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Alignment for radish unigene UN20149

               1      -     51
UN20149        --> GGGAAAAGCAAAAAAAAAGGAGTAGAGTTAACCAATATAATAACTAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- ..................................................
EW720824       <-- ..................................................
EY918669       <-- ..................................................
FY428327       <-- ..................................................
EW717201       --> GGGAAAAGCAAAAAAAAAGGAGTAGAGTTAACCAATATAATAACTAAAAA
EY922763       --> ....................ggggGAGTTAACCAATATAATAACTAAAAA
EY921626       --> ..................................................
EV551738       --> ..................................................
FD940279       --> ..................................................

               51     -    101
UN20149        --> AACAAAGAAGATTGTAAGATAAAGCTGATTTGAAGTTCACATTGCAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- ..................................................
EW720824       <-- ..................................................
EY918669       <-- ..................................................
FY428327       <-- ..................................................
EW717201       --> AACAAAGAAGATTGTAAGATAAAGCTGATTTGAAGTTCACATTGCAAGAA
EY922763       --> AACAAAGAAGATTGTAAGATAAAGCTGAT--GAAGTTCACATTGCAAGAA
EY921626       --> ...............................................ggA
EV551738       --> ..................................................
FD940279       --> ..................................................

               101    -    151
UN20149        --> GAGAATCTGCTTATAACAAAAGAAA---GAGAGATATAAGAGAAGACCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- ..................................................
EW720824       <-- ..................................................
EY918669       <-- ..................................................
FY428327       <-- ..................................................
EW717201       --> GAGAATCTGCTTATAACAAAAAAAAAAAGAGAGATATAAGAGACGACCTT
EY922763       --> GAGAATCTGCTTATAACAAAAGAAA---GAGAGATATAAGAGAAGACCTT
EY921626       --> GAGAATCTGCTTATAACAAAAGAAA---GAGAGATATAAGAGAAGACCTT
EV551738       --> ..................................................
FD940279       --> ..................................................

               151    -    201
UN20149        --> GCTAAGTCTTTGGTTTCTTCTTGATAACACAACTACTACTATGTACAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- ..................................................
EW720824       <-- ..................................................
EY918669       <-- ..................................................
FY428327       <-- ..................................................
EW717201       --> GCTAAGTCTTTGGTTTCTTCTTGATAACACAACTACTACTATGTACAGAT
EY922763       --> GCTAAGTCTTTGGTTTCTTCTTGATAACACAACTACTACTATGTACAGAT
EY921626       --> GCTAAGTCTTTGGTTTCTTCTTGATAACACAACTACTACTATGTACAGAT
EV551738       --> ....................ggGATAACACAACTACTACTATGTACAGAT
FD940279       --> .......................ggAACACAACTACTACTATGTACAGAT

               201    -    251
UN20149        --> TCAGCAACACAGTGATAGGAGTCTTAAACCTCCTCAGCTTACTAGCTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- ..................................................
EW720824       <-- ..................................................
EY918669       <-- ..................................................
FY428327       <-- ..................................................
EW717201       --> TCAGCAACACAGTGATAGGAGTCTTAAACCTCCTCAGCTTACTAGCTTCA
EY922763       --> TCAGCAACACAGTGATTGGGGTCTTAAACCTCCTCAGCTTACTAGCTTCG
EY921626       --> TCAGCAACACAGTGATTGGAGTCTTAAACCTCCTCAGCTTACTAGCTTCG
EV551738       --> TCAGCAACACAGTGATAGGAGTCTTAAACCTCCTCAGCTTACTAGCTTCA
FD940279       --> TCAGCAACACAGTGATAGGAGTCTTAAACCTCCTCAGCTTACTAGCTTCA

               251    -    301
UN20149        --> ATACCAATCATAGGAGCCGCTCTATGGAAGGCAAGAAGCAGCACAACTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- ..................................................
EW720824       <-- ..................................................
EY918669       <-- ..................................................
FY428327       <-- ..................................................
EW717201       --> ATACCAATCATAGGAGCCGCTCTATGGAAGGCAAGAAGCAGCACAACTTG
EY922763       --> ATACCAATCATAGGAGCCGCTCTATGGAAGGCAAGAAGCAGCACGACTTG
EY921626       --> ATACCAATCATAGGAGCCACTCTATGGAAGGCAAGAAGCAGCACGACTTG
EV551738       --> ATACCAATCATAGGAGCCGCTCTATGGAAGGCAAGAAGCAGCACAACTTG
FD940279       --> ATACCAATCATAGGAGCCGCTCTATGGAAGGCAAGAAGCAGCACAACTTG

               301    -    351
UN20149        --> CGAGAACTTCCTCCAAACTCCTCTACTCGTTATAGGTTTCATCATACTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- ..................................................
EW720824       <-- ..................................................
EY918669       <-- ..................................................
FY428327       <-- ..................................................
EW717201       --> CGAGAACTTCCTCCAAACTCCTCTACTCGTTATAGGTTTCATCATACTCT
EY922763       --> CGAGAACTTCCTCCAAACTCCTCTACTCGTTATAGGTTTCATCATACTCT
EY921626       --> CGAGAACTTCCTCCAAACTCCTCTACTCGTTATAGGTTTCATCATACTCT
EV551738       --> CGAGAACTTCCTCCAAACTCCTCTACTCGTTATAGGTTTCATCATATTCT
FD940279       --> CGAGAACTTCCTCCAAACTCCTCTACTCGTTATAGGTTTCATCATACTCT

               351    -    401
UN20149        --> TAGTATCCCTCGCCGGGTTCATAGGAGCATGTTTCAACGTGGCATGGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- ..................TCATAGGAGCATGTTTCAACGTGGCGTGGGCT
EW720824       <-- ....................ATAGGAGCATGTTTCAACGTGGCATGGGCT
EY918669       <-- .....................TAGGAGCATGTTTCAACGTGGCATGGGCT
FY428327       <-- ..................................................
EW717201       --> TAGTATCCCTCGCCGGGTTCATAGGAGCATGTTTCAACGTGGCATGGGCT
EY922763       --> TAGTATCCCTCGCCGGGTTCATAGGAGCATGTTTCAACGTGGCATGGGCT
EY921626       --> TAGTATCCCTCGCCGGGTTCATAGGAGCATGTTTCAACGTGGCATGGGCT
EV551738       --> TAGTATCCCTCGCCGGGTTCATAGGAGCATGTTTCAACGTGGCGTGGGCT
FD940279       --> TAGTGTCCCTCGCCGGGTTCATAGGAGCATGTTTCAACGTGGCATGGGCT

               401    -    451
UN20149        --> CTTTGGGTTTACTTAGTGGTCATGATTTTCCTCATCGCGACTCTTATGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- CTTTGGGTTTACTTAGTGGTCATGATTTTCCTCATCGCGACTCTTATGGG
EW720824       <-- CTTTGGGTTTACTTAGTGGTCATGATTTTCCTCATCGCGACTCTTATGGG
EY918669       <-- CTTTGGGTTTACTTAGTGGTCATGATTTTCCTCATCGCGACTCTTATGGG
FY428327       <-- ..................................................
EW717201       --> CTTTGGGTTTACTTAGTGGTCATGATTTTCCTCATCGCGACTCTTATGGG
EY922763       --> CTTTGGGTTTACTTAGTGGTCATGATTTTCCTCATCGCGACTCTTATGGG
EY921626       --> CTTTGGGTTTACTTAGTGGTCATGATTTTCCTCATCGCTACTCTTATGGG
EV551738       --> CTTTGGGTTTACTTAGTGGTCATGATTTTCCTCATCGCGACTCTTATGGG
FD940279       --> CTTTGGGTTTACTTAGTGGTCATGATTTTCCTCATCGCGACTCTTATGGG

               451    -    501
UN20149        --> TCTAACTCTGTTTGGTCTGGTGGTGACGAGCCAAGGAGGTGGTGTGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- TCTAACTCTGTTTGGTCTGGTGGTGACGAGCCAAGGAGGTGGTGTGGAAG
EW720824       <-- TCTAACTCTGTTTGGTCTGGTGGTGACGAGCCAAGGAGGTGGTGTGGAAG
EY918669       <-- TCTAACTCTGTTTGGTCTGGTGGTGACGAGCCAAGGAGGTGGTGTGGAAG
FY428327       <-- ..................................................
EW717201       --> TCTAACTCTGTTTGGTCTGGTGGTGACGAGCCAAGGAGGTGGTGTGGAAG
EY922763       --> TCTAACTCTGTTTGGTCTGGTGGTGACGAGCCAAGGAGGTGGTGTGGAAG
EY921626       --> TCTAACTCTGTTTGGTCTGGTGGTGACGAGCCAAGGAGGTGGTGTGGAAG
EV551738       --> TCTAACTCTGTTTGGTCTGGTGGTGACGAGCCAAGGAGGTGGTGTGGAAG
FD940279       --> TCTAACTCTGTTTGGTCTGGTGGTGACGAGCCAAGGAGGTGGTGTGGAA-

               501    -    551
UN20149        --> TACCAGGGAGGGTTTATAAAGAGTACAGGCTTGGAGATTATCATCCATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- TACCAGGGAGGGTTTATAAAGAGTACAGGCTTGGAGATTATCATCCATGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW720824       <-- TACCAGGGAGGTTTTATAAAGAGTACAGGCTTGGAGATTATCATCCATGG  Raphanus sativus var. oleiformis
EY918669       <-- TACCAGGGAGGGTTTACAAAGAGTATAGGCTTGGAGATTATCATCCATGG  Raphanus raphanistrum subsp. landra
FY428327       <-- ..................................................  Raphanus sativus cv GSK3-1
EW717201       --> TACCAGGGAGGTTTTATAAAGAGTACAGGCTTGGAGATTATCATCCATGG  Raphanus sativus var. oleiformis
EY922763       --> TACCAGGGAGGGTTTACAAAGAGTATAGGCTTGGAGATTATCATCCATGG  Raphanus raphanistrum subsp. landra
EY921626       --> TACCAGGGAGGGTTTACAAAGAGTATAGGCTTGGAGATTATCATCCATGG  Raphanus raphanistrum subsp. landra
EV551738       --> TACCAGGGAGGGTTTATAAAGAGTACAGGCTTGGAGATTATCATCCATGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940279       --> TACCAGGGAGGGTT-ATAAAGAG-ACAGGCTTGGAGATTATCATCCATGG  Raphanus sativus var. oleiformis

               551    -    601
UN20149        --> CTGAGAGAAAGAGTTAGAGATCCTCAGTATTGGATCTCTATAAGAAGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- CTGAGAGAAAGAGTTAGAGATCCTCAGTATTGGATCTCTATAAGAAGCTG
EW720824       <-- CTGAGAGAAAGAGTTAGAGATCCTCAGTATTGGATCTCTATAAGAAGCTG
EY918669       <-- CTGAGAGAAAGAGTTAGAGATCCTCAGTATTGGATCTCTATAAGAAGCTG
FY428327       <-- ............GTTAGAGATCCTCAGTATTGGATCTCTATAAGAAGCTG
EW717201       --> CTGAGAGAAAGAGTTAGAGATCCTCAGTATTGGATCTCTATAAGAAGCTG
EY922763       --> CTGAGAGAAAGAGTTAGAGATCCTCAGTATTGGATCTCTATAAGAAGCTG
EY921626       --> CTGAGAGAAAGAGTTAGAGATCCTCAGTATTGGATCTCTATAAGAAGCTG
EV551738       --> CTGAGAGAAAGAGTTAGAGATCCTCAGTATTGGATCTCTATAAGAAGCTG
FD940279       --> CTGAGAGAAA........................................

               601    -    651
UN20149        --> TATCTTGAGTTCCAAGACTTGTGCTAAGATTGAATCTTGGACTACACTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- TATCTTGAGTTCCAAGACTTGTGCTAAGATTGAATCTTGGACTACACTTG
EW720824       <-- TATCTTGAGTTCCAAGACTTGTGCTAAGATTGAATCTTGGACTACACTTG
EY918669       <-- TATCTTGAGTTCCAAGACTTGTGCTAAGATTGAATCTTGGACTACACTTG
FY428327       <-- TATCTTGAGTTCCAAGACTTGTGCTAAGATTGAATCTTGGACTACACTTG
EW717201       --> TATCTTGAGTTCCAAGACTTGTGCTAAGATTGAATCTTGGACTACACTTG
EY922763       --> TATCTTGAGTTCCAAGACTTGTGCTAAGATTGAATCTTGGACTACACTTG
EY921626       --> TATCTTGAGTTCCAAGACTTGTGCTAAGATTGAATCCTGGACTACACTTG
EV551738       --> TATCTTGAGTTCCAAGACTTGTGCTAAGATTGAATCTTGGACTACACTTG
FD940279       --> ..................................................

               651    -    701
UN20149        --> ATTACTTCCAAAGAGACATGACTTCTGTTCAGTCGGGATGTTGTAAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- ATTACTTCCAAAGAGACATGACTTCTGTTCAGTCGGGATGTTGTAAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW720824       <-- ATTACTTCCAAAGAGACATGACTTCTGTTCAGTCGGGATGTTGTAAGCCA  Raphanus sativus var. oleiformis
EY918669       <-- ATTACTTCCAAAGAGACATGACCTCTGTTCAGTCGGGATGTTGTAAGCCA  Raphanus raphanistrum subsp. landra
FY428327       <-- ATTACTTCCAAAGAGACATGACTTCTGTTCAGTCGGGATGTTGTAAGCCA  Raphanus sativus cv GSK3-1
EW717201       --> ATTACTTCCAAAGAGACATGACTTCTGT-CAGTCGGGATGTTGTA-GCCA  Raphanus sativus var. oleiformis
EY922763       --> ATTACTTCCAAAGAGACATGACCTCTGTTCAGTCGGGATGTTGTAAGCCA  Raphanus raphanistrum subsp. landra
EY921626       --> ATTACTTCCAAAGAGACATGACCTCTGTTCAGTCGGGATGTTGTAAGCCA  Raphanus raphanistrum subsp. landra
EV551738       --> ATTACTTCCAAAGAGACATGACTTCTGTTCAGTCGGGATGTTGTAAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940279       --> ..................................................  Raphanus sativus var. oleiformis

               701    -    751
UN20149        --> CCGACGGCGTGCACGTACGAGACCGGAGTAATAGTAGGAGGAGATGATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- CCGACGGCGTGCACGTACGAGACCGGAGTAATAGTAGGAGGAGATGATTG
EW720824       <-- CCGACGGCGTGCACGTACGAGACCGGAGTAATAGTAGGAGGAGATGATTG
EY918669       <-- CCGACGGCGTGCACGTACGAGACCGGAGTAATAGTAGGAGGAGATGATTG
FY428327       <-- CCGACGGCGTGCACGTACGAGACCGGAGTAATAGTAGGAGGAGATGATTG
EW717201       --> CCGACG-CGTGCACGTACGAGACCGGAGTA-TAGTAG-AGGAGATGATTG
EY922763       --> CCGACGGCGTGCACGTACGAGACCGGAGTAATAGTAG-AGGAGATGATTG
EY921626       --> CCGACGGCGTGCACGTACGAGACCGGAG......................
EV551738       --> CCGACGGCGTGCACGTACGAGACCGGAGTAATAGTAGGAGGAGATGATTG
FD940279       --> ..................................................

               751    -    801
UN20149        --> CTATAGATGGAACAATGGTATTGAAACGTTATGCTACGAGTGTGATGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- CTATAGATGGAACAATGGTATTGAAACGTTATGCTACGAGTGTGATGCTT
EW720824       <-- CTATAGATGGAACAATGGTATTGAAACGTTATGCTACGAGTGTGATGCTT
EY918669       <-- CTATAGATGGAATAATGGTATTGAAACGTTATGCTACGAGTGTGATGCTT
FY428327       <-- CTATAGATGGAATAATGGTATTGAAACGTTATGCTACGAGTGTGATGCTT
EW717201       --> CTATAGATGGA-C-ATGGTATTGA..........................
EY922763       --> CTATAGA...........................................
EY921626       --> ..................................................
EV551738       --> CTATAGATGGAACAATGGTATTGAAACGTTATGCTACGAGTGTGATGCTT
FD940279       --> ..................................................

               801    -    851
UN20149        --> GTAAAGCTGGTGTTCTTGAGGAGATCCGTCTTGACTGGAGAAAGTTGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- GTAAAGCTGGTGTTCTTGAGGAGATCCGTCTTGACTGGAGAAAGTTGTCG
EW720824       <-- GTAAAGCTGGTGTTCTTGAGGAGATCCGTCTTGACTGGAGAAAGTTGTCG
EY918669       <-- GTAAAGCTGGTGTTCTTGAGGAGATCCGTCTTGACTGGAGAAAGTTGTCG
FY428327       <-- GTAAAGCTGGTGTTCTTGAGGAGATCCGTCTTGACTGGAGAAAGTTGTCG
EW717201       --> ..................................................
EY922763       --> ..................................................
EY921626       --> ..................................................
EV551738       --> GTAAAGCTGGTGTTCTTGAGGAGATCCGTCTTGACTGGAGAAAGTTGTCG
FD940279       --> ..................................................

               851    -    901
UN20149        --> GTGGTTAACATTTTGGTCCTTGTCCTCCTCATCGCTGTCTATGCTGCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- GTGGTTAACATTTTGGTCCTTGTCCTCCTCATCGCTGTCTATGCTGCAGG
EW720824       <-- GTGGTTAACATTTTGTTCCTTGTCCTCCTCATCTCTGTCTATGCTGCAGG
EY918669       <-- GTGGTTAACATTTTGGTCCTTGTCCTCCTCATCGCTGTCTATGCTGCGGG
FY428327       <-- GTGGTTAACATTTTGGTCCTTGTCCTCCTCATCGCTGTCTATGCTGCAGG
EW717201       --> ..................................................
EY922763       --> ..................................................
EY921626       --> ..................................................
EV551738       --> GTGGTTAACATTTTGGTCCTTGTCCTCCTCATCGCTGTCTATGCTGCAG-
FD940279       --> ..................................................

               901    -    951
UN20149        --> TTGCTGCGCCTTCCACAACACTCGCCACGCAGCACATCCTTATCATCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- TTGCTGCGCCTTCCACAACACTCGCCACGCAGCACATCCTTATCATCCTT
EW720824       <-- TTGCTGCGCCTTCCACAACACTCGCCACGCAGCACATCCTTATCATCCTT
EY918669       <-- TTGCTGCGCCTTCCACAACACTCGCCACGCAGTACATCCTTATCATCCTT
FY428327       <-- TTGCTGCGCCTTCCACAACACTCGCCACGCAGCACATCCTTATCATCCTT
EW717201       --> ..................................................
EY922763       --> ..................................................
EY921626       --> ..................................................
EV551738       --> TTGCTGCGCCTTCCACAACACTCGCCACGCAGCACATCCTTATCATCCTT
FD940279       --> ..................................................

               951    -   1001
UN20149        --> CTGATGATAATCGCATGACTAAAGTCCGTCCTCGTTGGGACTACTACTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- CTGATGATAATCGCATGACTAAAGTCCGTCCTCGTTGGGACTACTACTGG
EW720824       <-- CTGATGATAATCGCATGACTAAAGTCCGTCCTCGTTGGGACTACTACTGG
EY918669       <-- CTGATGATAATCGCATGACTAAAGTCCGTCCTCGTTGGGACTACTACTGG
FY428327       <-- CTGATGATAATCGCATGACTAAAGTCCGTCCTCGTTGGGACTACTACTGG
EW717201       --> ..................................................
EY922763       --> ..................................................
EY921626       --> ..................................................
EV551738       --> CTGATGATAATCGCATGACTAAAGTCCGTCCTCGTTGGGACTACTACTGG
FD940279       --> ..................................................

               1001   -   1051
UN20149        --> TGGAGATGGTGGCATGAGAAGAAAGAGCAGCTTTACTGAGAGAGCAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- TGGAGATGGTGGCATGAGAAGAAAGAGCAGCTTTACTGAGAGAGCAGCCA
EW720824       <-- TGGAGATGGTGGCATGAGAAGAAAGAGCAGCTTTACTGAGAGAGCAGCCA
EY918669       <-- TGGAGATGGTGGCATGAGAAGAAAGAGCAGCTTTACTGAGAGAGCAGCCA
FY428327       <-- TGGAGATGGTGGCATGAGAAGAAAGAGCAGCTTTACTGAGAGAGCAGCCA
EW717201       --> ..................................................
EY922763       --> ..................................................
EY921626       --> ..................................................
EV551738       --> TGGAGATGGTGGCATGAGA-GAAAGAGCAG....................
FD940279       --> ..................................................

               1051   -   1101
UN20149        --> CATCGCTTGTGTTTTCATATTTTCATCATTATCTGTTTACCAAACCAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- CATCGCTTGTGTTTTCATATTTTCATCATTATCTGTTTACCAAACCAGCT
EW720824       <-- CATCGCTTGTGTTTTCATATTTTCATCATTATCTGTTTACCAAACCAGCT
EY918669       <-- CATCGCTTGTGTTTTCATATTTTCATCATTATCTGTTTACCAAACCAGCT
FY428327       <-- CATCGCTTGTGTTTTCATATTTTCATCATTATCTGTTTACCAAACCAGCT
EW717201       --> ..................................................
EY922763       --> ..................................................
EY921626       --> ..................................................
EV551738       --> ..................................................
FD940279       --> ..................................................

               1101   -   1151
UN20149        --> TGAGATTAAGAAAACACAAATCTAAGAAATGTTGATGTACTTCTGTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- TGAGATTAAGAAAACACAAATCTAAGAAATGTTGATGTACTTCTGTTTTC
EW720824       <-- TGAGATTAAGAAAACACAAATCTAAGAAATGTTGATGTACTTCTGTTTTC
EY918669       <-- TGAGATTAAGAAAACACAAATCTAAGAAACGTTGATGTACTTCTGTTTTC
FY428327       <-- TGAGATTAAGAAAACACAAATCTAAGAAATGTTGATGTACTTCTGTTTTC
EW717201       --> ..................................................
EY922763       --> ..................................................
EY921626       --> ..................................................
EV551738       --> ..................................................
FD940279       --> ..................................................

               1151   -   1201
UN20149        --> TATAGTTCATCAAGAGATGTAGTAAAAGTTGTTCTGATCTCAGAAGAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- TATAGTTCATCAAGAGATGTAGTAAAAGTTGTTCTGATCTC.........
EW720824       <-- TATAGTTCATCAAGAGATGTAGc...........................
EY918669       <-- TATAGTTCATCAAGAGATGTAGTAAAAGTTGTT.................
FY428327       <-- TATAGTTCATCAAGAGATGTAGTAAAAGTTGTTCTGATCTCAGAAGAAAC
EW717201       --> ..................................................
EY922763       --> ..................................................
EY921626       --> ..................................................
EV551738       --> ..................................................
FD940279       --> ..................................................

               1201   -   1251
UN20149        --> AAAAGGAAACATACATGGAAGATCGATCAATAGAGAGTCAGAGACTATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- ..................................................
EW720824       <-- ..................................................
EY918669       <-- ..................................................
FY428327       <-- AAAAGGAAACATACATGGAAGATCGATCAATAGAGAGTCAGAGACTATGA
EW717201       --> ..................................................
EY922763       --> ..................................................
EY921626       --> ..................................................
EV551738       --> ..................................................
FD940279       --> ..................................................

               1251   -   1301
UN20149        --> ACAAGTTGAATATATATATATTGAATTTCAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546783       <-- .................................
EW720824       <-- .................................
EY918669       <-- .................................
FY428327       <-- ACAAGTTGAATATATATATATTGAATTTCAATT
EW717201       --> .................................
EY922763       --> .................................
EY921626       --> .................................
EV551738       --> .................................
FD940279       --> .................................