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Alignment for radish unigene UN20228

               1      -     51
UN20228        --> GGTCCAGAAAAGATTCTTGTCGTTTTTACATTATAATAATATAAAGATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- ..................................................
EV528655       <-- ..................................................
EX887933       <-- ..................................................
EV566178       <-- ..................................................
FD550256       <-- ..................................................
FD546224       --> GGTCCAGAAAAGATTCTTGTCGTTTTTACATTATAATAATATAAAGATTT
FD976661       --> GGTCCAGAAAAGATTCTTGTCGTTTTTACATTATAATAATATAAAGATTT
EV571370       --> .GTCCAGAAAAGATTCTTGTCGTTTTTACATTATAATAATATAAAGATTT
EX767299       --> ......................TTTTTACATTATAATAATATAAAGATTT
EV532583       --> ...........................................AAGATTT
EY909907       --> ..................................................

               51     -    101
UN20228        --> TTTTTT-GGTTTCTTTGGGTTTAGAAGAAATGAACAGATGCACAAGCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ................GGGTTTAGAAGAAATGAACAGATGCACAAGCAAG
EX763177       <-- ..................................................
EV528655       <-- ..................................................
EX887933       <-- ..................................................
EV566178       <-- ..................................................
FD550256       <-- ..................................................
FD546224       --> TTTTTT-GGTTTCTTTGGGTTTAGAAGAAATGAACAGATGCACAAGCAAG
FD976661       --> TTTTTT-GGTTTCTTTGGGTTTAGAAGAAATGAACAGATGCACAAGCAAG
EV571370       --> TTTTTT-GGTTTCTTTGGGTTTAGAAGAAATGAACAGATGCACAAGCAAG
EX767299       --> TTTTTTTGGTTTCTTTGGGTTTAGAAGAAATGAACAGATGAACAAGCAAG
EV532583       --> TTTTT--GGTTTCTTTGGGTTTAGAAGAAATGAACAGATGCACAAGCAAG
EY909907       --> ................GGGTTTAGAAGAAATGAACAGATGCACAAGCAAG

               101    -    151
UN20228        --> CAAAGAAGAAACGATAGTAAACATTAGTTTCCCACATGTTTCACTCCGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- CAAAGAAGAAACGATAGTAAACATTAGTTTCCCACATGTTTCACTCCGTA
EX763177       <-- .............................................CCGTA
EV528655       <-- ..................................................
EX887933       <-- ..................................................
EV566178       <-- ..................................................
FD550256       <-- ..................................................
FD546224       --> CAAAGAAGAAACGATAGTAAACATTAGTTTCCCACATGTTTCACTCCGTA
FD976661       --> CAAAGAAGAAACGATAGTAAACATTAGTTTCCCACATGTTTCACTCCGTA
EV571370       --> CAAAGAAGAAACGATAGTAAACATTAGTTTCCCACATGTTTCACTCCGTA
EX767299       --> CAAAGAAGAAACGATAGTAAACATTAGTTTCCCACATGTTTCACTCCGTA
EV532583       --> CAAAGAAGAAACGATAGTAAACATTAGTTTCCCACATGTTTCACTCCGGA
EY909907       --> CAAAGAAGAAACGATAGTAAACATTAGTTTCCCACATGTTTCACTCCGTA

               151    -    201
UN20228        --> CCCATCAACTACTTGGTTTCTGTATGTACAGAGAGATACAATAACAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- CCCATCAACTACTTGGTTTCTGTATGTACAGAGAGATACAATAACAAACA
EX763177       <-- CCCATCAACTACTTGGTTTCTGTATGTACAGAGAGATACAATAACAAACA
EV528655       <-- ..................................................
EX887933       <-- ..................................................
EV566178       <-- ..................................................
FD550256       <-- ..................................................
FD546224       --> CCCATCAACTACTTGGTTTCTGTATGTACAGAGAGATACAATAACAAACA
FD976661       --> CCCATCAACTACTTGGTTTCTGTATGTACAGAGAGATACAATAACAAACA
EV571370       --> CCCATCAACTACTTGGTTTCTGTACGTACAGAGAGATACAATAACAAACA
EX767299       --> CCCATCAACTACTTGGTTTCTGTATGTACAGAGAGATACAATAACAAACA
EV532583       --> C--ATCAACTACTTGGTTTCTGTATGTACGGAGAGATACAATAACAAACA
EY909907       --> CCCATCAACTACTTGGTTTCTGTATGTACAGAGAGATACAATAACAAACA

               201    -    251
UN20228        --> CCTTCTCTTAATCATGGCTCAAGTTTCATCTGTAGTGTTGGCTCAGAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- CCTTCTCTTAATCATGGCTCAAGTTTCATCTGTAGTGTTGGCTCAGAACA
EX763177       <-- C-TTCTCTTAATCATG-CTCAAGTTTCATCTGTAGTGTTGGCTCAGAACA
EV528655       <-- ..................................................
EX887933       <-- ..................................................
EV566178       <-- ..................................................
FD550256       <-- ..................................................
FD546224       --> CCTTCTCTTAATCATGGCTCAAGTTTCATCTGTAGTGTTGGCTCAAAACA
FD976661       --> CCTTCTCTTAATCATGGCTCAAGTTTCATCTGTAGTGTTGGCTCAGAACA
EV571370       --> CCTTCTCTTAATCATGGCTCAAGTTTCATCTGTAGTGTTGGCTCAGAACA
EX767299       --> CCTTCTCTTAATCATGGCTCAAGTTTCATCTGTAGTGTTGGCTCAAAACA
EV532583       --> CCTTCTCTTAATCATGGCTCAAGTTTCATCTGTAGTGTTGGCTCAAAACA
EY909907       --> CCTTCTCTTAATCATGGCTCAAGTTTCATCTGTAGTGTTGGCTCAGAACA

               251    -    301
UN20228        --> ACTGTTGTTGTTATTGCTCTGTTGCTGGACATCTCCAAACCCCATCTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ACTGTTGTTGTTATTGCTCTGTTGCTGGAAATCTCCAAACCCCATCTGAA
EX763177       <-- ACTGTTGTTGTTATTGCTCTGTTGCTGGACATCTCCAAACCCCATCTGAA
EV528655       <-- ..................................................
EX887933       <-- ..................................................
EV566178       <-- ..................................................
FD550256       <-- ..................................................
FD546224       --> ACTGTTGTTGTTATTGCTCTGTTGCTGGACATCTCCAAACCCCATCTGAA
FD976661       --> ACTGTTGTTGTTATTGCTCTGTTGCTGGACATCTCCAAACCCCATCTGAA
EV571370       --> ACTGTTGTTGTTATTGCTCTGTTGCTGGACATCTCCAAACCCCATCTGAA
EX767299       --> ACTGTTGTTGTTATTGCTCTGTTGCTGGACATCTCCAAACCCCATCTGAA
EV532583       --> ACTGTTGTTGTTATTGCTCTGTTGCTGGACATCTCCAAACCCCATCTGAA
EY909907       --> ACTGTTGTTGTTATTGCTCTGTTGCTGGAAATCTCCAAACCCCATCTGAA

               301    -    351
UN20228        --> CAACGCTTTGCAGATCATTTTCCCAGAATCCTTGTGTCTCAGCTTGAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- CAACGCTTTGCAGATCATTTTCCCAGAATCCTTGTGTCTCAGCTTGAACA
EX763177       <-- CAACGCTTTGCAGATCATTTTCCCAGAATCTTTGTGTCTCAGCTTGAACA
EV528655       <-- ...........................gatcaTGTGTCTCAGCTTGAACA
EX887933       <-- ..................................................
EV566178       <-- ..................................................
FD550256       <-- ..................................................
FD546224       --> CAACGCTTTGCTGATAATTTTCCCAGAATCCTTGTGTCTCAGCTTGAACA
FD976661       --> CAACGCTTTGCAGATCATTTTCCCAGAATCCTTGTGTCTCAGCTTGAACA
EV571370       --> CAACGCTTTGCAGATAATTTTCCCAGAATCCTTGTGTCTCAGCTTGAACA
EX767299       --> CAACGCTTTGCAGATCATTTTCCCAGAATCCTTGTGTCTCAGCTTGAACA
EV532583       --> CAACGCTTTGCAGATCATTTTCCCAGAATCCTTGTGTCTCAGCTTGAACA
EY909907       --> CAACGCTTTGCAGATCATTTTCCCAGAATCCTTGTGTCTCAGCTTGAACA

               351    -    401
UN20228        --> AATCCATCGCTGGAAGGGAAATGTGTGTCTGAAAATCTAGGCATGTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- AATCCATCGCTGGAAGGGAAATGTGTGTCTGAGAATCTAGGCATGTTCTT
EX763177       <-- AATCCATCGCTGGAAGGGAAATGTGTGTCTGAGAATCTAGGCATGTTCTT
EV528655       <-- AATCCATCGCTGGAAGGGAAATGTGTGTCTGAGAATCTAGGCATGTTCTT
EX887933       <-- ..................................................
EV566178       <-- ..................................................
FD550256       <-- ..................................................
FD546224       --> AATCCATCGCTGGAAGGGAAATGTGTGTCTGAAAATCTAGGCATGTTCTT
FD976661       --> AATCCATCGCTGGAAGGGAAATGTGTGTCTGAAAATCTAGGCATGTTCTT
EV571370       --> AATCCATCGCTGGAAGGGAAATGTGTGTCTGAGAATATAGGCATGTTCTT
EX767299       --> AATCCATCGCTGGAAGGGAAATGTGTGTCTGAAAATCTAGGCATGTTCTT
EV532583       --> AATCCATCGCTGGAAGGGAAATGTGTGTCTGAAAATCTAGGCATGTTCTT
EY909907       --> AATCCATCGCTGGAAGGGAAATGTGTGTCTGAAAATCTAGGCATGTTCTT

               401    -    451
UN20228        --> GGCAAGAGAATAGTATCCAGATGGAATTCTTTGCTCTGAGCAAGCCATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- GGCAAGAGAATAGTATCCc...............................
EX763177       <-- GGCAAGAGAATAGTATCCAGATGGAATTCTTTGCTCTGAGCAAGCCATTG
EV528655       <-- GGCAAGAGAATAGTATCCAGATGGAATTCTTTGCTCTGAGCAAGCCATTG
EX887933       <-- ..................................................
EV566178       <-- ..................................................
FD550256       <-- ..................................................
FD546224       --> GGCAAGAGAATAGTATCCAGATGGAATTCTTTGCTCTGAGCAGGCCATTG
FD976661       --> GGCAAGAGAATAGTATCCAGATGGAATTCTTTGCTCTGAGCAAGCCATTG
EV571370       --> GGCAAGAGAATAGTATCCAGATGGAATTCTTTGCTCTGAGCAAGCCATTG
EX767299       --> GGCAAGAGAATAGTATCCAGATGGAATTCTTTGCTCTGAGCAAGCCATTG
EV532583       --> GGCAAGAGAATAGTATCCAGATGGAATTCTTTGCTCTGAGCAAGCCATTG
EY909907       --> GGCAAGAGAATAGTATCCc...............................

               451    -    501
UN20228        --> CGTAAAGAGACTGCGTTAATGACTCTCCCGGTTGAATCATCTCTGTGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- CGTAAAGAGACTGCGTTAATGACTCTCCCGGTTGAATCATCTCTGTGGAT
EV528655       <-- CGTAAAGAGACTGCGTTAATGACTCTCCCGGTTGAATCATCTCTGTGGAT
EX887933       <-- ..................................................
EV566178       <-- ..................................................
FD550256       <-- ..................................................
FD546224       --> CGTAAAGAGACTGCGTTAATGACTCTCCCGGTTGAATCATCTCTGTGGAT
FD976661       --> CGTAAAGAGACTGCGTTAATGACTCTCCCGGTTGAATCATCTCTGTGGAT
EV571370       --> CGTAAAGAGACTGCGTTAATGACTCTCCCGGTTGAATCATCTCTGTGGAT
EX767299       --> CGTAAAGAGACTGCGTTAATGACTCTCCCGGTTGAATCATCTCTGTGGAT
EV532583       --> CGTAAAGAGACTGCGTTAATGACTCTCCCGGTTGAATCATCTCTGTGGAT
EY909907       --> ..................................................

               501    -    551
UN20228        --> AAAGCAGCATTAGGGTTAAACTCCATCCTTGGATTTATAGTAGCCAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- AAAGCAGCATTAGGGTTAAACTCCATCCTTGGATTTATAGTAGCCAGCTT
EV528655       <-- AAAGCAGCATTAGGGTTAAACTCCATCCTTGGATTTATAGTAGCCAGCTT
EX887933       <-- ..................................................
EV566178       <-- ..................................................
FD550256       <-- ..................................................
FD546224       --> AAAGCAGCATTAGGGTTAAACTCCATCCTTGGATTTATAGTAGCCAGCTT
FD976661       --> AAAGCAGCATTAGGGTTAAACTCCATCCTTGGATTTATAGTAGCCAGCTT
EV571370       --> AAAGCAGCATTAGGGTTAAACTCCATCCTTGGATTTATAGTAGCCAGCTT
EX767299       --> AAAGCAGCATTAGGGTTAAACTCCATCCTTGGATTTATAGTAGCCAGCTT
EV532583       --> AAAGCAGCATTAGGGTTAAACTCCATCCTTGGATTTATAGTAGCCAGCTT
EY909907       --> ..................................................

               551    -    601
UN20228        --> CATTGACAAGAACTCGACTTGTCTCTGCAAGGACTGCACATAGTTGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- CATTGACAAGAACTCGACTTGTCTCTGCAAGGACTGCACATAGTTGATGA
EV528655       <-- CATTGACAAGAACTCGACTTGTCTCTGCAAGGACTGCACATAGTTGATGA
EX887933       <-- ..................................................
EV566178       <-- ..................................................
FD550256       <-- ..................................................
FD546224       --> CATTGACAAGAACTCGACTTGTCTCTGCAAGGACTGCACATAGTTGA...
FD976661       --> CATTGACAAGAACTCGACTTGTCTCTGCAAGGACTGCACATAGTTGATGA
EV571370       --> CATTGACAAGAACTCGACTTGTCTCTGCAAGGACTGCACATAGTTGATGA
EX767299       --> CATTGACAAGAACTCGACTTGTCTCTGCAAGGACTGCACATAGTTGATGA
EV532583       --> CATTGACAAGAACTCGACTTGTCTCTGCAAGGACTGCACATAGTTGATGA
EY909907       --> ..................................................

               601    -    651
UN20228        --> TTTCATCAAGCATAACTGCTTTCCCAGTTATCCGGTTGCAACCAGGAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX763177       <-- TTTCATCAAGCATAACTGCTTTCCCAGTTATCCGGTTGCAACCAGGAACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV528655       <-- TTTCATCAAGCATAACTGCTTTCCCAGTAATCCGGTTGCAGCCAGGAACC  Raphanus raphanistrum subsp. maritimus
EX887933       <-- ..................................................  Raphanus sativus var. oleiformis
EV566178       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD550256       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD546224       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976661       --> TTTCATCAAGCATAACTGCTTTCCCAGTTATCCGGTTGCAATCAGGAACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571370       --> TTTCATCAAGCATAACTGCTTTCCCAGTAATCCGGTTGCAACCAGGAACC  Raphanus raphanistrum subsp. landra
EX767299       --> TTTCATCAAGCATAACTGCTTTCCCAGTTATCCGGTTGCAACCAGGAACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532583       --> TTTCATCAAGCATAACTGCTTTCCCAGTAATCCGGTTGCAGCCAGGAACC  Raphanus raphanistrum subsp. maritimus
EY909907       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               651    -    701
UN20228        --> AGATCCTGAAGCAAAGTCATCCTCTCGCTGATCTTCTCTCTTCTTGCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- AGATCCTGAAGCAAAGTCATCCTCTCGCTAATCTTCTCTCTTCTTGCTCT
EV528655       <-- AGATCCTGAAGCAAAGTCATCCTCTCGCTGATCTTCTCTCTTCTTGCTCT
EX887933       <-- .........AGCAAAGTCATCCTCTCGCTGATCTTCTCTCTTCTTGCTCT
EV566178       <-- ...........................................TTGCTCT
FD550256       <-- ..................................................
FD546224       --> ..................................................
FD976661       --> AGATCCTGAAGCAAAGTCATCCTCTCGCTGATCTTCTCTCTTCTTGCTCT
EV571370       --> AGATCCTGAAGCAAAGTCATCCTCTCGCTGATCTTCTCTCTTCTTGCTCT
EX767299       --> AGATCCTGAAGCAAAGTCATCCTCTCGCTAATCTTCTCTCTTCTTGCTCT
EV532583       --> AGATCCTGAAGCAAAGTCATCCTCTCGCTGATCTTCTCTCTTCTTGCTCT
EY909907       --> ..................................................

               701    -    751
UN20228        --> TTCAGCGAGGCTGTGGCTATCAGTTGCCTGACCCCTTCTAGCCCTAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX763177       <-- TTCAGCGAGGCTGTGGCTATCTGTAGCCTGACCCCTTCTAGCCCTAACAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV528655       <-- TTCAGCGAGGCTGTGGCTATCAGTTGCCTGACCCCTTCTAGCCCTAACAT  Raphanus raphanistrum subsp. maritimus
EX887933       <-- TTCAGCGAGGCTGTGGCTATCAGTTGCCTGACCCCTTCTAGCCCTAACAT  Raphanus sativus var. oleiformis
EV566178       <-- T-CAGCGAGGCTGTGGCTATCAGTTGC-TGACCCTTTCTAGCCCTAACAT  Raphanus raphanistrum subsp. landra
FD550256       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD546224       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976661       --> TTCAGCGAGGCTGTGGCTATCTGTAGCCTGACCCCTTCTAGCCCTAACAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571370       --> TTCAGCGAGGCTGTGGCTATCAGTTGCCTGACCCCTTCTAGCCCTAACAT  Raphanus raphanistrum subsp. landra
EX767299       --> TTCAGCGAGGCTGTGGCTATCTGTAGCCTGACCCCTTCTAGCCCTAACAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532583       --> TTCAGCGAGGCTGTGGCTATCAGTTGCCTGACCCCTTCTAGCCCTAACAT  Raphanus raphanistrum subsp. maritimus
EY909907       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN20228        --> GAATGTAATCTTTGGGGGG-CTCAGGAGGCTTAGCATCATCCTTATTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- GAATGTAATCTTTGGGGGG-CTCAGGAGGCTTTGCATCATCCTTATTGTC
EV528655       <-- GAATGTAATCTTTGGGGGG-CTCAGGAGGCTTAGCATCATCCTTATTGTC
EX887933       <-- GAATGTAATCTTTGGGGGG-CTCAGGAGGCTTAGCATCATCCTTATTGTC
EV566178       <-- GAATGTAATCTTTGGGGGG-CTCAGGAGGCTTAGCATCATCTTTATTGTC
FD550256       <-- ..................................................
FD546224       --> ..................................................
FD976661       --> GAATGTAATCTTTGGGGGG-CTCAG-AGGCTTTGCATCATCCTTATTGTC
EV571370       --> GAATGTAATCTTTGGGGGG-CTCAGGAGGCTTAGCATCATCCTTATTGTC
EX767299       --> GAATGTAATCTT......................................
EV532583       --> GAATGTAATCTTTGGGGGGGCTCAGGAGGCTTAGCATCATCCTTATTGTC
EY909907       --> ..................................................

               801    -    851
UN20228        --> TATTACGTTCTTGCTGCTTCCAGCTTCGTCCTGCTTGCTTCTCTTGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- TATTACGTTCTTGCTGCTTCCAGCTTCGTCCTGCTTGCTTCTCTTGGATC
EV528655       <-- TATTACGTTCTTGCTGCTTCCAGCTTCGTCCTGCTTGCTTCTCTTGGATC
EX887933       <-- TATTACGTTCTTGCTGCTTCCAGCTTCGTCCTGCTTGCTTCTCTTGGATC
EV566178       <-- TATTACGTTCTTGCTGCTTCCAGCTTCGTCGTGCTTGCTTCTCTTGGATC
FD550256       <-- ..................................................
FD546224       --> ..................................................
FD976661       --> TATTACGTTCTTGCTGCT................................
EV571370       --> TATTACGTTCTTGCTGCTTCCAGCTTCGTCCTGCTTGCTTCTCTTGGATC
EX767299       --> ..................................................
EV532583       --> TATTACGTTCTTGCTGCTTCCAGCTTCGTCCTGCTTGCTTCTCTTGGATC
EY909907       --> ..................................................

               851    -    901
UN20228        --> CAACAATCTCTCCTGAAACCTTAGAATTGGAAGCTGTAAGAGAGGAGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- CAACAATCTCTCCTGAAACCTTAGAATTGGAAGCTGTAAGAGAGGAGGAA
EV528655       <-- CAACAATCTCTCCTGAAACCTTAGAATTGGAAGCTGTAAGAGAGGAGGAA
EX887933       <-- CAACAATCTCTCCTGAAACCTTAGAATTGGAAGCTGTAAGAGAGGAGGAA
EV566178       <-- CAACAATCTCTCCTGAAACCTTAGAATTGGAAGCTGTAAGAGAGGAGGAA
FD550256       <-- .....................gccctaacatgaaTGTAAGAGAGGAGGAA
FD546224       --> ..................................................
FD976661       --> ..................................................
EV571370       --> CAACAATCTCTCCTGAAACCTTAGAATTGGAAGCTGTAA...........
EX767299       --> ..................................................
EV532583       --> CAACAATCTCTCCTG...................................
EY909907       --> ..................................................

               901    -    951
UN20228        --> GCAGGAGAGTCCTTGCCATTACCTCCAGAAACAGAAACAGGGATCGACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- GCAGGAGAGTCCTTGCCATTACCTCCAGAAACAGAAACAGGGATC.....
EV528655       <-- GCAGGAGAGTCCTTGCCATTACCTCCAGAAACAGAAACAGGGATAGACTT
EX887933       <-- GCGGGAGAGTCCTTGCCATTACCTCCAGAAACAGAAACAGGGATCGACTT
EV566178       <-- GCAGGAGAGTCCTTGCCATTACCTCCAGAAACAGAAACAGGGATCGACTT
FD550256       <-- GCAGGAGAGTCCTTGCCATTACCTCCAGAAACAGAAACAGGGATAGACTT
FD546224       --> ..................................................
FD976661       --> ..................................................
EV571370       --> ..................................................
EX767299       --> ..................................................
EV532583       --> ..................................................
EY909907       --> ..................................................

               951    -   1001
UN20228        --> TCTCTTCCTGGAGTTTGGTTTCGGTGTCTGAACTCGATGATCCGAATGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- ..................................................
EV528655       <-- TCTCTTCCTGGAGTTTGGTTTCGCTGTCTGAACTCGATGATCCGAA--TC
EX887933       <-- TCTCTTCCTGGAGTTTGGTTTCGGTGTCTGAACTCGATGATCCGAATCTG
EV566178       <-- TCTCTTCCTGGAGTTTGGTTTCGGTGTCTGAACTCGATGATCCGAATCTG
FD550256       <-- TCTCTTCCTGGAGTTTGGTTTCGCTGTCTGAACTCGATGATCCGAA--TC
FD546224       --> ..................................................
FD976661       --> ..................................................
EV571370       --> ..................................................
EX767299       --> ..................................................
EV532583       --> ..................................................
EY909907       --> ..................................................

               1001   -   1051
UN20228        --> TTGGATCCAGCAAGGAGCTCTTGTTGCTGTCTTGTCCTGTTAGCTGATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- ..................................................
EV528655       <-- -TGGATCCAGCAAGGAGCTCTTGTTGCTGTCTTGTCCTGTTAGCTGATCG
EX887933       <-- CTGGATCCAGCAAGGAGCTCTTGTTGCTGTCTTGTCCTGTTAGCTGATCG
EV566178       <-- CTGGATCCAGCAAGGAGCTCTTGTTGCTGTCTTGTCCTGTTAGCTGATCG
FD550256       <-- -TGGATCCAGCAAGGAGCTCTTGTTGCTGTCTTGTCCTGTTAGCTGATCG
FD546224       --> ..................................................
FD976661       --> ..................................................
EV571370       --> ..................................................
EX767299       --> ..................................................
EV532583       --> ..................................................
EY909907       --> ..................................................

               1051   -   1101
UN20228        --> GATCCGAACTGACCCCCCGGATAAGGAGGGAAGCGGATCTCTTGAGGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- ..................................................
EV528655       <-- GATCCGAACTGACCCCCCGGATAAGGAGGGAAGCGGATCTCTTGAGGAGG
EX887933       <-- GATCCGAACTGAC---CCGGATAAGGAGGGAAGCGGATCTCTTGAGGAGG
EV566178       <-- GATCCGAACTGAC---CCGGATAAGGAGGGAAGCGGATCTCTTGAGGAGG
FD550256       <-- GATCCGAACTGACCCCCCGGATAAGGAGGGAAGCGGATCTCTTGAGGAGG
FD546224       --> ..................................................
FD976661       --> ..................................................
EV571370       --> ..................................................
EX767299       --> ..................................................
EV532583       --> ..................................................
EY909907       --> ..................................................

               1101   -   1151
UN20228        --> GTTGTTGCAGAATCTGCCGAGGAGATCGCCGATGGTTCCTTCGTTGCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- ..................................................
EV528655       <-- GTTGTTGCAGAATCTGCCGAGGAGATCGCCGATGGTTCCTTCGTTGCCAA
EX887933       <-- GTTGTTGCAGAATCTGCCGAGGAGATCGCCGATGGTTCCTTCGTCGCCAA
EV566178       <-- GTTGTTGCAGAATCTGCCGAGGAGATCGCCGATGGTTCCTTCATTGCCAA
FD550256       <-- GTTGTTGCAGAATCTGCCGAGGAGATCGCCGATGGTTCCTTCGTTGCCAA
FD546224       --> ..................................................
FD976661       --> ..................................................
EV571370       --> ..................................................
EX767299       --> ..................................................
EV532583       --> ..................................................
EY909907       --> ..................................................

               1151   -   1201
UN20228        --> AGGGATCGCTCTGACCCAAAGGTAAGTACTTTATTCTTTCATTCTCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- ..................................................
EV528655       <-- AGGGATCGCTCTGACCCAAAGGTAAGTACTcc..................
EX887933       <-- AGGGATC...........................................
EV566178       <-- AGGGATCGCTCTGACCCAAAGGTAAGTACTTTATTCTTTCATTCTCCATC
FD550256       <-- AGGGATCGCTCTGACCCAAAGGTAAGTACTTTATTCTTTCATTCTCCATC
FD546224       --> ..................................................
FD976661       --> ..................................................
EV571370       --> ..................................................
EX767299       --> ..................................................
EV532583       --> ..................................................
EY909907       --> ..................................................

               1201   -   1251
UN20228        --> TTCTTCTTCTTCTTAATAGTTCTATCTTGTAATGAGATTCTGAATCAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- ..................................................
EV528655       <-- ..................................................
EX887933       <-- ..................................................
EV566178       <-- TTCTTCTTCTTCTTAATAGTTCTATCTTGTAATGAGATTCTGAAACAGAG
FD550256       <-- TTCTTCTTCTTCTTAATAGTTCTATCTTGTAATGAGATTCTGAATCAGAG
FD546224       --> ..................................................
FD976661       --> ..................................................
EV571370       --> ..................................................
EX767299       --> ..................................................
EV532583       --> ..................................................
EY909907       --> ..................................................

               1251   -   1301
UN20228        --> AATAAGACAGGAAAGCTACTTCTACATGGGAAAGATATGAGATATTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- ..................................................
EV528655       <-- ..................................................
EX887933       <-- ..................................................
EV566178       <-- AATAAGACAGGAAAGCTACTTCTACATGGGAAAGATATGAGATATTTTTT
FD550256       <-- AATAAGACAGGAAAGCTACTTCTACATGGGAAAGATATGAGATATTTTTT
FD546224       --> ..................................................
FD976661       --> ..................................................
EV571370       --> ..................................................
EX767299       --> ..................................................
EV532583       --> ..................................................
EY909907       --> ..................................................

               1301   -   1351
UN20228        --> GAAACACAAGTAAGAAAGGGACCACACTTTTGTTTCTGTGTGACTCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- ..................................................
EV528655       <-- ..................................................
EX887933       <-- ..................................................
EV566178       <-- GAAACACAAGTAAGAAAGGGACCACACTTTTGTTTCTGTGTGACTCTTCT
FD550256       <-- GAAACACAAGTAAGAAAGGGACCACACTTTTGTTTCTGTGTGACTCTTCT
FD546224       --> ..................................................
FD976661       --> ..................................................
EV571370       --> ..................................................
EX767299       --> ..................................................
EV532583       --> ..................................................
EY909907       --> ..................................................

               1351   -   1401
UN20228        --> TCTTCTTCTTCAGACAAATTATCAACTTATACCTCCGAGTAAAGATACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- ..................................................
EV528655       <-- ..................................................
EX887933       <-- ..................................................
EV566178       <-- TCTTCTTCTTCAGACAAATTATCAACTTATACCTCCGAGTAAAGATACTG
FD550256       <-- TCTTCTTCTTCAGACAAATTATCAACTTATACCTCCGAGTAAAGATACTG
FD546224       --> ..................................................
FD976661       --> ..................................................
EV571370       --> ..................................................
EX767299       --> ..................................................
EV532583       --> ..................................................
EY909907       --> ..................................................

               1401   -   1451
UN20228        --> AATTTCCCTGGAAAAATGTAACCAATTTTGGGTTTTGTTTGCGTTAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- ..................................................
EV528655       <-- ..................................................
EX887933       <-- ..................................................
EV566178       <-- AATTTCCCAGGAAAAATGTAACCAATTTTGGGTTTTGTTTGCGTTAAAAA
FD550256       <-- AATTTCCCTGGAAAAATGTAACCAATTTTGGGTTTTGTTTGCGTTAAAAA
FD546224       --> ..................................................
FD976661       --> ..................................................
EV571370       --> ..................................................
EX767299       --> ..................................................
EV532583       --> ..................................................
EY909907       --> ..................................................

               1451   -   1501
UN20228        --> AACGGAAACGAGTCAAGAAAATTTGCAGAGGGTACAAGAAGGGAGGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY913719       <-- ..................................................
EX763177       <-- ..................................................
EV528655       <-- ..................................................
EX887933       <-- ..................................................
EV566178       <-- AACGGAAACGAGTCAAGAAAATTTGCAGAGGGTACAAGAAGGGAGGGAGC
FD550256       <-- AACGGAAACGAGTCAAGAAAATTTGCAGAGGGTACAAGAAGGGAGGGAGC
FD546224       --> ..................................................
FD976661       --> ..................................................
EV571370       --> ..................................................
EX767299       --> ..................................................
EV532583       --> ..................................................
EY909907       --> ..................................................

               1501   -   1551
UN20228        --> TAGCTATGGATGAATCC
                   ~~~~~~~~~~~~~~~~~
EY913719       <-- .................
EX763177       <-- .................
EV528655       <-- .................
EX887933       <-- .................
EV566178       <-- TAGCTATGGATGAATCC
FD550256       <-- Tc...............
FD546224       --> .................
FD976661       --> .................
EV571370       --> .................
EX767299       --> .................
EV532583       --> .................
EY909907       --> .................