Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN20227

               1      -     51
UN20227        --> GGGACGCTACAGTTCTCAAGTGAAACAAAGCAACAGAAAGAAGCAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- ..................................................
EV542874       <-- ..................................................
EX909866       <-- ..................................................
EX777158       <-- ..................................................
EY943664       <-- ..................................................
FD936653       <-- ..................................................
EW719114       <-- ..................................................
FD979378       --> GGGACGCTACAGTTCTCAAGTGAAACAAAGCAACAGAAAGAAGCAAAAAA
FD979539       --> GGGACGCTACAGTTCTCAAGTGAAACAAAGCAACAGAAAGAAGCAAAAAA
EW714913       --> ....................gGAAACAAAGCAACAGAAAGAAGCAAAAAA
EX906304       --> ...................ggGAAACAAAGCAACAGAAAGAAGCAAAAAA
EY947837       --> ..................gggGAAACAAAGCAACAGAAAGAAGCAAAAAA
FD940874       --> ...................ggGAAACAAAGCAACAGAAAGAAGCAAAAAA
EV568526       --> ..................................AGAAAGAAGCAAAAAA
EV538980       --> ..................................................

               51     -    101
UN20227        --> AAATGGCTATTCCTATAAGATTTTTAACTATAGCTCTCGTGATCCTCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- ..................................................
EV542874       <-- ..................................................
EX909866       <-- ..................................................
EX777158       <-- ..................................................
EY943664       <-- ..................................................
FD936653       <-- ..................................................
EW719114       <-- ..................................................
FD979378       --> AA-TGGCTATTCCTATAAGATTTTTGACTATAGCTCTCGTGATCCTCTCC
FD979539       --> AA-TGGCTATTCCTATAAGATTTTTGACTATAGCTCTCGTGATCCTCTCC
EW714913       --> AAATGGCTATTCCTATAAGATTTTTAACTATAGCTCTCGTGATCCTCTCC
EX906304       --> AAA-GGCTATTCCTATAAGATTTTTAACTATAGCTCTCGTGATCCTCTCC
EY947837       --> AAATGGCTATTCCTATAAGATTTTTAACTATAGCTCTCGTGATCCTCTCC
FD940874       --> A--TGGCTATTCCTATAAGATTTTTAACTATAGCTCTCGTGATCCTCTCC
EV568526       --> AAATGGCTATTCCTATAAGATTTTTAACTATAGCTCTCGTGATCCTCTCC
EV538980       --> ..................................................

               101    -    151
UN20227        --> GCGTTACTACTTTCCTCGTCTCTCGGCGGCGTTACAGCGACGGAGACGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- ..................................................
EV542874       <-- ..................................................
EX909866       <-- ..................................................
EX777158       <-- ..................................................
EY943664       <-- ..................................................
FD936653       <-- ..................................................
EW719114       <-- ..................................................
FD979378       --> GCGTTACTACTTTCCTCGTCTCTCGGCGGCGTTACAGCGACGGAGACGAA
FD979539       --> GCGTTACTACTTTCCTCGTCTCTCGGCGGCGTTACAGCGACGGAGACGAA
EW714913       --> GCGTTACTACTTTCCTCGTCTCTCGGCGGCGTTACAGCGACGGAGACGAA
EX906304       --> GCGTTACTACTTTCCTCGTCTCTCGGCGGCGTTACAGCGACGGAGACGAA
EY947837       --> GCGTTACTACTTTCCTCGTCTCTCGGCGGCGTTACAGCGACGGAGACGAA
FD940874       --> GCGTTACTACTTTCCTCGTCTCTCGGCGGCGTTACAGCGACGGAGACGAA
EV568526       --> GCGTTACTACTTTCCTCGTCTCTCGGCGGCGTTACAGCGACGGAGACGAA
EV538980       --> ..................................................

               151    -    201
UN20227        --> AGGCAATGAGGCGGAAGTGCGCCGGATGTACGAGCAGTGGCTTGTGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542874       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX909866       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX777158       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY943664       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD936653       <-- ..................................................  Raphanus sativus var. oleiformis
EW719114       <-- ..................................................  Raphanus sativus var. oleiformis
FD979378       --> AGGCAATGAGGCGGAAGTGCGCCGGACGTACGAGCTGTGGCTTGTGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD979539       --> AGGCAATGAGGCGGAAGTGCGCCGGACGTACGAGCTGTGGCTTGTGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714913       --> AGGCAATGAGGCGGAAGTGCGCCGGATGTACGAGCAGTGGCTTGTGGAGA  Raphanus sativus var. oleiformis
EX906304       --> AGGCAATGAGGCGGAAGTGCGCCGGATGTACGAGCAGTGGCTTGTGGAGA  Raphanus sativus cv Rat-Tail Radish #3870
EY947837       --> AGGCAATGAGGCGGAAGTGCGCCGGATGTACGAGCAGTGGCTTGTGGAGA  Raphanus sativus cv Rat-Tail Radish #3870
FD940874       --> AGGCAATGAGGCGGAAGTGCGCCGGATGTACGAGCAGTGGCTTGTGGAGA  Raphanus sativus var. oleiformis
EV568526       --> AGGCAGTGAGGCGGAAGTGCGCCGGACGTACGAGCTGTGGCTTGTGGAGA  Raphanus raphanistrum subsp. landra
EV538980       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               201    -    251
UN20227        --> ACCGGAAGAACTCTAACGCTCTTGGAGAGAAAGAGAGACGTTTCAATATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542874       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX909866       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX777158       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY943664       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD936653       <-- ..................................................  Raphanus sativus var. oleiformis
EW719114       <-- ..................................................  Raphanus sativus var. oleiformis
FD979378       --> ACCGGAAGAACTATAACGCTCTTGGAGAGAAAGAGAGACGTTTCAATATC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD979539       --> ACCGGAAGAACTATAACGCTCTTGGAGAGAAAGAGAGACGTTTCAATATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714913       --> ACCGGAAGAACTCTAACGCTCTTGGAGAGAAAGAGAGACGTTTCAATATC  Raphanus sativus var. oleiformis
EX906304       --> ACCGGAAGAACTCTAACGCTCTTGGAGAGACAGAGAGACGTTTCAATATC  Raphanus sativus cv Rat-Tail Radish #3870
EY947837       --> ACCGGAAGAACTCTAACGCTCTTGGAGAGAAAGAGAGACGTTTCAATATC  Raphanus sativus cv Rat-Tail Radish #3870
FD940874       --> ACCGGAAGAACTCTAACGCTCTTGGAGAGAAAGAGAGACGTTTCAATATC  Raphanus sativus var. oleiformis
EV568526       --> ACCGGAAGAACTATAACGCTCTTGGAGAGAAAGAGAGACGTTTCAATATC  Raphanus raphanistrum subsp. landra
EV538980       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               251    -    301
UN20227        --> TTCAAAGACAACTTGAAGTTGATAGAAGCACACAACTCGGTCCCGGACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- ..................................................
EV542874       <-- ..................................................
EX909866       <-- ..................................................
EX777158       <-- ..................................................
EY943664       <-- ..................................................
FD936653       <-- ..................................................
EW719114       <-- ..................................................
FD979378       --> TTCAAAGACAACTTGAAGTTGATAGAAGCACACAACTCGGTCCCGGACCG
FD979539       --> TTCAAAGACAACTTGAAGTTGATAGAAGCACACAACTCGGTCCCGGACCG
EW714913       --> TTCAAAGACAACTTGAAGTTGATAGAAGCACACAACTCGGTCCCGGACCG
EX906304       --> TTTAAAGACAACTTGAAGTTGATAGAAGCACACAACTCGGTCCCGGACCG
EY947837       --> TTCAAAGACAACTTGAAGTTGATAGAAGCACACAACTCGGTCCCGGACCG
FD940874       --> TTCAAAGACAACTTGAAGTTGATAGAAGCACACAACTCGGTCCCGGACCG
EV568526       --> TTCAAAGACAACTTGAAGTTGATAGAAGCACACAACTCGGTCCCGGACCG
EV538980       --> ..................................................

               301    -    351
UN20227        --> GACTTACGAACTCGGATTGACCCGGTTTGCAGATCTAACCGACGATGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- ..................................................
EV542874       <-- ..................................................
EX909866       <-- ..................................................
EX777158       <-- ..................................................
EY943664       <-- ..................................................
FD936653       <-- ..................................................
EW719114       <-- ..................................................
FD979378       --> GACTTACGAACTCGGATTGACCCGGTTTGCAGATCTAACCGACGATGAGT
FD979539       --> GACTTACGAACTCGGATTGACCCGGTTTGCAGATCTAACCGACGATGAGT
EW714913       --> GACTTACGAACTCGGATTGACCCGGTTTGCAGATCTAACCGACGATGAGT
EX906304       --> GACTTACGAACTCGGATTGACCCGGTTTGCAGATCTAACCGACGATGAGT
EY947837       --> GACTTACGAACTCGGATTGACCCGGTTTGCAGATCTAACCGACGATGAGT
FD940874       --> GACTTACGAACTCGGATTGACCCGGTTTGCAGATCTAACCGACGATGAGT
EV568526       --> GACTTACGAACTCGGATTGACCCGGTTTGCAGATCTAACCGACGATGAGT
EV538980       --> ..................................................

               351    -    401
UN20227        --> TTCGAGCTATTCACTTAAGGGGGAAGATGGTAAGGACAAGCGATCCAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- ..................................................
EV542874       <-- ..................................................
EX909866       <-- ..................................................
EX777158       <-- ..................................................
EY943664       <-- ..................................................
FD936653       <-- ..................................................
EW719114       <-- ..................................................
FD979378       --> TTCGAGCTATTCACTTAAGGGGGAAGATGGTAAGGACAAGCGATCCAGTG
FD979539       --> TTCGAGCTATTCACTTAAGGGGGAAGATGGTAAGGACAAGCGATCCAGTG
EW714913       --> TTCGAGCTATTCACTTAAGGGGGAAGATGGTAAGGACAAGCGATCCAGTG
EX906304       --> TTCGAGCTATTCACTTAAGGGGGAAGATGGTAAGGACAAGCGATCCAGTG
EY947837       --> TTCGAGCTATTCACTTAAGGGGGAAGATGGTAAGGACAAGCGATCCAGTG
FD940874       --> TTCGAGCTATTCACTTAAGGGGGAAGATGGTAAGGACAAGCGATCCAGTG
EV568526       --> TTCGAGCTATTCACTTAAGGGGGAAGATGGTAAGGACAAGCGATCCAGTG
EV538980       --> .............................................attTG

               401    -    451
UN20227        --> ATAGGAGATAGGTACTT-GTACAAAGAAGGAGACGTTTT-G-CCCGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- ....................................TTT-G-CCCGATGA
EV542874       <-- ..................................................
EX909866       <-- ..................................................
EX777158       <-- ..................................................
EY943664       <-- ..................................................
FD936653       <-- ..................................................
EW719114       <-- ..................................................
FD979378       --> ATAGGAGATAGGTACTT-GTACGAAGAAGGAGACGCTTT-G-CCCGAGGA
FD979539       --> ATAGGAGATAGGTACTT-GTACGAAGAAGGAGACGCTTT-G-CCCGAGGA
EW714913       --> ATAGGAGATAGGTACTT-GTACAAAGAAGGAGACGTTTT-G-CCCGAGGA
EX906304       --> ATAGGAGATAGGTACTT-GTACAAAGAAGGAGACGTTTT-G-CCCGATGA
EY947837       --> ATAGGAGATAGGTACTT-GTACAAAGAAGGAGACGTTTT-G-CCCGAGGA
FD940874       --> ATAGGAGATAGGTACTT-GTACAAAGAAGGAGACGTTTT-G-CCCGAGGA
EV568526       --> ATAGGAGATAGGTACTT-GTACAAAGAAGGAGACGTTTT-G-CCCGAGGA
EV538980       --> ATAGGAGATAGGTACTTTGTACAAAGAAGGAGACGTTTTTGCCCCGAGGA

               451    -    501
UN20227        --> AGTT-GACTGGAGAGAGAAAGGTGCAGTT-GTTCCGGTCAAAAATCAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- AGT--GACTG-AGAGAGAAAGGTGCAGTT-GTTCCGGTCAAAAATCAAGG
EV542874       <-- ...............................................AGG
EX909866       <-- ..................................................
EX777158       <-- ..................................................
EY943664       <-- ..................................................
FD936653       <-- ..................................................
EW719114       <-- ..................................................
FD979378       --> AGTT-GACTGGAGAGAGAAAGGTGCAGTT-GTTCCGGTCAAAAACCAAGG
FD979539       --> AGTT-GACTGGAGAGAGAAAGGTGCAGTT-GTTCCGGTCAAAAACCAAGG
EW714913       --> AGTT-GACTGGAGAGAGAAAGGTGCAGTT-GTTCCGGTCAAAAATCAAGG
EX906304       --> AGTT-GACTGGAGAGAGAAAGGTGCAGTT-GTTCCGGTCAAAAATCAAGG
EY947837       --> AGTT-GACTGGAGAGAGAAAGGTGCAGTT-GTTCCGGTCAAAAATCAAGG
FD940874       --> AGTT-GACTGGAGAGAGAAAGGTGCAATT-GTTCCGGTCAAAAATCAAGG
EV568526       --> AGTT-GACTGGAGAGAGAAAGGTGCAGTT-GTTCCGGTCAAAAACCAAGG
EV538980       --> AGTTTGACTGGAGAGAGAAAGGTGCAGTTTGTTCCGGTCAAAAATCAAGG

               501    -    551
UN20227        --> AGACTGTGGAGGTTGTTGGGCGTTCGCGGCGGTTGGAGCCGTGGAGGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- AGACTGTGGAGGTTGTTGGGCGTTCGCGGCGGTTGGAGCCGTGGAGGGTT
EV542874       <-- AGACTGTGGAGGTTGTTGGGCGTTCGCGGCGGTTGGAGCCATGGAGGGTT
EX909866       <-- .....................................GCCGTGGAGGGTT
EX777158       <-- ..................................................
EY943664       <-- ..................................................
FD936653       <-- ..................................................
EW719114       <-- ..................................................
FD979378       --> AGACTGTGGAGGTTGTTGGGCGTTCGCGTCGGTTGGAGCCGTAGAGGGTT
FD979539       --> AGACTGTGGAGGTTGTTGGGCGTTCGCGTCGGTTGGAGCCGTAGAGGGTT
EW714913       --> AGACTGTGGAGGTTGTTGGGCGTTCGCGGCGGTTGGAGCCGTGGAGGGTT
EX906304       --> AGACTGTGGAGGTTGTTGGGCGTTCGCGGCGGTTGGAGCCGTGGAGGGTT
EY947837       --> AGACTGTGGAGGTTGTTGGGCGTTCGCGGCGGTTGGAGCCGTGGAGGGTT
FD940874       --> AGACTGTGGAGGTTGTTGGGCGTTCGCGGCGGTTGGAGCCGTGGAGGGTT
EV568526       --> AGACTGTGGAGGTTGTTGGGCGTTCGCGGCGGTTGGAGCGGTGGAGGGTT
EV538980       --> AGACTGTGGAGGTTGTTGGGCGTTCGCGGCGGTTGGAGCCATGGAGGGTT

               551    -    601
UN20227        --> TAAACAAGATCAAGACAGGAGAGTTAGTATCTTT-GTCGGAACAAGAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- TAAACAAGATCAAGACAGGAGAGTTAGTATCTTT-GTCGGAACAAGAACT
EV542874       <-- TAAACAAGATCAAGACAGGAGAGTTAGTATCTTT-GTCGGAACAAGAACT
EX909866       <-- TAAACAAGATCAAGACAGGAGAGTTAGTATCTTT-GTCGGAACAAGAACT
EX777158       <-- ............AGACAGGAGAGTTAGTATCTTT-GTCGGAACAAGAACT
EY943664       <-- ..................................................
FD936653       <-- ..................................................
EW719114       <-- ..................................................
FD979378       --> TAAACAAGATCAAGACAGGAGAGTTAGTATCTTT-GTCGGAACAAGAACT
FD979539       --> TAAACAAGATCAAGACAGGAGAGTTAGTATCTTT-GTCGGAACAAGAACT
EW714913       --> TAAACAAGATCAAGACAGGAGAGTTAGTATCTTT-GTCGGAACAAGAACT
EX906304       --> TAAACAAGATCAAGACAGGAGAGTTAGTATCTTT-GTCGGAACAAGAACT
EY947837       --> TAAACAAGATCAAGACAGGAGAGTTAGTATCTTT-GTCGGAACAAGAACT
FD940874       --> TAAACAAGATCAAGACAGGAGAGTTAGTATCTTT-GTCGGAACAAGAACT
EV568526       --> TAAACAAGATCAAGACAGGAGAGTTAGTATCTTT-GTCGGAACAAGAACT
EV538980       --> TAAACAAGATCAAGACAGGAGAGTTAGTATCTTTTGTCGGAACAAGAACT

               601    -    651
UN20227        --> CTTGGATTGCGACAGAGGGGAAGATTCGGGAAACTTTGGATGTTTAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- CTTGGATTGCGACAGAGGGGAAGATTCGGGAAACTTTGGATGTTTAGGAG
EV542874       <-- CTTGGATTGCGACAGAGGGGAAGATTCGGGAAACTTTGGATGTTTAGGAG
EX909866       <-- CTTGGATTGCGACAGAGGGGAAGATTCGGGAAACTTTGGATGTTTAGGAG
EX777158       <-- CTTGGATTGCGACAGAGGGGAAGATTCGGGAAACTTTGGATGTTTAGGAG
EY943664       <-- .........CGACAGAGGGGAAGATTCGGGAAACTTTGGATGTTTAGGAG
FD936653       <-- ..............................AAACTTTGGATGTTTAGGAG
EW719114       <-- ..................................................
FD979378       --> CTTGGATTGCGACAGAGGGGAAGATTCGGGAAACTTTGGATGTTTAGGAG
FD979539       --> CTTGGATTGCGACAGAGGGGAAGATTCGGGAAACTTTGGATGTTTAGGAG
EW714913       --> CTTGGATTGCGACAGAGGGGAAGATTCGGGAAACTTTGGATGTTTAGGAG
EX906304       --> CTTGGATTGCGACAGAGGGGAAGATTCGGGAAACTTTGGATGT.......
EY947837       --> CTTGGATTGCGACAGAGGGGAAGATTCGGGAAACTTTGGATGTTTAGGAG
FD940874       --> CTTGGATTGCGACAGAGGGGAAGATTCGGGAAACTTTGGATGTTTAG-A-
EV568526       --> CTTGGATTGCGACAGAGGGGAAGATTCGGGAAACTTTGGATGTTTAGGAG
EV538980       --> CTTGGATTGCGACAGAGGGGAAGATTCGGGAAACTTTGGATGTTTAGGAG

               651    -    701
UN20227        --> GTAACGCAGCCGATGCTTTTGAGTTCATTGTGGATAACGATGGTATTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- GTAACGCAGCCGATGCTTTTGAGTTCATTGTGGATAACGATGGTATTGTA
EV542874       <-- GTAACGCAGCCGATGCTTTTGAGTTCATTGTGGATAACGATGGTATTGTA
EX909866       <-- GTAACGCAGCCGATGCTTTTGAGTTCATTGTGGATAACGATGGTATTGTA
EX777158       <-- GTAACGCAGCCGATGCTTTTGAGTTCATTGTGGATAACGATGGTATTGTA
EY943664       <-- GTAACGCAGCCGATGCTTTTGAGTTCATTGTGGATAACGATGGTATTGTA
FD936653       <-- GTAACGCAGCCGATGCTTTTGAGTTCATTGTGGATAACGATGGTATTGTA
EW719114       <-- .........CCGATGCTTTTGAGTTCATTGTGGATAACGATGGTATTGTA
FD979378       --> GTAACGCAGCCGATGCTTTTGAGTTCATTGTGGATAACGATGGTAT....
FD979539       --> -TAACGCAGCCGATGCTTTTGAGTTCATTGTGGATAACGATGGTATTGTA
EW714913       --> GTAACGCAGCCGATGCTTTTGAGTTCATTGTGGATAACGATGGTATTGTA
EX906304       --> ..................................................
EY947837       --> GTAACGCAGCCGATGCTTTTGAGTTCATTGTGGATAACGATGGTATTGTA
FD940874       --> GTAACGCAGCCGATGCTTTTGAGTTCATTGTGGATAACGATGGTATT...
EV568526       --> GTAACGCAGCCGACGCTTTTGAGTTCATTATCGAAAACAGTGGTATTGTA
EV538980       --> -TAACGCAGCCGATGCTTTTGAGTTCATTGTGGATAACGATGGTATTGTA

               701    -    751
UN20227        --> ACGGATAAAGTTTACCCTTATACTGAGAATGATACCGCCGCGTGCAAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- ACGGATAAAGTTTACCCTTATACTGAGAATGATACCGCCGCGTGCATGGC
EV542874       <-- ACGGATAAAGTTTACCCTTATACTGAGAATGATACCGCCGCGTGCAAGGC
EX909866       <-- ACGGATAAAGTTTACCCTTATACTGAGAATGATACCGCCGCGTGCATGGC
EX777158       <-- ACGGATAAAGTTTACCCTTATACTGAGAATGATACCGCCGCGTGCAAGGC
EY943664       <-- ACGGATAAAGTTTACCCTTATACTGAGAATGATACCGCCGCGTGCAAGGC
FD936653       <-- ACGGATAAAGTTTACCCTTATACTGAGAATGATACCGCCGCGTGCAAGGC
EW719114       <-- ACGGATAAAGTTTACCCTTATACTGAGAATGATACCGCCGCGTGCAAGGC
FD979378       --> ..................................................
FD979539       --> ACGGATAAAGTTTACCCTTATACTGAGA-TGATACCGCCGCGTGCAAG-C
EW714913       --> ACGGATAAAGTTTACCCTTATACTGAGAATGATACCGCCGCGTGCAAG-C
EX906304       --> ..................................................
EY947837       --> ACGGATAAAGTT-ACCCTTATACTGAGA-TGATACCGCCGCGTGCAAG-C
FD940874       --> ..................................................
EV568526       --> ACGGATAAAGTTTACCCTTATACTGAGAATGATACCGCCGCGTGCAAG-C
EV538980       --> ACGGATAAAGTTTACCCTTATACTGAGAATGATACCGCCGCGTGCAAG-C

               751    -    801
UN20227        --> CATTGAGATGGTTACCACTCGGTATGTTACCATTGATAGTTATGAGG-AT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- CATTGAGATGGTTACCACTCGGTATGTTACCATTGATAGTTATGAGG-AT
EV542874       <-- CATTGAGATGGTTACCACTCGGTATGTTACCATTGATAGTTATGAGGGAT
EX909866       <-- CATTGAGATGGTTACCACTCGGTATGTTACCATTGATAGTTATGAGG-AT
EX777158       <-- CATTGAGATGGTTACCACTCGGTATGTTACCATTGATAGTTATGAGG-AT
EY943664       <-- CATTGAGATGGTTACCACTCGGTATGTTACCATTGATAGTTATGAGG-AT
FD936653       <-- CATTGAGATGGTTACCACTCGGTATGTTACCATTGATAGTTATGAGG-AT
EW719114       <-- CATTGAGATGGTTACCACTCGGTATGTTACCATTGATAGTTATGAGG-AT
FD979378       --> ..................................................
FD979539       --> CATTGAGATGGTTACCACTCGGTATGT-ACCATTGA..............
EW714913       --> CATTGAGATGGTTACCACTCGGTATGTTACCATTGATAGTTATGAGG-AT
EX906304       --> ..................................................
EY947837       --> CATTGAGATGGTTACCACTCGGTATGT-ACCATTGATAGTTA........
FD940874       --> ..................................................
EV568526       --> CATTGAGATGGTTACCACTCGGTATGTTACCATTGATAGTTATGAGG-AT
EV538980       --> CATTGAGATGGTTACCACTCGGTATGTTACCATTGATAGTTATGAG--AT

               801    -    851
UN20227        --> GCTCCACATAACGATGAGATGTCTTTGAAGAAGG-CTGTCGCACATCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- GCTCCACATAACGATGAGATGTCCTTGAAGAAGG-CTGTTGCGCATCAAC
EV542874       <-- GCTCCACATAACGATGAGATGTCTTTGAAGAAGGGCTGTCGCACATCAAC
EX909866       <-- GCTCCACATAACGATGAGATGTCCTTGAAGAAGG-CTGTTGCGCATCAAC
EX777158       <-- GCTCCACATAACGATGAGATGTCTTTGAAGAAGG-CTGTTGCACATCAAC
EY943664       <-- GCTCCACATAACGATGAGATGTCTTTGAAGAAGG-CTGTCGCACATCAAC
FD936653       <-- GCTCCACATAACGATGAGATGTCTTTGAAGAAGG-CTGTCGCACATCAAC
EW719114       <-- GCTCCACATAACGATGAGATGTCTTTGAAGAAGG-CTGTCGCACATCAAC
FD979378       --> ..................................................
FD979539       --> ..................................................
EW714913       --> GCTCCACATAACGATGAGATGTCTTTGAAGAAG--CTGTCGCACATCAAC
EX906304       --> ..................................................
EY947837       --> ..................................................
FD940874       --> ..................................................
EV568526       --> GCTCCACATAACGATGAGATGTCTTTGA......................
EV538980       --> GCTC-ACATAACGATGAGATGTCTTTGAAGAAG--CTGTCGCACATCAAC

               851    -    901
UN20227        --> CTATTAGTGTTATGATTGAAGCCGAAAATATGAAACTCTACAAATCTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- CTATTAGTGTTATGATTGAAGCCGAAAATACGAAACTCTACAAATTTGGT
EV542874       <-- CTATTAGTGTTATGATTGAAGCCGAAAATATGAAACTCTACAAATCTGGT
EX909866       <-- CTATTAGTGTTATGATTGAAGCCGAAAATACGAAACTCTACAAATCTGGT
EX777158       <-- CTATTAGTGTTATGATTGAAGCCGAAAATATGAAACTCTACAAATCTGGT
EY943664       <-- CTATTAGTGTTATGATTGAAGCCGAAAATATGAAACTCTACAAATCTGGT
FD936653       <-- CTATTAGTGTTATGATTGAAGCCGAAAATATGAAACTCTACAAATCTGGT
EW719114       <-- CTATTAGTGTTATGATTGAAGCCGAAAATATGAAACTCTACAAATCTGGT
FD979378       --> ..................................................
FD979539       --> ..................................................
EW714913       --> CTATTAGTGTTATGATTGAAGCCGAAAATATGAAACTCTA..........
EX906304       --> ..................................................
EY947837       --> ..................................................
FD940874       --> ..................................................
EV568526       --> ..................................................
EV538980       --> CTATTAGTGTTATGATTGAAGCCGAAAAT.....................

               901    -    951
UN20227        --> GTGTTTACAGGGCCATGTGATCATTGGTATGGAAACCACAATGTGGTAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- GTGTTTACAGGGCCATGTGATCATTGGTATGGAAACCACAATGTGGTAGT
EV542874       <-- GTGTTTACAGGACCATGTGATCATTGGTATGGAAACCACAATGTGGTAGT
EX909866       <-- GTGTTTACAGGGCCATGTGATCATTGGTATGGAAACCACAATGTGGTAGT
EX777158       <-- GTGTTTACAGGACCATGTGATCATTGGTATGGAAACCACAATGTGGTAGT
EY943664       <-- GTGTTTACAGGGCCATGTGATCATTGGTATGGAAACCACAATGTGGTAGT
FD936653       <-- GTGTTTACAGGGCCATGTGATCATTGGTATGGAAACCACAATGTGGTAGT
EW719114       <-- GTGTTTACAGGGCCATGTGATCATTGGTATGGAAACCACAATGTGGTAGT
FD979378       --> ..................................................
FD979539       --> ..................................................
EW714913       --> ..................................................
EX906304       --> ..................................................
EY947837       --> ..................................................
FD940874       --> ..................................................
EV568526       --> ..................................................
EV538980       --> ..................................................

               951    -   1001
UN20227        --> TGTGGGGTATGGAACGACAGAAAGAGGTGAAGACTACTGGATTATCCGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- TGTGGGGTATGGAACGACAGAAAGAGGTGAAGACTACTGGATTATCCGTA
EV542874       <-- TGTGGGGTATGGAACGACAGAAAGAGGTGAAGACTACTGGATTATCCGTA
EX909866       <-- TGTGGGGTATGGAACGACAGAAAGAGGTGAAGACTACTGGATTATCCGTA
EX777158       <-- CGTGGGGTATGGAACGACAGAAAAAGGTGAAGACTACTGGATTATTCGTA
EY943664       <-- TGTGGGGTATGGAACGACAGAAAGAGGTGAAGACTACTGGATTATCCGTA
FD936653       <-- TGTGGGGTATGGAACGACAGAAAGAGGTGAAGACTACTGGATTATCCGTA
EW719114       <-- TGTGGGGTATGGAACGACAGAAAGAGGTGAAGACTACTGGATTATCCGTA
FD979378       --> ..................................................
FD979539       --> ..................................................
EW714913       --> ..................................................
EX906304       --> ..................................................
EY947837       --> ..................................................
FD940874       --> ..................................................
EV568526       --> ..................................................
EV538980       --> ..................................................

               1001   -   1051
UN20227        --> ACTCATGGGGAGCAAACTGGGGTGAAAGTGGATACATTAAGCTTCAGCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- ACTCATGGGGAGCAAACTGGGGTGAAAGTGGATACATTAAGCTTCAGCGT
EV542874       <-- ACTCATGGGGAGCAAACTGGGGTGAAAGTGGATACATTAAGCTTCAGCGT
EX909866       <-- ACTCATGGGGAGCAAACTGGGGTGAAAGTGGATACATTAAGCTTCAGCGT
EX777158       <-- ACTCATGGGGAGCAAACTGGGGTGAAAGTGGATACATTAAGCTTCAACGT
EY943664       <-- ACTCATGGGGAGCAAACTGGGGTGAAAGTGGATACATTAAGCTTCAGCGT
FD936653       <-- ACTCATGGGGAGCAAACTGGGGTGAAAGTGGATACATTAAGCTTCAGCGT
EW719114       <-- ACTCATGGGGAGCAAACTGGGGTGAAAGTGGATACATTAAGCTTCAGCGT
FD979378       --> ..................................................
FD979539       --> ..................................................
EW714913       --> ..................................................
EX906304       --> ..................................................
EY947837       --> ..................................................
FD940874       --> ..................................................
EV568526       --> ..................................................
EV538980       --> ..................................................

               1051   -   1101
UN20227        --> AACTTCCACAACTCAACTGGGAATTGTGGAGTCGCAATACGGCCTGTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- AACTTCCACAACTCAACTGGGAATTGTGGAGTCGCAATACGGCCTGTGTA
EV542874       <-- AACTTCCACAACTCAACTGGGAATTGTGGAGTCGCAATACGGCCTGTGTA
EX909866       <-- AACTTCCACAACTCAACTGGGAATTGTGGAGTCGCAATACGGCCTGTGTA
EX777158       <-- AACTTCCACAACTCAACAGGAAATTGTGGAGTCGTAATACGGCCTGTGTA
EY943664       <-- AACTTCCACAACTCAACTGGGAATTGTGGAGTCGCAATACGGCCTGTGTA
FD936653       <-- AACTTCCACAACTCAACTGGGAATTGTGGAGTCGCAATACGGCCTGTGTA
EW719114       <-- AACTTCCACAACTCAACTGGGAATTGTGGAGTCGCAATACGGCCTGTGTA
FD979378       --> ..................................................
FD979539       --> ..................................................
EW714913       --> ..................................................
EX906304       --> ..................................................
EY947837       --> ..................................................
FD940874       --> ..................................................
EV568526       --> ..................................................
EV538980       --> ..................................................

               1101   -   1151
UN20227        --> CCCACTCAAGTCCAACTCAGCATTTGGTTTGTTGTCTCTAAGTGTATGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- CCCACTCAAGTCCAACTCAGCATTTGGTTTGTTGTCTCTAAGTGTATGTA
EV542874       <-- CCCACTCAAGTCCAACTCAGCATTTGGTTTGTTGTCTCTAAGTGTATGTA
EX909866       <-- CCCACTCAAGTCCAACTCAGCATTTGGTTTGTTGTCTCTAAGTGTATGTA
EX777158       <-- CCCACTCAAGTCCAACTCAGCATTTGGTTTGGTGTCTCTAAGTGTATGTA
EY943664       <-- CCCACTCAAGTCCAACTCAGCATTTGGTTTGTTGTCTCTAAGTGTATGTA
FD936653       <-- CCCACTCAAGTCCAACTCAGCATTTGGTTTGTTGTCTCTAAGTGTATGTA
EW719114       <-- CCCACTCAAGTCCAACTCAGCATTTGGTTTGTTGTCTCTAAGTGTATGTA
FD979378       --> ..................................................
FD979539       --> ..................................................
EW714913       --> ..................................................
EX906304       --> ..................................................
EY947837       --> ..................................................
FD940874       --> ..................................................
EV568526       --> ..................................................
EV538980       --> ..................................................

               1151   -   1201
UN20227        --> AATTGGGGGTTTTATTTGTTTTAATTGGTTGGGTTTTGTTGTGAGATAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- AATTGGGGGTTTTATTTGTTTTAATTGGTTGGGTTTTGTTGTGAGATAGA
EV542874       <-- AATTGGGGGTTTTATTTGTTTTAATTGGTTGGGTTTTGTTGTGAGATAGA
EX909866       <-- AATTGGGGGTTTTATTTGTTTTAATTGGTTGGGTTTTGTTGTGAGATAGA
EX777158       <-- AATTGGGGGTTTTATTTGTTTTAATTGGTTGGGTTTTGTTGTGAGATAGA
EY943664       <-- AATTGGGGGTTTTATTTGTTTTAATTGGTTGGGTTTTGTTGTGAGATAGA
FD936653       <-- AATTGGGGGTTTTATTTGTTTTAATTGGTTGGGTTTTGTTGTGAGATAGA
EW719114       <-- AATTGGGGGTTTTATTTGTTTTAATTGGTTGGGTTTTGTTGTGAGATAGA
FD979378       --> ..................................................
FD979539       --> ..................................................
EW714913       --> ..................................................
EX906304       --> ..................................................
EY947837       --> ..................................................
FD940874       --> ..................................................
EV568526       --> ..................................................
EV538980       --> ..................................................

               1201   -   1251
UN20227        --> CGTTGCCAAGCTCTATCCGAAAGCCGGATGTCTTGTGTTGTTTGTTATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- CGTTGCCAAGCTCTATCCGAAAGCCGGATGTCTTGTGTTGTTTGTTATCT
EV542874       <-- CGTTGCCAAGCTCTATCCGAAAGCCGGATGTCTTGTGTTGTTTGTTATCT
EX909866       <-- CGTTGCCAAGCTCTATCCGAAAGCCGGATGTCTTGTGTTGTTTGTTATCT
EX777158       <-- CGTTGCCAAGCTCTATCCGAAAGCCGGATGTCTTGTGTTGTTTGTTATCT
EY943664       <-- CGTTGCCAAGCTCTATCCGAAAGCCGGATGTCTTGTGTTGTTTGTTATCT
FD936653       <-- CGTTGCCAAGCTCTATCCGAAAGCCGGATGTCTTGTGTTGTTTGTTATCT
EW719114       <-- CGTTGCCAAGCTCTATCCGAAAGCCGGATGTCTTGTGTTGTTTGTTATCT
FD979378       --> ..................................................
FD979539       --> ..................................................
EW714913       --> ..................................................
EX906304       --> ..................................................
EY947837       --> ..................................................
FD940874       --> ..................................................
EV568526       --> ..................................................
EV538980       --> ..................................................

               1251   -   1301
UN20227        --> TTAATTTAGTTCAATTCTCTCATCGAGGGTTTTTGAGAATTATTTAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- TTAATTTAGTTCAATTCTCTCATCGAGGGTTTTTGAG.............
EV542874       <-- TTAATTTAGTTCAATTCTCTCGTCGAGGGTTTTTGAGAATAATTTAAGAC
EX909866       <-- TTAATTTAGTTCAATTCTCTCATCGAGGGTTTTTGgg.............
EX777158       <-- TTAATTTAGTTCAATTCTCTCATCGAGGGTTTTTGAGAATAATTTAAGAC
EY943664       <-- TTAATTTAGTTCAATTCTCTCATCGAGGGTTTTTGAGAATTATTTAAGAC
FD936653       <-- TTAATTTAGTTCAATTCTCTC.............................
EW719114       <-- TTAATTTAGTTCAATTCTCTCATCGAGGGTTTTTGAGAATTATTT.....
FD979378       --> ..................................................
FD979539       --> ..................................................
EW714913       --> ..................................................
EX906304       --> ..................................................
EY947837       --> ..................................................
FD940874       --> ..................................................
EV568526       --> ..................................................
EV538980       --> ..................................................

               1301   -   1351
UN20227        --> TTTCATGTTCTTCCAGAATTGATTAAAAATAAGAGACTTTCTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769471       <-- .............................................
EV542874       <-- TTTCATGTTCTTCCAGAATTGATTAAAAttt..............
EX909866       <-- .............................................
EX777158       <-- TTTCATG......................................
EY943664       <-- TTTCATGTTCTTCCAGAATTGATTAAAAATAAGAGACTTTCTCCC
FD936653       <-- .............................................
EW719114       <-- .............................................
FD979378       --> .............................................
FD979539       --> .............................................
EW714913       --> .............................................
EX906304       --> .............................................
EY947837       --> .............................................
FD940874       --> .............................................
EV568526       --> .............................................
EV538980       --> .............................................