGAGGACGATTTGAGGTCTTCCTGGTCCAACCAT
FD940797       <-- ACGATTGAAGAACCGAAGAGGACGATTTGAGGTCTTCCTGGTCCAACCAT
FD982012       <-- ACGATTGAAGAACCGAAGAGGACGATTTGAGGTCTACCTGGTCCAACCAT
FD944804       --> ..................................................
FD977666       --> ..................................................
EX907252       --> ..................................................
EX902029       --> ..................................................
FD936594       --> ..................................................
EV532069       --> ACGATTGAAGAACCGAAGAGGACGATTTGAGGTC................

               951    -   1001
UN20094        --> GGCGGCTTTGCTTCCTCTTCTCTCGCCTGGAGAAGGAG---GAACAACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY433937       <-- ..................................................
EV566883       <-- GGCGGCTTTGCTTCCTCTTCTCTCGCCTGGAGAAGGAG---GAACAACAC
EV527960       <-- GGCGGCTTTGCTTCCTCTTCTCTCGCCTc.....................
EX886975       <-- GGCGGCTTTGCTTCCTCTTCTCTCGCCTGGAGAAGGAG---GAACAACAC
EX898468       <-- AGCGGCCTTGCTTCCTCTTCTCTCGCCTGGAGAAGGAG---GAACAACAC
FD557707       <-- GGCGGCTTTGCTTCCTCTTCTCTCGCCTGGAGAAGGAG---GAACAACAC
FD556421       <-- GGCGGCTTCGCTTCCTCTTCTCTCGCCTGGAGAAGGAG---GAACAACAC
EV548338       <-- GGCGGCTTTGCTTCCTCTTCTCTCGCCTGGAGAAGGAG---GAACAACAC
FD949117       <-- GGCGGCTTTGCTTCCTCTTCTCTCGCCTGGAGAAGGAG---GAACAACAC
FD572387       <-- GGCGGCTTTGCTTCCTCTTCTCTCGCCTGGAGAAGGAG---GAACAACAC
EX903127       <-- GGCGGCTTTGCTTCCTCTTCTCTCGCCTGGAGAAGGAG---GAACAACAC
FD940797       <-- GGCGGCTTTGCTTCCTCTTCTCTCGCCTGGAGAAGGAG---GAACAACAC
FD982012       <-- G---GCTTTGCTTCCTCTTCTCTCGCCTGGAGAAGGAGAAGGAGGAACAC
FD944804       --> ..................................................
FD977666       --> ..................................................
EX907252       --> ..................................................
EX902029       --> ..................................................
FD936594       --> ..................................................
EV532069       --> ..................................................

               1001   -   1051
UN20094        --> TTTGCTTGGTCCAGGCTCCC
                   ~~~~~~~~~~~~~~~~~~~~
FY433937       <-- ....................
EV566883       <-- TTTGCTTcc...........
EV527960       <-- ....................
EX886975       <-- TTTGCTTGGTGAAGGCTCCC
EX898468       <-- TTTGCTTGGTCC........
FD557707       <-- TTTGCTTcc...........
FD556421       <-- TTTGCTTcc...........
EV548338       <-- TTTGCTTGGTCC........
FD949117       <-- TTTGCTTGGTgaaggccc..
FD572387       <-- TTTGCTTGGTCC........
EX903127       <-- TTTGCTTGGTGAAGGCTCC.
FD940797       <-- TTTGCTTGGTgcc.......
FD982012       <-- TTTGCTTGGTCC........
FD944804       --> ....................
FD977666       --> ....................
EX907252       --> ....................
EX902029       --> ....................
FD936594       --> ....................
EV532069       --> ....................