1      -     51
UN20238        --> GGATCTATCAATCGAATCGAAGAAGAATCAGAGACACAATCGACGACGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531054       <-- GGATCTATCAATCGAATCGAAGAAGAATCAGCGACACAATCGACGACGAC  Raphanus raphanistrum subsp. maritimus
FD530434       <-- GGATCTATCAATCGAATCGAAGAAGAATCAGCGACACAATCGACGACGAC  Raphanus raphanistrum subsp. maritimus
FD544762       <-- ........................ggATCAGAGACACAATCGACGACGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907321       <-- ...........................ggAGAGACACAATCGACGACGAC  Raphanus sativus cv Rat-Tail Radish #3870
EW738808       <-- ............................ggGAGACACAATCGACGACGAC  Raphanus sativus cv Rat-Tail Radish #3870
FD538672       <-- ...........................ggatAGACACAACCGACGAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531541       <-- ...........................ggagcGACACAATTGACGACGAC  Raphanus raphanistrum subsp. maritimus
EV530227       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV525494       --> GGATCTATCAATCGAATCGAAGAAGAATCAGCGACACAATCGACGACGAC  Raphanus raphanistrum subsp. maritimus
EV526622       --> GGATCTATCAATCGAATCGAAGAAGAATCAGCGACACAATCGACGACGAC  Raphanus raphanistrum subsp. maritimus
FD534517       --> GGATCTATCAATCGAATCGAAGAAGAATCAGCGACACAATCGACGACGAC  Raphanus raphanistrum subsp. maritimus
FD548597       --> ........................ggATCAGAGACACAATCGACGACGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903206       --> ...........................ggAGAGACACAATCGACGACGAC  Raphanus sativus cv Rat-Tail Radish #3870
EW734473       --> ............................ggGAGACACAATCGACGACGAC  Raphanus sativus cv Rat-Tail Radish #3870
FD542664       --> ...........................ggatAGACACAACCGACGAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD535999       --> ...........................ggagcGACACAATCGACGACGAC  Raphanus raphanistrum subsp. maritimus
FD579736       --> ..............................ggGACACAATCGACGACGAC  Raphanus sativus cv Rat-Tail Radish #3870
EV528600       --> .................................ggACAATCGACGACGAC  Raphanus raphanistrum subsp. maritimus
EV539551       --> ...................................ggaacCGACGAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757575       --> ....................................ggacCGACGAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978208       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               51     -    101
UN20238        --> TAGCTGAGAAGA-AGAGAGAGAGAGAGA----TCAGATAGTGAGAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531054       <-- TAGCTGAGAAGA-AGAGAGAGAGAGAGA----TCAGATAGTGAGAAAAAA  Raphanus raphanistrum subsp. maritimus
FD530434       <-- TAGCTGAGAAGA-AGAGAGAGAGAGAGA----TCAGATAGTGAGAAAAAA  Raphanus raphanistrum subsp. maritimus
FD544762       <-- TAGCTGAGAAGA-AGAGAGTGAGAGAGA----TCAGATAGTGAGAAAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907321       <-- TAGCTGAGAAGA-AGAGAGAGAGAG--A----TCAGATAGTGAGAAAATA  Raphanus sativus cv Rat-Tail Radish #3870
EW738808       <-- TAGCTGAGAAGA-AGAGAGTGAGAGAGA----TCAGATAGTGAGAAAAAA  Raphanus sativus cv Rat-Tail Radish #3870
FD538672       <-- GAGCTCAGAAGA--GAGAGTGAGAGAGA----TCAGATAGTGAGAAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531541       <-- TAGCTGAGAAGA-AGAGAGAGAGAGAGA----TCAGATAGTGAGAAAAAA  Raphanus raphanistrum subsp. maritimus
EV530227       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV525494       --> TAGCTGAGAAGA-AGAGAGAGAGAGAGA----TCAGATAGTGAGAAAAAA  Raphanus raphanistrum subsp. maritimus
EV526622       --> TAGCTGAGAAGA-AGAGAGAGAGAGAGA----TCAGATAGTGAGAAAAAA  Raphanus raphanistrum subsp. maritimus
FD534517       --> TAGCTGAGAAGA-AGAGAGAGAGAGAGA----TCAGATAGTGAGAAAAAA  Raphanus raphanistrum subsp. maritimus
FD548597       --> TAGCTGAGAAGA-AGAGAGTGAGAGAGA----TCAGATAGTGAGAAAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903206       --> TAGCTGAGAAGA-AGAGAGAGAGAGA------TCAGATAGTGAGAAAATA  Raphanus sativus cv Rat-Tail Radish #3870
EW734473       --> TAGCTGAGAAGA-AGAGAGTGAGAGAGA----TCAGATAGTGAGAAAAAA  Raphanus sativus cv Rat-Tail Radish #3870
FD542664       --> GAGCTCAGAAGA--GAGAGTGAGAGAGA----TCAGATAGTGAGAAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD535999       --> TAGCTGAGAAGA-AGAGAGAGAGAGAGA----TCAGATAGTGAGAAAAAA  Raphanus raphanistrum subsp. maritimus
FD579736       --> TAGCTGAGAAGA-AGAGAGAGAGAGAGA----TCAGATAGTGAGAAAAAA  Raphanus sativus cv Rat-Tail Radish #3870
EV528600       --> TAGCTGAGAAGA-AGAGAGAGAGAGAGAGAGATCAGATAGTGAGAAAAAA  Raphanus raphanistrum subsp. maritimus
EV539551       --> GAGCTCAGAAGAGAGAGTGAGAGAGAGA----TCAGATAGTGAGAAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757575       --> GAGCTCAGAAGAGAGAGTGAGAGAGAGA----TCAGATAGTGAGAAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978208       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               101    -    151
UN20238        --> -TGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531054       <-- -TGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus raphanistrum subsp. maritimus
FD530434       <-- -TGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus raphanistrum subsp. maritimus
FD544762       <-- ATGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907321       <-- -TGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus sativus cv Rat-Tail Radish #3870
EW738808       <-- ATGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus sativus cv Rat-Tail Radish #3870
FD538672       <-- -TGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531541       <-- -TGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus raphanistrum subsp. maritimus
EV530227       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV525494       --> -TGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus raphanistrum subsp. maritimus
EV526622       --> -TGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus raphanistrum subsp. maritimus
FD534517       --> -TGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus raphanistrum subsp. maritimus
FD548597       --> ATGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903206       --> -TGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus sativus cv Rat-Tail Radish #3870
EW734473       --> ATGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus sativus cv Rat-Tail Radish #3870
FD542664       --> -TGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD535999       --> -TGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus raphanistrum subsp. maritimus
FD579736       --> -TGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus sativus cv Rat-Tail Radish #3870
EV528600       --> -TGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus raphanistrum subsp. maritimus
EV539551       --> -TGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757575       --> -TGCCGGTGATGGAGAAACTGAGGATGTTCGTGGCGCAGGAGCCTGTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978208       --> ..............................................TTGT  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN20238        --> CGCCGCCTCCTGTTTAATCGGCGGTGTTGGACTCTTTCTGCCTGCTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531054       <-- CGCCGCCTCCTGTTTAATCGGCGGCGTTGGACTCTTTCTGCCTGCTGTTG  Raphanus raphanistrum subsp. maritimus
FD530434       <-- CGCCGCCTCCTGTTTAATCGGCGGCGTTGGACTCTTTCTGCCTGCTGTTG  Raphanus raphanistrum subsp. maritimus
FD544762       <-- CGCCGCCTCCTGTTTAATCGGCGGTGTTGGACTCTTTTTGCCTGCTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907321       <-- CGCCGCCTCCTGTTTAATCGGCGGTGTTGGTCTCTTTCTGCCTGCTGTTG  Raphanus sativus cv Rat-Tail Radish #3870
EW738808       <-- CGCCGCCTCCTGTTTAATCGGCGGTGTTGGACTCTTTCTGCCTGCTGTTG  Raphanus sativus cv Rat-Tail Radish #3870
FD538672       <-- CGCCGCCTCCTGTTTAATCGGCGGTGTTGGACTCTTTCTGCCTGCTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531541       <-- CGCCGCCTCCTGTTTAATCGGGGGCGTTGGACTCTTTTTGCCTGCTGTTG  Raphanus raphanistrum subsp. maritimus
EV530227       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV525494       --> CGCCGCCTCCTGTTTAATCGGCGGCGTTGGACTCTTTCTGCCTGCTGTTG  Raphanus raphanistrum subsp. maritimus
EV526622       --> CGCCGCCTCCTGTTTAATCGGCGGCGTTGGACTCTTTCTGCCTGCTGTTG  Raphanus raphanistrum subsp. maritimus
FD534517       --> CGCCGCCTCCTGTTTAATCGGCGGCGTTGGACTCTTTCTGCCTGCTGTTG  Raphanus raphanistrum subsp. maritimus
FD548597       --> CGCCGCCTCCTGTTTAATCGGCGGTGTTGGACTCTTTCTGCCTGCTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903206       --> CGCCGCCTCCTGTTTAATCGGCGGTGTTGGTCTCTTTCTGCCTGCTGTTG  Raphanus sativus cv Rat-Tail Radish #3870
EW734473       --> CGCCGCCTCCTGTTTAATCGGCGGTGTTGGACTCTTTCTGCCTGCTGTTG  Raphanus sativus cv Rat-Tail Radish #3870
FD542664       --> CGCCGCCTCCTGTTTAATCGGCGGTGTTGGACTCTTTCTGCCTGCTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD535999       --> CGCCGCCTCCTGTTTAATCGGCGGCGTTGGACTCTTTCTGCCTGCTGTTG  Raphanus raphanistrum subsp. maritimus
FD579736       --> CGCCGCCTCCTGTTTAATCGGCGGTGTTGGTCTCTTTCTGCCTGCTGTTG  Raphanus sativus cv Rat-Tail Radish #3870
EV528600       --> CGCCGCCTCCTGTTTAATCGGCGGCGTTGGACTCTTTCTGCCTGCTGTTG  Raphanus raphanistrum subsp. maritimus
EV539551       --> CGCCGCCTCCTGTTTAATCGGCGGTGTTGGACTCTTTCTGCCTGCTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757575       --> CGCCGCCTCCTGTTTAATCGGCGGTGTTGGACTCTTTCTGCCTGCTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978208       --> CGCCGCCTCCTGTTTAATCGGCGGTGTTGGACTCTTTCTGCCTGCTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)

               201    -    251
UN20238        --> TGAGGCCTATTCTAGACTCACTCGAGGCTTCTAAGCAAGTTAAAGCGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531054       <-- TGAGGCCTATTCTAGACTCACTCGAGGCTTCTAAGCAAGTTAAAGCGCCT
FD530434       <-- TGAGGCCTATTCTAGACTCACTCGAGGCTTCTAAGCAAGTTAAAGCGCCT
FD544762       <-- TGAGGCCTATTCTAGACTCACTCGAGGCTTTTAAGCAAGTTAAAGCGCCT
EX907321       <-- TGAGGCCTATTCTTGACTCACTCGAGGCTTCTAAGCAAGTCAAAGCGCCT
EW738808       <-- TGAGGCCTATTCTAGACTCACTCGAGGCTTTTAAGCAAGTTAAAGCGCCT
FD538672       <-- TGAGGCCTATTCTAGACTCACTCGAGGCTTTTAAGCAAGTTAAAGCGCCT
FD531541       <-- TGAGGCCTATTCTAGACTCACTCGAGGCTTTTAAGCAAGTTAAAGCGCCT
EV530227       <-- ..................................................
EV525494       --> TGAGGCCTATTCTAGACTCACTCGAGGCTTCTAAGCAAGTTAGAGCGCCT
EV526622       --> TGAGGCCTATTCTAGACTCACTCGAGGCTTCTAAGCAAGTTAAAGCGCCT
FD534517       --> TGAGGCCTATTCTAGACTCACTCGAGGCTTCTAAGCAAGTTAAAGCGCCT
FD548597       --> TGAGGCCTATTCTAGACTCACTCGAGGCTTCTAAGCAAGTTAAAGCGCCT
EX903206       --> TGAGGCCTATTCTTGACTCACTCGAGGCTTCTAAGCAAGTCAAAGCGCCT
EW734473       --> TGAGGCCTATTCTAGACTCACTCGAGGCTTCTAAGCAAGTTAAAGCGCCT
FD542664       --> TGAGGCCTATTCTAGACTCACTCGAGGCTTCTAAGCAAGTTAAAGCGCCT
FD535999       --> TGAGGCCTATTCTAGACTCACTCGAGGCTTCTAAGCAAGTTAAAGCGCCT
FD579736       --> TGAGGCCTATTCTTGACTCACTCGAGGCTTCTAAGCAAGTCAAAGCGCCT
EV528600       --> TGAGGCCTATTCTAGACTCACTCGAGGCTTCTAAGCAAGTTAAAGCGCCT
EV539551       --> TGAGGCCTATTCTAGACTCACTCGAGGCTTCTAAGCAAGTTAAAGCGCCT
EX757575       --> TGAGGCCTATTCTAGACTCACTCGAGGCTTCTAAGCAAGTTAAAGCGCCT
FD978208       --> TGAGGCCTATTCTAGACTCACTCGAGGCTTCTAAGCAAGTTAAAGCGCCT

               251    -    301
UN20238        --> CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531054       <-- CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
FD530434       <-- CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
FD544762       <-- CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACGGACCTAATC
EX907321       <-- CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
EW738808       <-- CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
FD538672       <-- CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
FD531541       <-- CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
EV530227       <-- ........CGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
EV525494       --> CCCCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
EV526622       --> CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
FD534517       --> CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
FD548597       --> CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACGGACCTAATC
EX903206       --> CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
EW734473       --> CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
FD542664       --> CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
FD535999       --> CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
FD579736       --> CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
EV528600       --> CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
EV539551       --> CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
EX757575       --> CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC
FD978208       --> CCTCTTGCCGATGTTATTGCTGGTGTCACAGGGAAGAAACAGACCTAATC

               301    -    351
UN20238        --> CAAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTTTTCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531054       <-- CAAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTATTCCTT  Raphanus raphanistrum subsp. maritimus
FD530434       <-- CAAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTATTCCTT  Raphanus raphanistrum subsp. maritimus
FD544762       <-- CAAGCAATGATTTCCTCTGTTTTTTTACATTCAGATCATCATTTTTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907321       <-- CGAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTTTTCCTT  Raphanus sativus cv Rat-Tail Radish #3870
EW738808       <-- CAAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTTTTCCTT  Raphanus sativus cv Rat-Tail Radish #3870
FD538672       <-- CAAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTTTTCCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531541       <-- CAAGCAATGATTTCCTTTGTTTTTTTACATTCAGATCATCATTATTCCTT  Raphanus raphanistrum subsp. maritimus
EV530227       <-- CAAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTATTCCTT  Raphanus raphanistrum subsp. maritimus
EV525494       --> CAAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTATTCCTT  Raphanus raphanistrum subsp. maritimus
EV526622       --> CAAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTATTCCTT  Raphanus raphanistrum subsp. maritimus
FD534517       --> CAAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTATTCCTT  Raphanus raphanistrum subsp. maritimus
FD548597       --> CAAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTTTTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903206       --> CGAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTTTTCCTT  Raphanus sativus cv Rat-Tail Radish #3870
EW734473       --> CAAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTTTTCCTT  Raphanus sativus cv Rat-Tail Radish #3870
FD542664       --> CAAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTTTTCCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD535999       --> CAAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTATTCCTT  Raphanus raphanistrum subsp. maritimus
FD579736       --> CGAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTTTTCCTT  Raphanus sativus cv Rat-Tail Radish #3870
EV528600       --> CAAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTATTCCTT  Raphanus raphanistrum subsp. maritimus
EV539551       --> CAAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTTTTCCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757575       --> CAAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTTTTCCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978208       --> CAAGCAATGATTTCCTCTGTTTTCTTACATTCAGATCATCATTTTTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               351    -    401
UN20238        --> TTTGTCTTTT-AACTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531054       <-- TTTGTCTTTT-AACTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
FD530434       <-- TTTGTCTTTT-AACTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
FD544762       <-- TTTGTCTTTT-AACTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
EX907321       <-- TTTGTCTTTT-AACTCTTTCTATTTGCAGATGAAATAAGCCAAACTTCAT
EW738808       <-- TTTGTCTTTT-AACTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
FD538672       <-- TTTGTCTTTT-AACTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
FD531541       <-- TTTGTCTTTT-AATTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
EV530227       <-- TTTGTCTTTTTAACTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
EV525494       --> TTTGTCTTTT-AACTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
EV526622       --> TTTGTCTTTT-AACTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
FD534517       --> TTTGTCTTTT-AACTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
FD548597       --> TTTGTCTTTT-AACTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
EX903206       --> TTTGTCTTTT-AACTCTTTCTATTTGCAGATGAAATAAGCCAAACTTCAT
EW734473       --> TTTGTCTTTT-AACTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
FD542664       --> TTTGTCTTTT-AACTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
FD535999       --> TTTGTCTTTT-AATTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
FD579736       --> TTTGTCTTTT-AACTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
EV528600       --> TTTGTCTTTT-AACTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
EV539551       --> TTTGTCTTTT-AACTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
EX757575       --> TTTGTCTTTT-AACTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT
FD978208       --> TTTGTCTTTT-AACTCTTTCTATTTGCAAATGAAATAAGCCAAACTTCAT

               401    -    451
UN20238        --> TGTTTTTT-TTT--GTTTTGAAACTTATATAAAGGCATATGTGCTTGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531054       <-- TGTTTTTTCTTT--GTTTTGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus raphanistrum subsp. maritimus
FD530434       <-- TGTTTTTT-TTT-TGTTTTGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus raphanistrum subsp. maritimus
FD544762       <-- -GTTTTTT-TTT--GTTATGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907321       <-- TGTTTTTT-TTT-TGTTATGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus sativus cv Rat-Tail Radish #3870
EW738808       <-- T-TTTTTT-TTT--GTTATGAAACTTATATAAAGGCATATGTGCTTGTgc  Raphanus sativus cv Rat-Tail Radish #3870
FD538672       <-- TGTTTTTT-TTT--GTTTTGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531541       <-- TGTTTTTT-TTTTTGTTTTGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus raphanistrum subsp. maritimus
EV530227       <-- TGTTTTTT-TTT--GTTTTGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus raphanistrum subsp. maritimus
EV525494       --> TGTTTTTT-TTT--GTTTTGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus raphanistrum subsp. maritimus
EV526622       --> TGTTTTTTCTTT--GTTTTGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus raphanistrum subsp. maritimus
FD534517       --> TGTTTTTT-TTT-TGTTTTGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus raphanistrum subsp. maritimus
FD548597       --> -GTTTTTT-TTT--GTTATGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903206       --> TGTTTTTT-TTT-TGTTATGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus sativus cv Rat-Tail Radish #3870
EW734473       --> T-TTTTTT-TTT--GTTATGAAACTTATATAAAGGCATATGTGCTTGTgc  Raphanus sativus cv Rat-Tail Radish #3870
FD542664       --> TGTTTTTT-TTT--GTTTTGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD535999       --> TGTTTTTT-TTTTTGTTTTGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus raphanistrum subsp. maritimus
FD579736       --> TGTTTTTT-TTT-TGTTATGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus sativus cv Rat-Tail Radish #3870
EV528600       --> TGTTTTTT-TTT--GTTTTGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus raphanistrum subsp. maritimus
EV539551       --> TGTTTTTT-TTT--GTTTTGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757575       --> TGTTTTTT-TTT--GTTTTGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978208       --> GTTTTTTT-TTT--GTTATGAAACTTATATAAAGGCATATGTGCTTGTAC  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN20238        --> ACACTCTCTTCGTCTTTTTATCACATGTATTCATTTCCTAATGACAAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531054       <-- ACACTCTCTTCGTCTTTTTATCACATGTATTCATTTCCTAATGACAAATC
FD530434       <-- ACACTCTCTTCGTCTTTTTATCACATGTATTCATTTCCT...........
FD544762       <-- ACACTCTTTTCGTCTTTTTATCACATGTATTCATTTCCTAATGACAAATC
EX907321       <-- ACACTCTCTTCGTCTTTTTATCACATGTATTCATTTCCTAATGAC.....
EW738808       <-- ..................................................
FD538672       <-- AC................................................
FD531541       <-- ACACTtttt.........................................
EV530227       <-- ACACTCTCTTCGTCTTTTTATCACATGTATTCATTTCCTAATGACAAATC
EV525494       --> ACACTCTCTTCGTCTTTTTATCACATGTATTCATTTCCTAATGACAAATC
EV526622       --> ACACTCTCTTCGTCTTTTTATCACATGTATTCATTTCCTAATGACAAATC
FD534517       --> ACACTCTCTTCGTCTTTTTATCACATGTATTCATTTCCT...........
FD548597       --> ACACTCTCTTCGTCTTTTTATCACATGTATTCATTTCCTAATGACAAATC
EX903206       --> ACACTCTCTTCGTCTTTTTA..............................
EW734473       --> ..................................................
FD542664       --> AC................................................
FD535999       --> ACACTCTCTTCGTCTTTTTATCACATGTATTCATTTCCTAATGACAAATC
FD579736       --> ACACTCTCTTCGTCTTTTTATCACATGTATTCATTTCCTAATGACAAATC
EV528600       --> ACACTCTCTTCGTCTTTTTATCACATGTATTCATTTCCT...........
EV539551       --> ACACTCTCTTCGTCTTTTTATCACATGTATTCATTTCCTAATGAC.....
EX757575       --> ACACTCTCTTCGTCTTTTTATCACATGTATTCATTTCCTAATGACAAATC
FD978208       --> ACACTCTCTTCGTCTTTTTATCACATGTATTCATTTCCTAACGACAAATC

               501    -    551
UN20238        --> GAAAAGCTTGAAACTTTTTGTTTGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531054       <-- GAAAAGCTTGAAACc...........
FD530434       <-- ..........................
FD544762       <-- GAAAAGCTTGAAACTTTTTGTTTGCC
EX907321       <-- ..........................
EW738808       <-- ..........................
FD538672       <-- ..........................
FD531541       <-- ..........................
EV530227       <-- GAAAAGCTTG................
EV525494       --> GAAAAGCTTG................
EV526622       --> GAAAAGCTTGAAACc...........
FD534517       --> ..........................
FD548597       --> GAAAAGCTTGAAACTTTTTGTTTGCC
EX903206       --> ..........................
EW734473       --> ..........................
FD542664       --> ..........................
FD535999       --> GAAAAGCTTGAAACTT..........
FD579736       --> GAAAAGCTTGAAACTTT.........
EV528600       --> ..........................
EV539551       --> ..........................
EX757575       --> GAAAAGCTTGCAACTTTTTGTTTGCC
FD978208       --> GAAAAGCTTGAAACTTTTTGTTTGCC