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Alignment for radish unigene UN20110

               1      -     51
UN20110        --> CTGGTAAGCAAAACTGGACGAGCCAGCAAATTTAGAGCTCTATTTATTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- ...................GAGCCAGCAAATTTAGAGCTCTATTTATTGA
EX902110       <-- .................................AGAGCTCTATTTATTGA
EV570022       <-- ..................................................
FD965355       <-- ..................................................
FD559126       <-- ..................................................
EV536418       <-- ..................................................
FD554886       --> CTGGTAAGCAAAACTGGACGAGCCAGCAAATTTAGAGCTCTATTTATTGA
FD961120       --> .....AAGCAAAACTGGACGAGCCAGCAAATTTAGAGCTCTATTTATTGA
EV574421       --> .......GCAAAACTGGACGAGCCAGCAAATTTAGAGCTCTATTTATTGA
EV546264       --> ...................GAGCCAGCAAATTTAGAGCTCTATTTATTGA

               51     -    101
UN20110        --> AGAAAATAGAAATAAAACTTACTGTAAAGGTCTTATGGAAATACGATGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- AGAAAATAGAAATAAAACTTACTGTAAAGGTCTTATGGAAATACAATGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902110       <-- AGAAAATAGAAATAAAACTTACTGTAAAGGTCTTATGGAAATACGATGTT  Raphanus sativus cv Rat-Tail Radish #3870
EV570022       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD965355       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD559126       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV536418       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554886       --> AGAAAATAGAAATAAAACTTACTGTAAAGGTCTTATGGAGATACGATGTT  Raphanus raphanistrum subsp. landra
FD961120       --> AGAAAATAGAAATAAAACTTACTGTAAAGGTCTTATGGAAATACAATGTT  Raphanus raphanistrum subsp. maritimus
EV574421       --> AGAAAATAGAAATAAAACTTACTGTAAAGGTCTTATGGAAATACGATGTT  Raphanus raphanistrum subsp. landra
EV546264       --> AGAAAATAGAAATAAAACTTACTGTAAAGGTCTTATGGAAATACAATGTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               101    -    151
UN20110        --> TCTCAGTGTCATCTTAGGGAACAACGGTTTCAACAGCATAATAAGATTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- TCCCAGTGTCATCTTACGGAACAACGGTTTCAACAGCATAATAAGAATCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902110       <-- TCTCAGTGTCATCTTAGGGAACAACG-TTTCAACAGCATAAAAAGATTCA  Raphanus sativus cv Rat-Tail Radish #3870
EV570022       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD965355       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD559126       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV536418       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554886       --> TCTCAGTGTCATCTTAGGGAACGACG-TTTCAACAGCATAAAAAGATTCA  Raphanus raphanistrum subsp. landra
FD961120       --> TCCCAGTGTCATCTTACGGAACAACGGTTTCAACAGCATAATAAGAATCA  Raphanus raphanistrum subsp. maritimus
EV574421       --> TCTCAGTGTCATCTTAGGGAACAACG-TTTCAACAGCATAAAAAGATTCA  Raphanus raphanistrum subsp. landra
EV546264       --> TCCCAGTGTCATCTTACGGAACAACGGTTTCAACAGCATAATAAGAATCA  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN20110        --> AAGGTTACCGTCCATTGTAAGAAGCACCTTGTACAAATCTGGACGGCGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- AAGGTTACCGTCCATTGTAAGAAGCACCTTGTACAAATCCGGACGGCGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902110       <-- AAGGTTACCGTCCATCGTAAGAAGCACCTTGTACAAATCTGGACGGCGGT  Raphanus sativus cv Rat-Tail Radish #3870
EV570022       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD965355       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD559126       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV536418       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554886       --> AAGGTTACCGTCCATCGTAAGAAGCACCTTGTACAAATCTGGACGGCGGT  Raphanus raphanistrum subsp. landra
FD961120       --> AAGGTTACCGTCCATTGTAAGAAGCACCTTGTACAAATCCGGACGGCGGT  Raphanus raphanistrum subsp. maritimus
EV574421       --> AAGGTTACCGTCCATCGTAAGAAGCACCTTGTACAAATCTGGACGGCGGT  Raphanus raphanistrum subsp. landra
EV546264       --> AAGGTTACCGTCCATTGTAAGAAGCACCTTGTACAAATCCGGACGGCGGT  Raphanus raphanistrum subsp. raphanistrum (NY)

               201    -    251
UN20110        --> CACGAAACACTCCCCAGCTTTGCCTCTTCGACTTGATCTTGTCAAGATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- CACGAAACACTCCCCAGCTTTGCCTCTTCGACTTGATCTTGTCAAGATCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902110       <-- CGCGAAACACTCCCCAGCTTTGCCTCTTCAACTTGATCTTGTCAAGATCA  Raphanus sativus cv Rat-Tail Radish #3870
EV570022       <-- ...........................tcaACTTGATCT-GTCAAGATCA  Raphanus raphanistrum subsp. landra
FD965355       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD559126       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV536418       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554886       --> CACGAAACACTCCCCAGCTTTGCCTCTTCAACTTGATCTTGTCAAGATCA  Raphanus raphanistrum subsp. landra
FD961120       --> CACGAAACACTCCCCAGCTTTGCCTCTTCGACTTGATCTTGTCAAGATCA  Raphanus raphanistrum subsp. maritimus
EV574421       --> CACGAAACACTCCCCAGCTTTGCCTCTTCAACTTGATCTTGTCAAGATCA  Raphanus raphanistrum subsp. landra
EV546264       --> CACGAAACACTCCCCAGCTTTGCCTCTTCGACTTGATCTTGTCAAGATCA  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN20110        --> AACTGTGCCACGAGAACAGCTTCCGTTTTGTCATCGGCCTCGGCCACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- AACTGCGCCACGAGAACAGCTTCCGTTTTGTCATCGGCCTCGGCCACAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902110       <-- AACTGTGCCACGAGAACAGCTTCCGTTTTGTCATCGGCCTCGGCCACAAT  Raphanus sativus cv Rat-Tail Radish #3870
EV570022       <-- AACTGTGCCACGAGAACAGCTTCCGTTT-GTCATCGGCCTCGGCCACAAT  Raphanus raphanistrum subsp. landra
FD965355       <-- ..........................................GCCACAAT  Raphanus raphanistrum subsp. maritimus
FD559126       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV536418       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554886       --> AACTGTGCCACGAGAACAGCTTCCGTTTTGTCATCGGCCTCGGCCACAAT  Raphanus raphanistrum subsp. landra
FD961120       --> AACTGCGCCACGAGAACAGCTTCCGTTTTGTCATCGGCCTCGGCCACAAT  Raphanus raphanistrum subsp. maritimus
EV574421       --> AACTGTGCCACGAGAACAGCTTCCGTTTTGTCATCGGCCTCGGCCACAAT  Raphanus raphanistrum subsp. landra
EV546264       --> AACTGCGCCACGAGAACAGCTTCCGTTTTGTCATCGGCCTCGGCCACAAT  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN20110        --> TTCACCCGTCGGTCCGGTAATGAAGGAGTTTCCATAGAAAGTGATCTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- TTCACCCGTCGGTCCGGTAATGAAGGAGTTTCCATAGAAAGTGATCTGAC
EX902110       <-- TTCACCCGTCGGTCCGGTAATGAAGGAGTTTCCATAGAAAGTGATCTGAC
EV570022       <-- TTCACCCGTCGGTCCGGTAATGAAGGAGTTTCCATAGAAAGTGATCTGAC
FD965355       <-- TTCACC-GTC-GTCCGGTA-TGAAGGAGTT-CCATAGAAAGTGATCTGAC
FD559126       <-- ..................................................
EV536418       <-- ..................................................
FD554886       --> TTCACCCGTCGGTCCGGTAATGAAGGAGTTTCCATAGAAAGTGATCTGAC
FD961120       --> TTCACCCGTCGGTCCGGTAATGAAGGAGTTTCCATAGAAAGTGATCTGAC
EV574421       --> TTCACCCGTCGGTCCGGTAATGAAGGAGTTTCCATAGAAAGTGATCTGAC
EV546264       --> TTCACCCGTCGGTCCGGTAATGAAGGAGTTTCCATAGAAAGTGATCTGAC

               351    -    401
UN20110        --> TCGGTCCATGCTCGGTTTCAATTACTTCCTTCCCTATGCGGTTCGAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- TCGGTCCATGCTCGGTTTCAATTACTTCCTTCCCTATGCGGTTCGAAGCT
EX902110       <-- TCGGTCCATGCTCGGTTTCAATTACTTCCTTCCCTATGCGGTCCGAAGCT
EV570022       <-- TCGGTCCATGCTCGGTTTCAATTACTTCCTTCCCTATGCGGTTCGAAGCT
FD965355       <-- TCGGTCCATGCTCGGTTTCAATTACTTC-TTCCCTATGCGGT-CGAAGCT
FD559126       <-- .............................TTCCCTATGCGGTTCGAAGCT
EV536418       <-- ..................................................
FD554886       --> TCGGTCCATGCTCGGTTTCAATTACTTCCTTCCCTATGCGGTTCGAAGCT
FD961120       --> TCGGTCCATGCTCGGTTTCAATTACTTCCTTCCCTATGCGGTTCGAAGCT
EV574421       --> TCGGTCCATGCTCGGTTTCAATTACTTCCTTCCCTATGCGGTTCGAAGCT
EV546264       --> TCGGTCCATGCTCGGTTTCAATTACTTCCTTCCCTATGCGGTTCGAAGCT

               401    -    451
UN20110        --> ACTAGAGGCACCACATTAGCTCCAGCATGCCCTTGCATGACTCTCTTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- ACTAGAGGCACCACATTAGCTCCAGCATGCCCTTGCATGACTCTCTTCCA
EX902110       <-- ACTAGAGGCACCACATTAGCTCCAGCATGCCCTTGCATc...........
EV570022       <-- ACTAGAGGCACCACATTAGCTCCAGCATGCCCTTGCATGACTCTCTTCCA
FD965355       <-- ACTAGAGGCACCACATTAGCTCCAGCATGCCCTTGCATGACTCTCTTCCA
FD559126       <-- GCTAGAGGCACCACATTAGCTCCAGCATGCCCTTGCATGACTCTCTTCCA
EV536418       <-- ..................................................
FD554886       --> GCTAGAGGCACCACATTAGCTCCAGCATGCCCTTGCATGACTCTCTTCCA
FD961120       --> ACTAGAGGCACCACATTAGCTCCAGCATGCCCTTGCATGACTCTCTTCCA
EV574421       --> ACTAGAGGCACCACATTAGCTCCAGCATGCCCTTGCATGACTCTCTTCCA
EV546264       --> ACTAGAGGCACCACATTAGCTCCAGCATGCCCTTGCATGACTCTCTTCCA

               451    -    501
UN20110        --> ATGATCACGCGAATCC-AACCCCTGGTCTTGAGGCTCAGAGCCAATGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- ATGATCACGCGAATCC-AACCCCTGGTCTTGAGGCTCAGAGCCAATGGCA
EX902110       <-- ..................................................
EV570022       <-- ATGATCACGCGAATCC-AACCCCTGGTCTTGAGGCTCAGAGCCAATGGCA
FD965355       <-- ATGATCACGCGAATCCCAACCCCTGGTCTTGAGGCTCAGAGCCAATGGCA
FD559126       <-- ATGATCACGCGAATCC-AACCCCTGGTCTTGAGG--CAGAGCCAATGGCA
EV536418       <-- ATGATCACGCGAATCC-AACCCCTGGTCTTGAGGCTCAGATCCAATGGCA
FD554886       --> ATGATCACGCGAATCC-AACCCCTGGTCTTGAGGC--AGAGCCAATGGCA
FD961120       --> ATGATCACGCGAATCC-AACCCCTGGTCTTGAGGCTCAGAGCCAATGGCA
EV574421       --> ATGATCACGCGAATCC-AACCCCTGGTCTTGAGGCTCAGAGCCAATGGCA
EV546264       --> ATGATCACGCGAATCC-AACCCCTGGTCTTGAGGCTCAGAGCCAATGGCA

               501    -    551
UN20110        --> GTTGGATAAAAGAGTATTTCAGCACCCTGTAGAACCATAGCTCGAGCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- GTTGGATAAAAGAGTATTTCAGCACCCTGTAGAACCATAGCTCGAGCTGC
EX902110       <-- ..................................................
EV570022       <-- GTTGGATAAAAGAGTATTTCAGCACCCCGTAGAACCATAGCTCGAGCTGC
FD965355       <-- GTTGGATAAAAGAGTATTTCAGCACCCTGTAGAACCATAGCTCGAGCTGC
FD559126       <-- GTTGGATAAAAGAGTATTTCAGCACCCTGTAGAACCATAGCTCGAGCTGC
EV536418       <-- GTTGGATAAAAGAGTACTTCAGCACCCTGTAGAACCATAGCTCGAGCTGC
FD554886       --> GTTGGATAAAAGAGTATTTCAGCACCCTGTAGAACCATAGCTCGAGCTGC
FD961120       --> GTTGGATAAAAGAGTATTTCAGCACCCTGTAGAACCATAGCTCGAGCTGC
EV574421       --> GTTGGATAAAAGAGTATTTCAGCACCCCGTAGAACCATAGCTCGAGCTGC
EV546264       --> GTTGGATAAAAGAGTATTTCAGCACCCTGTAGAACCATAGCTCGAGCTGC

               551    -    601
UN20110        --> CTCAGGAAACCATTGATCCCAACATATAGCAACTCCAATTTTTGCAAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- CTCAGGAAACCATTGATCCCAACATATAGCAACTCCGATTTTTGCAAACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902110       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV570022       <-- CTCAGGAAACCATTGATCCCAACATATAGCAACTCCAATTTTTGCAAACT  Raphanus raphanistrum subsp. landra
FD965355       <-- CTCAGGAAACCATTGATCCCAACATATAGCAACTCCGATTTTTGCAAACT  Raphanus raphanistrum subsp. maritimus
FD559126       <-- CTCAGGAAACCATTGATCCCAACATATAGCAACTCCAATTTTTGCAAACT  Raphanus raphanistrum subsp. landra
EV536418       <-- CTCAGGAAACCATTGATCCCAACATATAGCAACTCCAATCTTTGCAAACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554886       --> CTCAGGAAACCATTGATCCCAACATATAGCAACTCCAATTTTTGCAAACT  Raphanus raphanistrum subsp. landra
FD961120       --> CTCAGGAAACCATTGATCCCAACATATAGCAACTCCGATTTTTGCAAACT  Raphanus raphanistrum subsp. maritimus
EV574421       --> CTCAGGAAACCATTGATCCCAACATATAGCAACTCCAATTTTTGCAAACT  Raphanus raphanistrum subsp. landra
EV546264       --> CTCAGGAAACCATTGATCCCAACATATAGCAACTCCGATTTTTGCAAACT  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN20110        --> TTGTCTGGAAAACCTTAAAGCCAGTGTCTCCAGGATTGAAATAAAATTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- TTGTCTGGAAAACCTTAAAGCCAGTGTCTCCAGGATTGAAATAAAATTTC
EX902110       <-- ..................................................
EV570022       <-- TTGTCTGGAAAACCTTAAAGCCAGTGTCTCCAGGATTGAAATAAAATTTC
FD965355       <-- TTGTCTGGAAAACCTTAAAGCCAGTGTCTCCAGGATTGAAATAAAATTTC
FD559126       <-- TTGTCTGGAAAACCTTAAAGCCAGTGTCTCCAGGATTGAAATAAAATTTC
EV536418       <-- TTGTCTGGAAAACCTTAAAGCCAGTGTCTCCAGGATTGAAATAAAATTTC
FD554886       --> TTGTCTGGAAAACCTTAAAGCCAGTGTCTCCAGGATTGAAATAAAATT..
FD961120       --> TTGTCTGGAAAACCTTAAAGCCAGTGTCTCCAGGATTGAAATAAAATTTC
EV574421       --> TTGTCTGGAAAACCTTAAAGCCAGTGTCTCCAGGATTGAAATAAAATTTC
EV546264       --> TTGTCTGGAAAACCTTAAAGCCAGTGTCTCCAGGATTGAAATAAAATTTC

               651    -    701
UN20110        --> TCTTGATACCCTGGTCCATCAGGAATATGGGACTTCCTATAAATCCCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- TCTTGATACCCTGGTCCATCAGGAATATGGGACTTCCTATAAATCCCGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902110       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV570022       <-- TCCTGATACCCTGGTCCATCAGGAATATGGGATTTCCTATAAATCCCGAG  Raphanus raphanistrum subsp. landra
FD965355       <-- TCTTGATACCCTGGTCCATCAGGAATATGGGACTTCCTATAAATCCCGAG  Raphanus raphanistrum subsp. maritimus
FD559126       <-- TCCTGATACCCTGGTCCATCAGGAATATGGGATTTCCTATAAATCCCGAG  Raphanus raphanistrum subsp. landra
EV536418       <-- TCTTGATATCCTGGTCCATCAGGAATATGGGACTTCCTATAAATCCCGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554886       --> ..................................................  Raphanus raphanistrum subsp. landra
FD961120       --> TCTTGATACCCTGGTCCATCAGGAATATGGGACTTCCTATAAATCCCGAG  Raphanus raphanistrum subsp. maritimus
EV574421       --> TCCTGATACCCTGGTCCATCAGGAATATGGGATTTCCTATAAATCCCGAG  Raphanus raphanistrum subsp. landra
EV546264       --> TCTTGATACCCTGGTCCATCAGGAATATGGGACTTCCTATAAATCCCGAG  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN20110        --> ATCAGTTCCATCAGCGTCAATAATGGCAATAGAGTTGTAATGCGCATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- ATCAGTTCCc........................................
EX902110       <-- ..................................................
EV570022       <-- ATCAGTTCCATCAGCGTCAATAATGGCAATAGAGTTGTAATGCGCATTGT
FD965355       <-- ATCAGTTCCATCAGCGTCAATAATGGCAATAGAGTTGTAATGCGCATTGT
FD559126       <-- ATCAGTTCCATCAGCGTCAATAATGGCAATAGAGTTGTAATGCGCATTGT
EV536418       <-- ATCAGTTCCATCAGCGTCAATAATAGCAATAGAGTTGTAATGCGCATTGT
FD554886       --> ..................................................
FD961120       --> ATCAGTTC..........................................
EV574421       --> ATCAGTTCCATCAGCGTCAATAATGGCAATAGAGTTGTAATGCGCATTGT
EV546264       --> ATCAGTTCCc........................................

               751    -    801
UN20110        --> TTGCCTCCTCGAAGAAGCTAACGGGTATCACAACACCCAGCTCCTTTGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- ..................................................
EX902110       <-- ..................................................
EV570022       <-- TTGCCTCCTCGAAGAAGCTAACGGGTATCACAACACCCAGCTCCTTTGCC
FD965355       <-- TTGCCTCCTCAAAGAAGCTAACGGGTATCACAACACCCAGCTCCTTTGCC
FD559126       <-- TTGCCTCCTCGAAGAAGCTAACGGGTATC-CAACCCCCAGCTCCTTTGCC
EV536418       <-- TTGCCTCCTCAAAGAAGCTAACGGGTATCACAACACCCAGCTCCTTTGCC
FD554886       --> ..................................................
FD961120       --> ..................................................
EV574421       --> TTGCCTCCTCGAAGAAGCTAACGGGTATCACAACACCCAGCTCCTTTGCC
EV546264       --> ..................................................

               801    -    851
UN20110        --> AGCTTCTGCATCCTTGCAATGGTAGGATGGTCCTTGTAAGGCTTGGCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- ..................................................
EX902110       <-- ..................................................
EV570022       <-- AGCTTCTGCATCCTTGCAATGGTAGGATGGTCCTTGTAAGGCTTGGCTCT
FD965355       <-- AGCTTCTGCATCCTTGCAATGGTAGGATGGTCCTTGTAAGGCTTGGCTCT
FD559126       <-- AGCTTCTGCATCCTTGCAATGGTAGGATGGTCCTTGTAAGGCTTGGCTCT
EV536418       <-- AGCTTCTGCATCCTTGCAATGGTAGGATGGTCCTTGTAAGGCTTGGCTCT
FD554886       --> ..................................................
FD961120       --> ..................................................
EV574421       --> AGCTTCTGCATCCTTGCAAT..............................
EV546264       --> ..................................................

               851    -    901
UN20110        --> CTGAAAGAAGTCTTCTCTTTGTGCTTGACAGAAGTAATATCCCTCAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- ..................................................
EX902110       <-- ..................................................
EV570022       <-- CTGAAAGAAGTCTTCTCTTTGTGCTTGACAGAAGTAATATCCCTCAAAAA
FD965355       <-- CTGAAAGAAGTCTTCTCTTTGTGCTTGACAGAAGTAATACCCCTCAAAAA
FD559126       <-- CTGAAAGAAGTCTTCTCTTTGTGCTTGACAGAAGTAATATCCCTCAAAAA
EV536418       <-- CTGAAAGTAGTCTTCTCTTTGTGCTTGACAGAAGTAATATCCCTCAAAAA
FD554886       --> ..................................................
FD961120       --> ..................................................
EV574421       --> ..................................................
EV546264       --> ..................................................

               901    -    951
UN20110        --> GTTCCTGAATAAGAACGATGTTTGCTCCTTTTGAGTGTGCTTCTCTGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- ..................................................
EX902110       <-- ..................................................
EV570022       <-- GTTCCTGAATAAGAACGATGTTTGCTCCTTTTGAGTGTGCTTCTCTGACC
FD965355       <-- GCTCCTGAATAAGAACGATGTTTGCTCCTTTTGAGTGTGCTTCTCTGACC
FD559126       <-- GTTCCTGAATAAGAACGATGTTTGCTCCTTTTGAGTGTGCTTCTCTGACC
EV536418       <-- GTTCCTGAATAAGAACGATGTTTGCTCCTTTTGAGTGTGCTTCTCTGACC
FD554886       --> ..................................................
FD961120       --> ..................................................
EV574421       --> ..................................................
EV546264       --> ..................................................

               951    -   1001
UN20110        --> AGCCTTTCGGCGGCGGCGACGTTGGAGGAGATATCGTCGGAGCAGGCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- ..................................................
EX902110       <-- ..................................................
EV570022       <-- AGCCTTTCGGCGGCGGCGACGTTGGAGGAGATATCGTCGGAGCAGGTGAA
FD965355       <-- AGCCTTTCGGCGGCGGCGACGTTGGAGGAGATATCGTCCGAGCAGGCGAA
FD559126       <-- AGCCTTTCGGCGGCGGCGACGTTGGAGGAGATATCGTCGGAGCAGGCGAA
EV536418       <-- AGCCTTTCGGCGGCGGCGACGTTGGAGGAGATATCGTCGGAGCAGGCGAA
FD554886       --> ..................................................
FD961120       --> ..................................................
EV574421       --> ..................................................
EV546264       --> ..................................................

               1001   -   1051
UN20110        --> TTGAAGAGACGAAACAACCACTTCACCCCTTCTTCCTTCCATTTTCCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- ..................................................
EX902110       <-- ..................................................
EV570022       <-- TTGAAGAGACGAAACAACCACTTCACCCCTTCTTCCTTCCATTTTCCGTT
FD965355       <-- TTGAAGAGACGAAACAACCACTTCTCTCCTTCTTCCTTCCATTT-CTGTT
FD559126       <-- TTGAAGAGACGAAACAACCACTTCACCCCTTCTTCCTTCCATTTTCCGTT
EV536418       <-- TTGAAGAGACGAAACAACCACTTCACCCCTTCTTCCTTCCATTTTCCGTT
FD554886       --> ..................................................
FD961120       --> ..................................................
EV574421       --> ..................................................
EV546264       --> ..................................................

               1051   -   1101
UN20110        --> CCTCTCTGTGT-TTTCTCTCGGGTGGGTGAAAGAGATATGACTGTCACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- ..................................................
EX902110       <-- ..................................................
EV570022       <-- CCTATCTGTGT-TTTCTCTCGGGTcc........................
FD965355       <-- CCTCTCTGTGTGTTTCTCTCGGGTGGGTGAAA-AGATATGACTGTCc...
FD559126       <-- CCTATCTGTGT-TTTCTCTCGGGTGGGTGAAATTGATATcc.........
EV536418       <-- CCTCTCTCTGT-TTTCTCTCGGGTGGGTGAAAGAGATATGACTGTCACTT
FD554886       --> ..................................................
FD961120       --> ..................................................
EV574421       --> ..................................................
EV546264       --> ..................................................

               1101   -   1151
UN20110        --> GGAGGAAAAGGAGAGAGAGAATATATCCGCTTACCTTTTTCCGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551101       <-- ..............................................
EX902110       <-- ..............................................
EV570022       <-- ..............................................
FD965355       <-- ..............................................
FD559126       <-- ..............................................
EV536418       <-- GGAGGAAAAGGAGAGAGAGAATATATCCGCTTACCTTTTTCCGTCC
FD554886       --> ..............................................
FD961120       --> ..............................................
EV574421       --> ..............................................
EV546264       --> ..............................................