1      -     51
UN20184        --> TTTAATGAAACAAATTCTGATAAAAGTTAAAAAGAGAGTAGAAAGACATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921670       <-- TTTAATGAAACAAAT-CTGATAAAAGTTAAAA-GAGAGTAGAA-GACATG
EX749542       <-- .....gaAAACAAATTCTGATAAAAGTTAAAAAGAGAGTAGAAAGACATG
EY913632       <-- ..................................gGAGTAGAAAGACATG
FD962135       <-- ....................................AGTAGAAAGACATG
EV528781       <-- ............................................ggCATG
EY914354       <-- ..................................................
FD980745       <-- ..................................................
EX753207       --> .....gaAAACAAATTCTGATAAAAGTTAAAAAGAGAGTAGAAAGACATG
EY917778       --> .aattgaAAACAAATTCTGATAAAAGTTAAAAAGAGAGTAGAAAGACATG
FD976590       --> .................................GAGAGTAGAAAGACATG
EY909836       --> ..................................gGAGTAGAAAGACATG
EY910417       --> ..................................cGAGTAGAAAGACATG
EV532677       --> ............................................ggCATG
FD958743       --> ..................................................

               51     -    101
UN20184        --> GGATATAAATAAATTGT----CGAGAAAGAAAACATTAGGGCAAAATCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921670       <-- GGATATAA-TAAAT-GT----CGAGAAAGAAA-CATTAGGACAAA-TCCG  Raphanus raphanistrum subsp. landra
EX749542       <-- GGATATAAATAAATTGT----CGAGAAAGAAAACATTAGGGCAAAATCCG  Raphanus raphanistrum subsp. maritimus
EY913632       <-- GGATATAAATAAATTGTAACTCAAGAAAGAAAACATTACGGCAAAATCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962135       <-- GGATATAAATAAATTGT----CGAGAAAGAAAACATTAGGGCAAAATCCG  Raphanus raphanistrum subsp. maritimus
EV528781       <-- GGATATAAATAAATTGT----CGAGAAAGAAAACATTAGGGCAAAATCCG  Raphanus raphanistrum subsp. maritimus
EY914354       <-- ...................actcAGAAAGAAA-CATTACGGCAAA-TCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980745       <-- .............................................ATCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753207       --> GGATATAAATAAATTGT----CGAGAAAGAAAACATTAGGGCAAAATCCG  Raphanus raphanistrum subsp. maritimus
EY917778       --> GGATATAAATAAATTGT----CGAGAAAGAAAACATTAGGACAAAATCCG  Raphanus raphanistrum subsp. landra
FD976590       --> GGATATAAATAAATTGTAACTCAAGAAAGAAAACATTACGGCAAAATCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909836       --> GGATATAAATAAATTGTAACTCAAGAAAGAAAACATTACGGCAAAATCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910417       --> GGATATAAATAAATTGTAACTCAAGAAAGAAAACATTACGGCAAAATCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532677       --> GGATATAAATAAATTGT----CGAGAAAGAAAACATTAGGGCAAAATCCG  Raphanus raphanistrum subsp. maritimus
FD958743       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               101    -    151
UN20184        --> ATACAACACCTAAGTGAAAGTGAAAAAAGTATTATAGGTTGGCTCAAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921670       <-- ATACAACAC-TAAGTGAAAGTGAAAAAAGTATTATAGGTTGGCTCAAAAC  Raphanus raphanistrum subsp. landra
EX749542       <-- ATACAACACCTAAGTGAAAGTGAAAAAAGTATTATAGGTTGGCTCAAAAC  Raphanus raphanistrum subsp. maritimus
EY913632       <-- ATACAACACCTAAGTGAAAGTGAAAAAAGTATTATAGGTAGGCTCAAAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962135       <-- ATACAACACCTAAGTGAAAGTGAAAAAAGTATTATAGGTTGGCTCAAAAC  Raphanus raphanistrum subsp. maritimus
EV528781       <-- ATACAACAC-TAAGTGAAAGTGAAAAAAGTATTATAGGTTGGCTCAAAAC  Raphanus raphanistrum subsp. maritimus
EY914354       <-- ATACAACAC-TAAGTGAAAGTGAAAAAAGTATTATAGGTAGGCTCAAAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980745       <-- ATACAACAC-TAAGTGAAAGTGAAAAAAGTATTATAGGTAGGCTCAAAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753207       --> ATACAACACCTAAGTGAAAGTGAAAAAAGTATTATAGGTTGGCTCAAAAC  Raphanus raphanistrum subsp. maritimus
EY917778       --> ATACAACACCTAAGTGAAAGTGAAAAAAGTATTATAGGTTGGCTCAAAAC  Raphanus raphanistrum subsp. landra
FD976590       --> ATACAACACCTAAGTGAAAGTGAAAAAAGTATTATAGGTAGGCTCAAAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909836       --> ATACAACACCTAAGTGAAAGTGAAAAAAGTATTATAGGTAGGCTCAAAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910417       --> ATACAACACCTAAGTGAAAGTGAAAAAAGTATTATAGGTAGGCTCAAAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532677       --> ATACAACACCTAAGTGAAAGTGAAAAAAGTATTATAGGTTGGCTCAAAAC  Raphanus raphanistrum subsp. maritimus
FD958743       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               151    -    201
UN20184        --> ATGCAAAGACGACAAACTACTAGTGATCATCTCAGTACTTGACTGGTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921670       <-- ATGCAAAGACGACAAACTACTAGTGATCATCTCAATACTTGACTGGTGCA
EX749542       <-- ATGCAAAGACGACAAGCTAATAGTGATCATCTCAGTACTTGACTGGTGCA
EY913632       <-- ATGCAAAGACGACAAACTACTAGTGATCATCTCAGTACTTGACTGGTGCA
FD962135       <-- ATGCAAAGACGACAAACTACTAGTGATCATCTCAGTACTTGACTGGTGCA
EV528781       <-- ATGCAAAGACGACAAACTACTAGTGATCATCTCAGTACTTGACTGGTGCA
EY914354       <-- ATGCAAAGACGACAAACTACTAGTGATCATCTCAGTACTTGACTGGTGCA
FD980745       <-- ATGCAAAGACGACAAACTACTAGTGATCATCTCAGTACTTGACTGGTGCA
EX753207       --> ATGCAAAGACGACAAGCTAATAGTGATCATCTCAGTACTTGACTGGTGCA
EY917778       --> ATGCAAAGACGACAAACTACTAGTGATCATCTCAATACTTGACTGGTGCA
FD976590       --> ATGCAAAGACGACAAACTACTAGTGATCATCTCAGTACTTGACTGGTGCA
EY909836       --> ATGCAAAGACGACAAACTACTAGTGATCATCTCAGTACTTGACTGGTGCA
EY910417       --> ATGCAAAGACGACAAACTACTAGTGATCATCTCAGTACTTGACTGGTGCA
EV532677       --> ATGCAAAGACGACAAACTACTAGTGATCATCTCAGTACTTGACTGGTGCA
FD958743       --> ..................................................

               201    -    251
UN20184        --> AGAATCTCGAGCTGTGCTCCAAGCTTCTCCTCAGCCACCTTCTCAGCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921670       <-- AGAATCTCGAGCTGTGCTCCAAGCTTCTCCTCAGCCACCTTCTCAGCCTT
EX749542       <-- AGAATCTCGAGCTGTGCTCCAAGCTTCTCCTCAGCCACCTTCTCAGCCTT
EY913632       <-- AGAATCTCGAGCTGTGCTCCAAGCTTCTCCTCAGCCACCTTCTCAGCCTT
FD962135       <-- AGAATCTCGAGCTGTGCTCCAAGCTTCTCCTCAGCCACCTTCTCAGCCTT
EV528781       <-- AGAATCTCGAGCTGTGCTCCAAGCTTCTCCTCAGCCACCTTCTCAGCCTT
EY914354       <-- AGAATCTCGAGCTGTGCTCCAAGCTTCTCCTCAGCCACCTTCTCAGCCTT
FD980745       <-- AGAATCTCGAGCTGTGCTCCAAGCTTCTCCTCAGCCACCTTCTCAGCCTT
EX753207       --> AGAATCTCGAGCTGTGCTCCAAGCTTCTCCTCAGCCACCTTCTCAGCCTT
EY917778       --> AGAATCTCGAGCTGTGCTCCAAGCTTCTCCTCAGCCACCTTCTCAGCCTT
FD976590       --> AGAATCTCGAGCTGTGCTCCAAGCTTCTCCTCAGCCACCTTCTCAGCCTT
EY909836       --> AGAATCTCGAGCTGTGCTCCAAGCTTCTCCTCAGCCACCTTCTCAGCCTT
EY910417       --> AGAATCTCGAGCTGTGCTCCAAGCTTCTCCTCAGCCACCTTCTCAGCCTT
EV532677       --> AGAATCTCGAGCTGTGCTCCAAGCTTCTCCTCAGCCACCTTCTCAGCCTT
FD958743       --> ..................................................

               251    -    301
UN20184        --> GGCTCTAAGTTTGTTAAGCTGCTTCTTACGCTCGTAAACAACTTGAGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921670       <-- GGCTCTAAGTTTGTTAAGCTGTTTCTTACGCTCGTAAACAACTTGAGATC
EX749542       <-- GGCTCTAAGTTTGTTAAGCTGCTTCaccttctgtctgtgtgtgtcc....
EY913632       <-- GGCTCTAAGTTTGTTAAGCTGCTTCTTACGCTCGTAAACAACTTGAGATC
FD962135       <-- GGCTCTAAGTTTGTTAAGCTGCTTCTTACGCTCGTAAACAACTTGAGATC
EV528781       <-- GGCTCTAAGTTTGTTAAGCTGCTTCTTACGCTCGTAAACAACTTGAGATC
EY914354       <-- GGCTCTAAGTTTGTTAAGCTGCTTCTTACGCTCGTAAACAACTTGAGATC
FD980745       <-- GGCTCTAAGTTTGTTAAGCTGCTTCTTACGCTCGTAAACAACTTGAGATC
EX753207       --> GGCTCTAAGTTTGTTAAGCTGCTTCaccttctgtctgtgtgtgtcc....
EY917778       --> GGCTCTAAGTTTGTTAAGCTGTTTCTTACGCTCGTAAACAACTTGAGATC
FD976590       --> GGCTCTAAGTTTGTTAAGCTGCTTCTTACGCTCGTAAACAACTTGAGATC
EY909836       --> GGCTCTAAGTTTGTTAAGCTGCTTCTTACGCTCGTAAACAACTTGAGATC
EY910417       --> GGCTCTAAGTTTGTTAAGCTGCTTCTTACGCTCGTAAACAACTTGAGATC
EV532677       --> GGCTCTAAGTTTGTTAAGCTGCTTCTTACGCTCGTAAACAACTTGAGATC
FD958743       --> ..................................................

               301    -    351
UN20184        --> TCTCCTTCCTCTTCGTCTCCAGCTCCTTGATGGTGTCATAGTGGTTCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921670       <-- TCTCCTTCCTCTTCGTCTCCAGCTCCTTGATGGTGTCGTAGTGGTTCCAC  Raphanus raphanistrum subsp. landra
EX749542       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY913632       <-- TCTCCTTCCTCTTCGTCTCCAGCTCCTTGATGGTGTCATAGTGGTTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962135       <-- TCTCCTTCCTCTTCGTCTCCAGCTCCTTGATGGTGTCGTAGTGGTTCCAC  Raphanus raphanistrum subsp. maritimus
EV528781       <-- TCTCCTTCCTCTTCGTCTCCAGCTCCTTGATGGTGTCGTAGTGGTTCCAC  Raphanus raphanistrum subsp. maritimus
EY914354       <-- TCTCCTTCCTCTTCGTCTCCAGCTCCTTGATGGTGTCATAGTGGTTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980745       <-- TCTCCTTCCTCTTCGTCTCCAGCTCCTTGATGGTGTCATAGTGGTTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753207       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY917778       --> TCTCCTTCCTCTTCGTCTCCAGCTCCTTGATGGTGTCGTAGTGGTTCCAC  Raphanus raphanistrum subsp. landra
FD976590       --> TCTCCTTCCTCTTCGTCTCCAGCTCCTTGATGGTGTCATAGTGGTTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909836       --> TCTCCTTCCTCTTCGTCTCCAGCTCCTTGATGGTGTCATAGTGGTTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910417       --> TCTCCTTCCTCTTCGTCTCCAGCTCCTTGATGGTGTCATAGTGGTTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532677       --> TCTCCTTCCTCTTCGTCTCCAGCTCCTTGATGGTGTCGTAGTGGTTCCAC  Raphanus raphanistrum subsp. maritimus
FD958743       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               351    -    401
UN20184        --> CCGACTTCAGAAGAAAGACGGCCCAAAAGACAGTATTTGTGACCAGCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921670       <-- CCGACTTCAGAAGAAAGACGGCCCAGAAGACAGTATTTGTGACCAGCTTG  Raphanus raphanistrum subsp. landra
EX749542       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY913632       <-- CCGACTTCAGAAGAAAGACGGCCCAAAAGACAGTATTTGTGACCAGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962135       <-- CCGACTTCAGAAGAAAGACGGCCCAGAAGACAGTATTTGTGACCAGCTTG  Raphanus raphanistrum subsp. maritimus
EV528781       <-- CCGACTTCAGAAGAAAGACGGCCCAGAAGACAGTATTTGTGACCAGCTTG  Raphanus raphanistrum subsp. maritimus
EY914354       <-- CCGACTTCAGAAGAAAGACGGCCCAAAAGACAGTATTTGTGACCAGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980745       <-- CCGACTTCAGAAGAAAGACGGCCCAAAAGACAGTATTTGTGACCAGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753207       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY917778       --> CCGACTTCAGAAGAAAGACGGCCCAGAAGACAGTATTTGTGACCAGCTTG  Raphanus raphanistrum subsp. landra
FD976590       --> CCGACTTCAGAAGAAAGACGGCCCAAAAGACAGTATTTGTGACCAGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909836       --> CCGACTTCAGAAGAAAGACGGCCCAAAAGACAGTATTTGTGACCAGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910417       --> CCGACTTCAGAAGAAAGACGGCCCAAAAGACAGTATTTGTGACCAGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532677       --> CCGACTTCAGAAGAAAGACGGCCCAGAAGACAGTATTTGTGACCAGCTTG  Raphanus raphanistrum subsp. maritimus
FD958743       --> ...........AGAAAGACGGCCCAAAAGACAGTATTTGTGACCAGCTTG  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN20184        --> AAGCCTCAAGACCTTGAGAGCATCGGGGATGACCATCCTCTTGACCTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921670       <-- AAGCCTCAAGACCTTGAGAGCATCGGGGATGACCATCCTCTTGACCTTGT  Raphanus raphanistrum subsp. landra
EX749542       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY913632       <-- AAGCCTCAAGACCTTCAGAGCATCGGGGATGACCATCCTCTTGACCTTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962135       <-- AAGCCTCAAGACCCTGAGAGCATCGGGGATGACCATCCTCTTGACCTTGT  Raphanus raphanistrum subsp. maritimus
EV528781       <-- AAGCCTCAAGACCTTGAGAGCATCGGGGATGACCATCCTCTTGACCTTGT  Raphanus raphanistrum subsp. maritimus
EY914354       <-- AAGCCTCAAGACCTTCAGAGCATCGGGGATGACCATCCTCTTGACCTTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980745       <-- AAGCCTCAAGACCTTCAGAGCATCGGGGATGACCATCCTCTTGACCTTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753207       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY917778       --> AAGCCTCAAGACCTTGAGAGCATCGGGGATGACCATCCTCTTGACCTTGT  Raphanus raphanistrum subsp. landra
FD976590       --> AAGCCTCAAGACCTTCAGAGCATCGGGGATGACCATCCTCTTGACCTTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909836       --> AAGCCTCAAGACCT....................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910417       --> AAGCCTCAAGACCTTCAGAGCATCGGGGATGACCATCCTCTTGACCTTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532677       --> AAGCCTCAAGACCTTGAGAGCATCGGGGATGACCATCCTCTTGACCTTGT  Raphanus raphanistrum subsp. maritimus
FD958743       --> AAGCCTCAAGACCCTGAGAGCATCGGGGATGACCATCCTCTTGACCTTGT  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN20184        --> CATATGGTGGAGGCACACCTTCAAACACCTTCATGCGTGCAAGTGCAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921670       <-- CATATGGTGGAGGCACACCTTCAAACACCTTCATGCGTGCAAGTGCAGCA  Raphanus raphanistrum subsp. landra
EX749542       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY913632       <-- CATACGGTGGAGGCACACCTTCAAACACCTTCATGCGCGCAAGTGCAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962135       <-- CATATGGTGGAGGCACACCTTCAAACACCTTCATGCGTGCAAGTGCAGCT  Raphanus raphanistrum subsp. maritimus
EV528781       <-- CATATGGTGGAGGCACACCTTCAAACACCTTCATGCGTGCAAGTGCAGCT  Raphanus raphanistrum subsp. maritimus
EY914354       <-- CATACGGTGGAGGCACACCTTCAAACACCTTCATGCGTGCAAGTGCAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980745       <-- CATACGGTGGAGGCACACCTTCAAACACCTTCATGCGTGCAAGTGCAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753207       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY917778       --> CATATGGTGGAGGCACACCTTCAAACACCTTCATGCGTGCAAGTGCAGCA  Raphanus raphanistrum subsp. landra
FD976590       --> CATACGGTGGAGGCACACCTTCAAACACCTTCATGCGTGCAAGTGCAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909836       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910417       --> CATACGGTGGAGGCACACCTTCAAACACCTTCATGCGTGCAAGTGCAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532677       --> CATATGGTGGAGGCACACCTTCAAACACCTTCATGCGTGCAAGTGCAGCT  Raphanus raphanistrum subsp. maritimus
FD958743       --> CATATGGTGGAGGCACACCTTCAAACACCTTCATGCGTGCAAGTGCAGCT  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN20184        --> GCTCCACGCTTCGTTTTGTGTGGAATCATACCGCGAACAGTACGCCAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921670       <-- GCTCCACGCTTCGTTTTGTGTGGAATCATACCGCGAACAGTACGCCAGAA
EX749542       <-- ..................................................
EY913632       <-- GCTCCACGCTTCGTTTTGTGTGGAATCATACCGCGAACAGTACGCCAGAA
FD962135       <-- GCTCCAC...........................................
EV528781       <-- GCTCCACGCTTCGTTTTGTGTGGAATCATACCGCGAACAGTACGCCAGAA
EY914354       <-- GCTCCACGCTTCGTTTTGTGTGGAATCATACCGCGAACAGTACGCCAGAA
FD980745       <-- GCTCCACGCTTCGTTTTGTGTGGAATCATACCGCGAACAGTACGCCAGAA
EX753207       --> ..................................................
EY917778       --> GCTCCACGCTTCGTTTTGTGTGGAATCATACCGCGAACAGTACGCCAGAA
FD976590       --> GCTCCACGCTTCGTTTTGTGTGGAATCATACCGCGAACAGTACGCCAGAA
EY909836       --> ..................................................
EY910417       --> GCTCCACGCTTCGTTTTGTGTGGAATCATACCGCGAACAGTACGCCAGAA
EV532677       --> GCTCCACGCTTCGTTTTGTGTGGAATCATACCGCGAACAGTACGCCAGAA
FD958743       --> GCTCCAC...........................................

               551    -    601
UN20184        --> GATCTTGGAAGGAGCACGGAAGTGAATGGGTCCATGAGAAGGCTTCGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921670       <-- GATCTTGGAAGGAGCACGGAAGTGAATGGGTCCGTGAGAAGGCTTCGTGT  Raphanus raphanistrum subsp. landra
EX749542       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY913632       <-- GATCTTGGAAGGAGCACGGAAGTGAATGGGTCCATGAGAAGGCTTCGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962135       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV528781       <-- GATCTTGGAAGGAGCACGGAAGTGAATGGGTCCGTGAGAAGGCTTCGTGT  Raphanus raphanistrum subsp. maritimus
EY914354       <-- GATCTTGGAAGGAGCACGGAAGTGAATGGGTCCATGAGAAGGCTTCGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980745       <-- GATCTTGGAAGGAGCACGGAAGTGAATGGGTCCATGAGAAGGCTTCGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753207       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY917778       --> GATCTTGGAAGGAGCACGGAAGTGAATGGGTCCGTGA.............  Raphanus raphanistrum subsp. landra
FD976590       --> GATCTTGGAAGGAGCACGGAAGTGAATGGGTCCATGAGAAGGCTTCGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909836       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910417       --> GATCTTGGAAGGAGCACGGAAGTGAATGGGTCCATGAGAAGGCTTCGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532677       --> GATCTTGGAAGGAGCACGGAAGTGAATGGGTCCGTGAGAAGGCTTCGTGT  Raphanus raphanistrum subsp. maritimus
FD958743       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN20184        --> TCATACGTTTGCGAAGGAACCTCATGTACTTCATTTTCTGCCGAACGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921670       <-- TCATACGTTTGCGAAGGAACCTCATGTACTTCATTTTCTGGCGAACGAGT  Raphanus raphanistrum subsp. landra
EX749542       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY913632       <-- TCATACGTTTGCGAAGGAACCTCATGTACTTCc.................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962135       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV528781       <-- TCATACGTTTGCGAAGGAACCTCATGTACTTCATTTTCTGGCGAACGAGT  Raphanus raphanistrum subsp. maritimus
EY914354       <-- TCATACGTTTGCGAAGGAACCTCATGTACTTCATTTTCTGCCGAACGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980745       <-- TCATACGTTTGCGAAGGAACCTCATGTACTTCATTTTCTGCCGAACGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753207       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY917778       --> ..................................................  Raphanus raphanistrum subsp. landra
FD976590       --> TCATACGTTTGCGAAGGAACCTCATGTACTTCATTTTCTGCCGAACGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909836       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910417       --> TCATACGTTTGCGAAGGAACCTCATGTACTTCATTTTCTGCCGAACGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532677       --> TCATACGTTTGCGAAGGAACCTCATGTACTTCATTTTCTGGCGAACGAGT  Raphanus raphanistrum subsp. maritimus
FD958743       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN20184        --> CCACCGGAGAGGCAAATCTCCTCGCATCTAACGATGACGACCTTCTGCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921670       <-- CCACCGGAGAGGCAAATC---TCGCATCTAACGATGACGACCTTCTGGCC  Raphanus raphanistrum subsp. landra
EX749542       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY913632       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962135       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV528781       <-- CCACCGGAGAGGCAAATCTCCTCGCACCTGACGATGACGACCTTCTGCCC  Raphanus raphanistrum subsp. maritimus
EY914354       <-- CCACCGGAGAGGCAAATCTCCTCGCATCTAACGATGACGACCTTCTGCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980745       <-- CCACCGGAGAGGCAAATCTCCTCGCATCTAACGATGACGAACTTCTGCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753207       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY917778       --> ..................................................  Raphanus raphanistrum subsp. landra
FD976590       --> CCACCGGAGAGGCAAATCTCCTCGCATCTAACGATGACGAACTTCTGCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909836       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910417       --> CCACCGGAGAGGCAAATCTCCTCGCATCTAACGATGACGACCTTCTGCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532677       --> CCACCGGAGAGGCAAATCTCCTCGCACCTGACGATGACGACCTTCTGCCC  Raphanus raphanistrum subsp. maritimus
FD958743       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN20184        --> GTTGAGCAGCTCCTTGGCCACGATCGACGCCAGACGCCCCAGCATGTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921670       <-- ATTGAGCAGCTCCTTGGCCACGATCGACGCCAGACGCCCCAGCATGTGGT  Raphanus raphanistrum subsp. landra
EX749542       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY913632       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962135       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV528781       <-- ATTGAGCAGCTCCTTGGCCACGATCGACGCCAGACGCCCCAGCATGTGGT  Raphanus raphanistrum subsp. maritimus
EY914354       <-- GTTGAGCAGCTCCTTGGCCACGATCGACGCCAAACGCCCCAGCATGTGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980745       <-- GTTGAGCAGCTCCTTGGCCACGATCGACGCCAAACGCCCCAGCATGTGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753207       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY917778       --> ..................................................  Raphanus raphanistrum subsp. landra
FD976590       --> GTTGA.............................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909836       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910417       --> GTTGAGCAGCTCCTTGGCCACGATCGACGCCAAACGCCCCAGCATGTGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532677       --> ATTGAGCAGCTCCTTGGCCACGATCGACGCCAGACGCCCCAGCATGTGGT  Raphanus raphanistrum subsp. maritimus
FD958743       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN20184        --> GTCGCGCGTCGACGACCACGCGCTTCGAGCATATACCTGATCCCGACACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921670       <-- GGCGCGCGTCGACGACCACGCGCTTCGAGCATATACCTGATCCCGACACC  Raphanus raphanistrum subsp. landra
EX749542       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY913632       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962135       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV528781       <-- GGCGCGCGTCGACGACCACGCGCTTCGAGCATATACCTGATCCCGACACC  Raphanus raphanistrum subsp. maritimus
EY914354       <-- GTCGCGCGTCGACGACAACGCGCTTCGAGCATATACCTGATCCCGACACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980745       <-- GTCGCGCGTCGACGACAACGCGCTTCGAGCATATACCTGATCCCGACACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753207       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY917778       --> ..................................................  Raphanus raphanistrum subsp. landra
FD976590       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909836       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910417       --> GTCGCGCGTCGACGACAACGCGCTTCGAGCATATACCTGATCCCGACACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532677       --> GGCGCGCGTCGACGACCACGCGCTTCGAGCATATACCTGATCCCGACACC  Raphanus raphanistrum subsp. maritimus
FD958743       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               801    -    851
UN20184        --> ATTTTTGCTTCACCTTCTGTCTGTGTGTGTGTCCCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921670       <-- ATTTTTGCTTCACCTTCTGTCTGTGTGTGcttcc...
EX749542       <-- .....................................
EY913632       <-- .....................................
FD962135       <-- .....................................
EV528781       <-- ATTTTTGCTTCACATTCTGTCTGTGTGTGTGTCCCCT
EY914354       <-- ATTTTTGCTTCACCTTCTGTCTGTATGTtc.......
FD980745       <-- ATTTTTGCTTCACCTTCTGTCTGTGTGTtccc.....
EX753207       --> .....................................
EY917778       --> .....................................
FD976590       --> .....................................
EY909836       --> .....................................
EY910417       --> ATTTTTGCTTCACCTTCTGTCTGTATGTtc.......
EV532677       --> ATTTTTGCTTCACATTCTGTCTGTGTGTGTGTCCCCT
FD958743       --> .....................................